JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C5orf22_chr5_31527301_31560053	0/0	t0004	2244	50	10	2	37	0	1	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0005	2244	46	19	12	6	2	7	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0006	2244	33	0	3	30	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	1/0	t0007	2244	8	0	0	6	1	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0008	2244	6	6	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0009	2244	6	0	2	4	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0010	2244	5	5	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0011	2244	4	3	1	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0012	2238	3	3	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0013	2238	3	0	1	0	0	2	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0014	2244	3	2	0	1	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0015	2243	2	0	0	1	0	1	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0016	2243	2	0	0	2	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0017	2243	2	2	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0018	2244	2	0	0	2	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0019	2244	1	0	0	1	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0020	2244	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0021	2244	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0022	2244	1	0	1	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0023	2243	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0024	2244	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0025	2244	1	0	1	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0026	2243	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0027	2243	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0028	2244	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0029	2244	1	0	0	1	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0030	2244	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0031	2244	1	0	0	1	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0032	2244	1	0	0	0	0	1	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0033	2244	1	0	0	0	0	1	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0034	2244	1	0	0	0	0	1	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	t0035	2244	1	0	1	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf24_chr5_134840968_134864735	1/1	t0001	4517	191	36	43	79	6	25	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0002	4513	97	9	10	67	2	9	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0003	4521	32	15	0	6	4	7	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0004	4505	14	0	2	12	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0005	4505	7	7	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0006	4517	6	0	0	6	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0007	4525	5	3	0	2	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0008	4517	4	2	2	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0009	4517	4	4	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0010	4513	3	1	1	0	1	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0011	4517	3	0	0	3	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0012	4521	3	3	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0013	4517	3	0	0	0	0	3	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0014	4517	2	0	0	2	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0015	4505	2	1	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0016	4517	2	0	0	2	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0017	4517	2	0	1	0	1	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0018	4521	2	2	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735