JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C5orf47_chr5_173984170_174011140	0/0	t0014	1981	1	0	1	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0015	1981	1	1	0	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0016	1981	1	0	0	0	1	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0017	1981	1	0	0	0	0	1	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0018	1981	1	0	0	1	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0019	1981	1	0	1	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0020	1981	1	0	0	1	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0021	1981	1	1	0	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0022	1996	1	0	0	0	0	1	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0023	1981	1	0	0	1	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0024	1981	1	0	0	1	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0025	1981	1	1	0	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0026	1981	1	1	0	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0027	1981	1	1	0	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0028	1981	1	0	0	0	0	1	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0029	1981	1	1	0	0	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	t0030	1981	1	0	0	1	0	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf52_chr5_157666533_157685158	1/1	t0001	242	413	94	75	184	18	40	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	t0002	242	4	2	2	0	0	0	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	t0003	242	1	0	1	0	0	0	copy fasta	C5orf52	chr5	157666533	157685158
C5orf58_chr5_170227985_170251231	1/1	t0001	226	424	94	86	182	18	42	copy fasta	C5orf58	chr5	170227985	170251231
C5orf58_chr5_170227985_170251231	0/0	t0002	226	2	0	0	2	0	0	copy fasta	C5orf58	chr5	170227985	170251231
C5orf63_chr5_127046304_127078502	0/1	t0001	629	157	24	32	77	4	19	copy fasta	C5orf63	chr5	127046304	127078502
C5orf63_chr5_127046304_127078502	1/0	t0002	629	135	39	20	55	3	17	copy fasta	C5orf63	chr5	127046304	127078502
C5orf63_chr5_127046304_127078502	0/0	t0003	629	30	20	3	6	0	1	copy fasta	C5orf63	chr5	127046304	127078502
C5orf63_chr5_127046304_127078502	0/0	t0004	629	25	1	0	18	1	5	copy fasta	C5orf63	chr5	127046304	127078502
C5orf63_chr5_127046304_127078502	0/0	t0005	629	2	2	0	0	0	0	copy fasta	C5orf63	chr5	127046304	127078502
C5orf63_chr5_127046304_127078502	0/0	t0006	629	1	0	1	0	0	0	copy fasta	C5orf63	chr5	127046304	127078502
C6_chr5_41137116_41218532	0/1	t0001	887	224	52	35	107	7	22	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	1/0	t0002	887	101	10	18	51	6	15	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0003	887	44	10	7	23	2	2	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0004	887	11	9	2	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0005	887	7	1	1	5	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0006	887	4	4	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0007	887	3	2	1	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0008	887	3	0	2	0	0	1	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0009	887	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0010	887	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0011	887	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0012	887	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	t0013	887	1	0	0	0	1	0	copy fasta	C6	chr5	41137116	41218532
C6orf118_chr6_165274664_165314605	1/1	t0001	413	340	77	62	151	8	40	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	t0002	413	12	11	1	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	t0003	413	7	6	1	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	t0004	413	1	0	0	1	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf120_chr6_169697126_169711360	0/0	t0001	3661	108	2	18	84	0	4	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	1/0	t0002	3660	66	15	18	15	3	14	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	t0003	3660	55	37	10	3	2	3	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/1	t0004	3658	51	7	10	29	1	3	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	t0005	3658	47	13	5	26	1	2	copy fasta	C6orf120	chr6	169697126	169711360