JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C6orf89_chr6_36880952_36933964	0/0	t0045	5721	1	0	0	0	0	1	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0046	5721	1	0	1	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0047	5721	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0048	5721	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	t0049	5713	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C7_chr5_40904497_40989643	0/1	t0001	3185	69	4	11	40	2	11	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0002	3185	68	0	15	51	1	1	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0003	3182	59	2	7	44	3	3	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	1/0	t0004	3185	49	12	13	18	1	4	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0005	3185	41	18	8	14	0	1	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0006	3182	20	20	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0007	3185	12	1	5	0	3	3	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0008	3185	7	7	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0009	3185	7	0	0	7	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0010	3182	5	4	1	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0011	3185	4	4	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0012	3182	4	0	0	0	0	4	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0013	3185	4	0	0	4	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0014	3185	2	0	1	0	1	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0015	3185	2	0	0	2	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0016	3185	2	0	0	0	0	2	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0017	3185	2	0	2	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0018	3182	2	2	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0019	3185	2	2	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0020	3185	2	2	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0021	3185	1	0	1	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0022	3185	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0023	3185	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0024	3185	1	0	0	0	0	1	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0025	3204	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0026	3185	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0027	3373	1	0	0	0	1	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0028	3182	1	0	1	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0029	3182	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0030	3182	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0031	3182	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0032	3182	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0033	582	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0034	3185	1	0	1	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0035	3185	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0036	3185	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	t0037	3182	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7orf25_chr7_42904273_42917070	0/1	t0001	540	230	23	45	126	8	27	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	1/0	t0002	540	83	49	6	19	2	6	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	t0003	540	36	1	8	16	2	9	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	t0004	540	16	6	7	1	2	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	t0005	540	6	4	2	0	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	t0006	540	4	4	0	0	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	t0007	540	3	3	0	0	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	t0008	557	2	2	0	0	0	0	copy fasta	C7orf25	chr7	42904273	42917070