Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZYG11B_chr1_52721453_52832336	0/0	t0049	5909	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0050	5909	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0051	5910	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0052	5909	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0053	5907	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0054	5909	1	0	0	0	0	1	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0055	5909	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0056	5908	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0057	5909	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0058	5908	1	0	1	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0059	5907	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0060	5907	1	0	1	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0061	5907	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0062	5882	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0063	5907	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0064	5907	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0065	5908	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0066	5909	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0067	5908	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0068	5909	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0069	5908	1	0	1	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0070	5907	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0071	5909	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0072	5908	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0073	5909	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0074	5907	1	0	1	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0075	5908	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0076	5908	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0077	5914	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0078	5913	1	0	1	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0079	5913	1	0	1	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0080	5913	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0081	5909	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0082	5907	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0083	5908	1	1	0	0	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	t0084	5908	1	0	0	1	0	0	copy fasta	ZYG11B	chr1	52721453	52832336
ZYX_chr7_143376345_143396111	1/1	t0001	510	293	75	60	108	11	37	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	t0002	510	86	0	6	75	0	5	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	t0003	510	58	10	11	27	7	3	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	t0004	510	7	7	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	t0005	510	2	2	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	t0006	510	2	0	1	0	0	1	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	t0007	510	2	0	0	0	0	2	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	t0008	510	1	0	0	0	0	1	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	t0009	510	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	t0010	510	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	t0011	510	1	0	0	0	0	1	copy fasta	ZYX	chr7	143376345	143396111
ZZEF1_chr17_3999445_4148030	0/0	t0001	2581	102	18	26	44	3	11	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/1	t0002	2581	46	2	5	35	1	2	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0003	2581	46	22	7	15	0	2	copy fasta	ZZEF1	chr17	3999445	4148030