Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZZEF1_chr17_3999445_4148030	0/0	t0004	2581	21	2	5	9	1	4	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0005	2581	18	10	3	0	1	4	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0006	2581	8	8	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0007	2581	6	4	2	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0008	2581	6	0	5	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0009	2582	6	6	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0010	2581	5	0	1	3	0	1	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0011	2581	4	4	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0012	2581	3	0	0	0	0	3	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0013	2581	3	0	2	0	0	1	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0014	2581	2	2	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	1/0	t0015	2581	2	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0016	2581	2	2	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0017	2581	2	2	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0018	2581	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0019	2581	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0020	2581	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0021	2581	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0022	2581	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0023	2581	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0024	2566	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0025	2581	1	0	1	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0026	2581	1	0	1	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0027	2581	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0028	2581	1	0	0	0	0	1	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0029	2602	1	0	0	0	0	1	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0030	2581	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	t0031	2581	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZZ3_chr1_77557416_77687658	0/1	t0001	3701	206	31	47	100	6	21	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	1/0	t0002	3701	104	24	11	50	1	17	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0003	3701	12	12	0	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0004	3701	5	5	0	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0005	3696	5	3	2	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0006	3700	3	3	0	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0007	3696	1	1	0	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0008	3701	1	0	0	1	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0009	3701	1	0	1	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0010	3701	1	1	0	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0011	3701	1	0	0	0	1	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0012	3701	1	0	0	1	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0013	3701	1	1	0	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0014	3701	1	1	0	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0015	3701	1	1	0	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0016	3701	1	0	0	1	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0017	3701	1	0	0	1	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0018	3701	1	1	0	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	t0019	3701	1	0	1	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658