JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C7orf50_chr7_992006_1143247	0/0	t0019	1525	2	2	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0020	1544	1	0	1	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0021	1553	1	0	0	1	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0022	1553	1	1	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0023	1553	1	1	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0024	1544	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0025	1544	1	1	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0026	1544	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0027	1525	1	0	0	1	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0028	1483	1	0	0	1	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0029	1525	1	0	1	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	t0030	1525	1	0	1	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf57_chr7_48030543_48066297	1/1	t0001	1215	280	70	42	134	5	27	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	t0002	1215	98	19	20	39	11	9	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	t0003	1215	12	1	0	11	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	t0004	1215	4	0	0	4	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	t0005	1215	3	0	2	0	0	1	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	t0006	1215	2	0	2	0	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	t0007	1215	1	0	1	0	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	t0008	1215	1	1	0	0	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	t0009	1215	1	0	0	0	0	1	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	t0010	1215	1	0	1	0	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	t0011	1215	1	1	0	0	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C8A_chr1_56849797_56923223	1/1	t0001	613	313	58	51	154	14	34	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	t0002	613	37	22	7	6	0	2	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	t0003	613	7	7	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	t0004	613	4	0	0	0	0	4	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	t0005	613	3	3	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	t0006	613	1	0	0	1	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	t0007	613	1	0	0	1	0	0	copy fasta	C8A	chr1	56849797	56923223
C8B_chr1_56924207_56971015	1/0	t0001	265	265	85	49	96	10	24	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/1	t0002	265	133	15	23	69	5	20	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	t0003	265	2	0	0	1	1	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	t0004	265	1	0	0	0	0	1	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	t0005	265	1	0	0	0	0	1	copy fasta	C8B	chr1	56924207	56971015
C8G_chr9_136940243_136951975	1/1	t0001	273	413	93	82	170	18	48	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	t0002	273	2	0	0	2	0	0	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	t0003	273	1	1	0	0	0	0	copy fasta	C8G	chr9	136940243	136951975
C8orf33_chr8_145047467_145061030	0/0	t0001	1899	202	44	27	97	9	25	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	1/1	t0002	1899	152	22	29	88	3	8	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0003	1899	11	11	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0004	1901	5	3	2	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0005	1901	5	5	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0006	1899	4	0	3	0	1	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0007	1899	4	0	2	0	1	1	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0008	1899	2	2	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0009	1901	2	0	0	2	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0010	1899	2	1	0	0	1	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0011	1899	1	1	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0012	1840	1	0	0	1	0	0	copy fasta	C8orf33	chr8	145047467	145061030