Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZXDB_chrX_57587011_57602477	0/1	t0001	3056	151	61	30	46	2	11	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	1/0	t0002	3056	129	0	26	81	7	14	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0003	3056	3	3	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0004	3056	2	1	1	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0005	3056	2	2	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0006	3052	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0007	3056	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0008	3057	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0009	3056	1	1	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0010	3056	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0011	3056	1	1	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0012	3056	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0013	3056	1	0	0	0	0	1	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0014	3056	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	t0015	3057	1	1	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDC_chr3_126432601_126480891	1/1	t0001	801	209	55	48	71	7	26	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0002	801	101	19	14	60	3	5	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0003	799	24	1	0	15	0	8	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0004	801	20	2	1	14	0	3	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0005	801	9	8	1	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0006	801	8	0	0	8	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0007	800	6	3	3	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0008	801	6	1	2	0	2	1	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0009	799	2	0	0	2	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0010	801	1	0	0	1	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0011	801	1	0	0	0	0	1	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0012	801	1	0	1	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0013	801	1	1	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	t0014	801	1	0	0	1	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZYG11A_chr1_52837760_52899998	1/1	t0001	2166	144	26	39	50	6	21	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0002	2167	43	17	7	14	0	5	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0003	2167	34	0	0	33	0	1	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0004	2165	20	20	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0005	2166	8	8	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0006	2166	6	3	2	0	1	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0007	2167	6	3	2	1	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0008	2165	4	3	1	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0009	2168	4	1	1	1	0	1	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0010	2165	3	3	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0011	2167	2	1	1	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0012	2166	2	2	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0013	2167	2	0	0	2	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0014	2168	2	0	0	2	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0015	2166	2	0	0	2	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0016	2166	1	0	1	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0017	2168	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0018	2166	1	0	0	0	1	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0019	2167	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0020	2166	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0021	2165	1	0	0	1	0	0	copy fasta	ZYG11A	chr1	52837760	52899998