JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C5AR2_chr19_47327175_47352329	0/0	t0064	5711	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0065	5711	1	0	0	0	1	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0066	5712	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0067	5713	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0068	5676	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0069	5704	1	0	0	0	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0070	5705	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0071	5707	1	0	0	0	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0072	5716	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0073	5711	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0074	5715	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0075	5711	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0076	5712	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0077	5712	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0078	5712	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0079	5707	1	0	0	0	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0080	5710	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0081	5711	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0082	5711	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0083	5707	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0084	5711	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0085	5711	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0086	5711	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0087	5712	1	0	0	1	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0088	5724	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0089	5710	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0090	5711	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0091	5707	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0092	5712	1	0	0	0	1	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0093	5713	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0094	5704	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0095	5711	1	0	0	0	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	t0096	5704	1	0	0	0	1	0	copy fasta	C5AR2	chr19	47327175	47352329
C5_chr9_120947335_121055275	1/1	t0001	434	270	81	47	114	10	16	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	t0002	434	4	4	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	t0003	434	1	1	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	t0004	434	1	0	1	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5orf15_chr5_133950510_133973625	1/1	t0001	1391	383	75	72	181	15	38	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	t0002	1391	28	2	3	19	1	3	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	t0003	1391	17	16	1	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	t0004	1391	3	0	3	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	t0005	1391	2	2	0	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	t0006	1391	1	0	0	1	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	t0007	1391	1	0	0	1	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	t0008	1391	1	0	1	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	t0009	1391	1	0	0	0	0	1	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	t0010	1391	1	1	0	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf22_chr5_31527301_31560053	0/0	t0001	2244	104	13	13	60	5	13	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/1	t0002	2244	55	19	14	14	4	3	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0003	2244	53	4	13	24	2	10	copy fasta	C5orf22	chr5	31527301	31560053