Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSCAN4_chr19_57663935_57684152	0/0	t0003	948	89	12	8	56	7	6	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0004	948	24	13	2	7	0	2	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0005	946	22	1	10	8	1	2	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0006	951	14	13	1	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0007	947	11	7	2	1	0	1	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0008	949	9	0	4	5	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0009	947	8	7	1	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0010	950	7	7	0	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0011	949	3	0	1	2	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0012	949	3	2	1	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0013	946	2	2	0	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0014	947	2	0	1	1	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0015	948	2	2	0	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0016	858	2	0	2	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0017	946	1	1	0	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0018	947	1	1	0	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0019	947	1	0	0	1	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0020	948	1	0	1	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0021	948	1	1	0	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0022	945	1	1	0	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0023	945	1	0	1	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	t0024	945	1	0	0	1	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN5A_chr19_56216303_56319839	1/0	t0001	661	329	84	72	123	11	38	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/1	t0002	661	24	7	5	6	1	4	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	t0003	661	2	2	0	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	t0004	661	1	0	0	1	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	t0005	661	1	0	0	1	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	t0006	661	1	0	1	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	t0007	661	1	0	0	1	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	t0008	661	1	0	0	1	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	t0009	661	1	1	0	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	t0010	661	1	0	0	1	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5B_chr19_56184686_56202783	1/0	t0001	319	315	76	45	161	13	19	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/1	t0002	319	142	16	39	56	3	27	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	t0003	319	9	0	0	9	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	t0004	319	2	0	0	2	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	t0005	319	1	0	0	0	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	t0006	319	1	0	0	0	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5C_chr19_56197273_56214461	0/0	t0000	0	4	4	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	1/1	t0001	439	319	78	66	121	16	36	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	t0002	439	70	3	7	48	2	10	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	t0003	439	38	1	6	31	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	t0004	439	16	3	5	8	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	t0005	439	12	0	0	12	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	t0006	439	5	5	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	t0007	439	5	0	0	5	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	t0008	439	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	t0009	439	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	t0010	439	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN9_chr6_28220275_28238487	0/1	t0001	475	191	65	27	79	4	15	copy fasta	ZSCAN9	chr6	28220275	28238487