JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C6orf141_chr6_49545668_49557095	0/0	t0003	695	3	3	0	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	t0004	694	2	1	1	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	t0005	694	1	1	0	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	t0006	694	1	0	0	0	0	1	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	t0007	694	1	0	0	1	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	t0008	694	1	0	1	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	t0009	694	1	1	0	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf15_chr6_31106223_31117575	0/1	t0001	179	348	55	48	194	13	37	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	t0002	179	89	37	26	10	5	11	copy fasta	C6orf15	chr6	31106223	31117575
C6orf163_chr6_87339813_87370463	1/0	t0001	355	379	76	65	180	15	42	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/1	t0002	355	49	7	8	28	1	4	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	t0003	355	8	7	1	0	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf226_chr6_42885265_42895821	1/1	t0001	252	396	94	80	160	18	42	copy fasta	C6orf226	chr6	42885265	42895821
C6orf47_chr6_31653298_31665778	0/1	t0001	1597	198	27	40	83	12	35	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0002	1598	96	27	23	40	4	2	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0003	1597	40	1	4	27	1	7	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0004	1598	29	13	4	10	1	1	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0005	1598	28	15	1	12	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0006	1599	18	4	1	13	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0007	1587	3	3	0	0	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0008	1595	3	0	0	3	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0009	1598	3	0	0	3	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0010	1597	3	0	0	1	0	2	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0011	1597	3	0	3	0	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0012	1598	1	0	0	1	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0013	1597	1	0	0	0	0	1	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0014	1597	1	1	0	0	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0015	1599	1	1	0	0	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	t0016	1597	1	0	0	1	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf52_chr6_10666422_10699616	1/1	t0001	169	232	54	56	87	6	27	copy fasta	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	t0002	169	28	19	1	5	0	3	copy fasta	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	t0003	169	19	16	3	0	0	0	copy fasta	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	t0004	169	5	5	0	0	0	0	copy fasta	C6orf52	chr6	10666422	10699616
C6orf58_chr6_127572174_127596820	1/1	t0001	211	452	89	80	215	18	48	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	t0002	211	1	1	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	t0003	211	1	0	0	1	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf62_chr6_24699861_24724154	0/1	t0001	1762	131	18	23	73	4	12	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	1/0	t0002	1763	83	16	10	36	5	15	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0003	1763	60	1	22	30	4	3	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0004	1764	51	12	10	14	4	11	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0005	1763	26	12	4	10	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0006	1758	20	4	1	15	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0007	1763	16	14	2	0	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0008	1757	6	5	1	0	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0009	1761	5	1	2	1	0	1	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0010	1757	4	4	0	0	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0011	1762	2	0	0	0	0	2	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0012	1764	2	1	0	1	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0013	1762	1	0	0	1	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0014	1758	1	0	1	0	0	0	copy fasta	C6orf62	chr6	24699861	24724154