JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C6orf132_chr6_42096119_42147620	0/0	t0021	2793	2	2	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0022	2819	2	0	0	0	0	2	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0023	2818	2	2	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0024	2819	2	0	1	0	1	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0025	2817	2	2	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0026	2819	2	0	0	2	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0027	2816	2	0	2	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0028	2816	2	0	0	2	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0029	2793	2	2	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0030	2820	2	0	0	1	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0031	2817	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0032	2818	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0033	2817	1	0	0	0	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0034	2818	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0035	2816	1	0	0	0	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0036	2819	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0037	2819	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0038	2816	1	0	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0039	2816	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0040	2816	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0041	2816	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0042	2816	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0043	2816	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0044	2821	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0045	2820	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0046	2819	1	0	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0047	2819	1	0	0	0	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0048	2818	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0049	2817	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0050	2817	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0051	2820	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0052	2819	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0053	2817	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0054	2817	1	0	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0055	2816	1	0	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0056	2817	1	0	0	0	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0057	2815	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0058	2817	1	0	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0059	2816	1	0	0	0	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0060	2816	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0061	2817	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	t0062	2816	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf136_chr6_30642133_30658207	0/1	t0001	392	403	91	70	183	16	42	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	t0002	392	2	2	0	0	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	t0003	392	1	0	1	0	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	t0004	392	1	0	0	1	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	t0005	392	1	0	1	0	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	t0006	392	1	1	0	0	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf141_chr6_49545668_49557095	1/1	t0001	694	377	63	61	191	16	44	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	t0002	694	27	21	3	0	2	1	copy fasta	C6orf141	chr6	49545668	49557095