JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C7orf25_chr7_42904273_42917070	0/0	t0009	540	1	0	0	1	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	t0010	540	1	0	1	0	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	t0011	540	1	0	0	1	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	t0012	540	1	0	1	0	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf31_chr7_25129692_25185354	1/1	t0001	1998	263	32	56	126	11	36	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0002	1998	123	48	10	54	5	6	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0003	1997	6	6	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0004	1998	4	0	0	4	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0005	1995	4	4	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0006	1998	2	2	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0007	1998	2	0	0	0	0	2	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0008	1997	1	0	0	0	0	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0009	1998	1	0	1	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0010	1998	1	0	1	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0011	1998	1	0	1	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0012	1998	1	0	0	0	0	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0013	1998	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0014	1998	1	0	1	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0015	1998	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0016	1998	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0017	1998	1	1	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0018	1998	1	1	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	t0019	1998	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf33_chr7_148585766_148620860	0/1	t0001	620	212	31	33	109	11	27	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	1/0	t0002	620	170	37	39	70	7	16	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	t0003	620	26	0	5	18	0	3	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	t0004	620	19	16	3	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	t0005	620	11	11	0	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	t0006	620	2	2	0	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	t0007	620	2	0	0	2	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	t0008	620	1	0	0	1	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	t0009	620	1	1	0	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf50_chr7_992006_1143247	1/0	t0001	1553	85	7	11	45	6	15	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0002	1525	45	5	11	27	1	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/1	t0003	1525	36	25	6	1	2	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0004	1525	24	0	2	21	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0005	1525	20	18	2	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0006	1553	17	0	10	4	1	2	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0007	1544	17	11	4	0	1	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0008	1544	16	4	3	4	0	5	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0009	1544	11	1	5	4	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0010	1544	10	2	4	0	2	2	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0011	1525	9	2	2	0	1	4	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0012	1525	6	6	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0013	1553	4	0	3	1	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0014	1544	4	4	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0015	1525	3	2	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0016	1553	2	2	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0017	1553	2	0	2	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0018	1525	2	2	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247