JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C6orf62_chr6_24699861_24724154	0/0	t0015	1752	1	0	0	1	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0016	1763	1	1	0	0	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0017	1764	1	0	1	0	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0018	1763	1	0	1	0	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0019	1762	1	0	0	0	1	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	t0020	1757	1	1	0	0	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf89_chr6_36880952_36933964	0/1	t0001	5721	85	3	22	45	4	10	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0002	5721	78	6	17	45	2	8	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0003	5713	37	1	0	34	0	2	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0004	5721	35	21	6	4	1	3	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0005	5728	18	3	6	3	3	3	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0006	5713	17	4	4	2	2	5	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0007	5713	13	13	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0008	5721	12	7	1	0	0	4	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0009	5728	10	0	8	2	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0010	5713	10	0	0	10	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0011	5721	8	0	0	8	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0012	5722	7	0	1	6	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0013	5709	5	5	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0014	5713	5	0	0	5	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0015	5717	5	5	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0016	5713	4	4	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0017	5721	4	2	1	0	0	1	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0018	5713	3	0	0	3	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0019	5709	3	3	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0020	5713	2	2	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0021	5713	2	1	1	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0022	5713	2	0	2	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0023	5713	2	2	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0024	5721	2	0	0	2	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0025	5717	2	2	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0026	5721	2	2	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	1/0	t0027	5720	1	0	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0028	5713	1	1	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0029	5713	1	1	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0030	5713	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0031	5728	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0032	5709	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0033	5718	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0034	5713	1	1	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0035	5713	1	1	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0036	5713	1	1	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0037	5713	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0038	5719	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0039	5709	1	1	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0040	5721	1	0	0	0	0	1	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0041	5721	1	0	1	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0042	5721	1	0	1	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0043	5721	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0044	5721	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964