Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZYG11A_chr1_52837760_52899998	0/0	t0022	2166	1	0	0	1	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	t0023	2168	1	0	0	1	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11B_chr1_52721453_52832336	0/0	t0001	5908	59	2	6	37	3	11	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0002	5909	50	6	8	36	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0003	5907	28	4	9	1	1	13	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0004	5908	28	0	0	27	0	1	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0005	5909	17	14	1	0	0	2	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0006	5907	15	9	2	4	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0007	5908	10	0	6	4	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0008	5908	9	1	3	3	0	2	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0009	5908	7	0	0	7	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0010	5915	7	7	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0011	5907	6	0	3	2	1	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0012	5907	6	6	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0013	5908	5	0	0	5	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0014	5908	4	4	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0015	5909	4	4	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0016	5914	4	2	1	0	1	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0017	5908	3	0	0	3	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0018	5909	3	0	0	3	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0019	5907	3	0	1	2	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0020	5907	3	3	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0021	5908	2	0	0	2	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0022	5914	2	0	0	2	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	1/0	t0023	5909	2	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0024	5909	2	2	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0025	5909	2	2	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0026	5909	2	0	0	2	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0027	5908	2	0	0	0	2	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0028	5907	2	0	2	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0029	5908	2	2	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0030	5909	2	0	0	1	0	1	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0031	5907	2	0	2	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0032	5908	2	0	1	0	0	1	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0033	5908	2	0	0	2	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0034	5908	2	2	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0035	5907	2	1	1	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0036	5909	2	0	0	2	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0037	5908	2	0	0	0	0	2	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0038	5908	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0039	5921	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0040	5914	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/1	t0041	5913	1	0	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0042	5908	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0043	5909	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0044	5908	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0045	5908	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0046	5910	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0047	5909	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0048	5908	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336