Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACVR1_chr2_157731446_157881330	0/0	t0012	1813	2	0	0	2	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0013	1809	2	0	1	0	0	1	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0014	1803	1	0	0	1	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0015	1803	1	1	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0016	1803	1	0	0	0	0	1	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0017	1803	1	0	0	1	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0018	1803	1	1	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0019	1803	1	1	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0020	1809	1	1	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR1_chr2_157731446_157881330	0/0	t0021	1809	1	1	0	0	0	0	copy fasta	ACVR1	chr2	157731446	157881330
ACVR2A_chr2_147840029_147935822	0/0	t0001	3674	112	12	28	53	6	13	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0002	3673	86	2	12	53	4	15	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/1	t0003	3672	36	3	5	22	0	5	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0004	3672	35	26	6	0	3	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	1/0	t0005	3673	19	13	4	0	1	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0006	3675	17	7	1	7	0	2	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0007	3673	6	0	3	0	0	3	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0008	3663	5	1	0	4	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0009	3672	2	0	2	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0010	3674	2	0	2	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0011	3674	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0012	3674	1	0	0	0	0	1	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0013	3675	1	0	0	0	0	1	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0014	3674	1	1	0	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0015	3646	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0016	3672	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0017	3673	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0018	3673	1	1	0	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0019	3673	1	1	0	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0020	3673	1	1	0	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0021	3673	1	1	0	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0022	3673	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0023	3674	1	1	0	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0024	3674	1	1	0	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0025	3674	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0026	3674	1	0	1	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0027	3674	1	0	0	1	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2A_chr2_147840029_147935822	0/0	t0028	3673	1	1	0	0	0	0	copy fasta	ACVR2A	chr2	147840029	147935822
ACVR2B_chr3_38448890_38498142	0/1	t0001	10204	39	1	10	13	2	12	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0002	10202	18	0	0	17	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0003	10206	12	0	0	10	1	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0004	10203	11	0	0	11	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0005	10216	8	0	4	2	0	2	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0006	10217	6	0	2	4	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	1/0	t0007	10244	5	0	0	3	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0008	10230	5	0	0	4	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0009	10217	5	2	3	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0010	10202	4	0	0	4	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0011	10214	4	0	2	2	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0012	10212	4	0	0	4	0	0	copy fasta	ACVR2B	chr3	38448890	38498142