JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C8orf33_chr8_145047467_145061030	0/0	t0013	1899	1	0	0	1	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0014	1899	1	0	0	1	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0015	1899	1	0	0	1	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0016	1899	1	1	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0017	1899	1	1	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0018	1899	1	0	0	1	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0019	1899	1	1	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0020	1899	1	0	0	1	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0021	1899	1	0	0	0	0	1	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0022	1899	1	0	0	1	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0023	1899	1	0	0	0	0	1	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0024	1899	1	0	0	1	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0025	1899	1	0	0	1	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0026	1899	1	0	1	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	t0027	1899	1	0	0	0	1	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf34_chr8_68325955_68824023	1/1	t0001	836	82	40	22	8	1	9	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	t0002	836	23	4	5	10	1	3	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	t0003	836	11	11	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	t0004	836	5	5	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	t0005	836	3	2	1	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	t0006	836	2	2	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	t0007	836	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	t0008	836	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf48_chr8_13561869_13573288	0/0	t0001	461	377	61	67	204	10	35	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/1	t0002	461	40	7	6	12	4	10	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	t0003	461	8	6	1	0	0	1	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	t0004	461	7	5	0	0	0	2	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	1/0	t0005	461	7	6	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	t0006	461	5	0	0	5	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	t0007	461	3	3	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	t0008	461	2	2	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	t0009	461	1	1	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	t0010	461	1	0	0	1	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	t0011	461	1	1	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf58_chr8_22594599_22609142	1/0	t0001	959	214	59	49	77	9	19	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/1	t0002	959	95	19	14	31	7	23	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	t0003	959	15	6	0	9	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	t0004	959	4	4	0	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	t0005	959	2	0	0	2	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	t0006	959	1	0	1	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	t0007	959	1	0	0	1	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf74_chr8_10667628_10705590	1/1	t0001	158	293	28	69	139	16	39	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	t0002	158	134	71	4	52	0	7	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	t0003	158	1	0	1	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	t0004	158	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	t0005	158	1	0	0	1	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf76_chr8_123214967_123246377	1/1	t0001	168	226	88	46	52	10	28	copy fasta	C8orf76	chr8	123214967	123246377
C8orf76_chr8_123214967_123246377	0/0	t0002	168	4	2	2	0	0	0	copy fasta	C8orf76	chr8	123214967	123246377
C8orf82_chr8_144520733_144534111	1/0	t0001	1805	166	24	31	86	8	16	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/1	t0002	1805	158	9	42	76	8	22	copy fasta	C8orf82	chr8	144520733	144534111