JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C5orf24_chr5_134840968_134864735	0/0	t0019	4517	2	2	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0020	4513	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0021	4513	1	1	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0022	4513	1	1	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0023	4517	1	1	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0024	4517	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0025	4517	1	0	1	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0026	4517	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0027	4517	1	1	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0028	4517	1	0	0	0	0	1	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0029	4517	1	1	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0030	4517	1	0	1	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0031	4525	1	1	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0032	4505	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0033	4517	1	0	1	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0034	4531	1	0	0	0	0	1	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0035	4517	1	1	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0036	4513	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	t0037	4517	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf34_chr5_43481709_43520148	0/1	t0001	587	186	24	35	98	8	20	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0002	587	121	41	26	29	6	19	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	1/0	t0003	586	13	11	1	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0004	587	5	2	0	0	0	3	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0005	587	5	0	0	5	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0006	587	2	0	2	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0007	587	1	1	0	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0008	587	1	1	0	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0009	587	1	1	0	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0010	587	1	0	0	1	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0011	587	1	0	0	1	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0012	587	1	1	0	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0013	587	1	1	0	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	t0014	587	1	1	0	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf46_chr5_147887722_147911538	1/1	t0001	265	435	89	74	208	16	46	copy fasta	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	t0002	265	9	8	1	0	0	0	copy fasta	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	t0003	265	6	3	3	0	0	0	copy fasta	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	t0004	265	2	0	0	2	0	0	copy fasta	C5orf46	chr5	147887722	147911538
C5orf47_chr5_173984170_174011140	1/1	t0001	1981	253	50	37	134	9	21	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0002	1981	45	27	11	0	0	7	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0003	1981	28	4	5	14	4	1	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0004	1981	10	1	5	0	2	2	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0005	1981	7	0	5	0	0	2	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0006	1981	6	0	3	0	1	2	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0007	1981	4	0	2	0	0	2	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0008	1981	3	0	0	0	1	2	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0009	1981	2	0	0	2	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0010	1981	2	2	0	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0011	1981	2	2	0	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0012	1981	2	2	0	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0013	1981	1	0	0	1	0	0	copy fasta	C5orf47	chr5	173984170	174011140