JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C8orf82_chr8_144520733_144534111	0/0	t0003	1805	30	28	2	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0004	1805	11	10	0	0	0	1	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0005	1805	7	7	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0006	1805	3	0	0	3	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0007	1821	3	3	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0008	1805	3	3	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0009	1805	3	3	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0010	1821	2	2	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0011	1805	1	0	0	1	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0012	1805	1	0	0	0	0	1	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0013	1805	1	0	1	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0014	1805	1	0	1	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0015	1969	1	0	1	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0016	1805	1	1	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0017	1805	1	1	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0018	1805	1	1	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0019	1805	1	1	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0020	1805	1	1	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0021	1805	1	1	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	t0022	1805	1	1	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf88_chr8_90953471_90990238	1/0	t0001	688	239	22	53	118	13	32	copy fasta	C8orf88	chr8	90953471	90990238
C8orf88_chr8_90953471_90990238	0/0	t0002	692	122	68	10	40	0	4	copy fasta	C8orf88	chr8	90953471	90990238
C8orf88_chr8_90953471_90990238	0/0	t0003	692	4	0	0	4	0	0	copy fasta	C8orf88	chr8	90953471	90990238
C8orf88_chr8_90953471_90990238	0/1	t0004	688	3	0	1	0	1	0	copy fasta	C8orf88	chr8	90953471	90990238
C8orf89_chr8_73236331_73264530	1/0	t0001	199	212	48	35	98	4	26	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/0	t0002	202	89	38	13	29	0	9	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/1	t0003	202	32	0	4	25	0	2	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/0	t0004	198	8	8	0	0	0	0	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/0	t0005	199	2	0	0	1	0	1	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/0	t0006	199	1	0	0	1	0	0	copy fasta	C8orf89	chr8	73236331	73264530
C8orf90_chr8_141509671_141523729	1/0	t0001	41	449	98	82	210	12	46	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/1	t0002	41	1	0	0	0	0	0	copy fasta	C8orf90	chr8	141509671	141523729
C9_chr5_39279140_39369495	0/0	t0001	1091	274	49	58	127	10	30	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	1/0	t0002	1091	68	33	16	15	1	2	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/1	t0003	1091	25	3	3	10	1	7	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	t0004	1091	9	0	0	9	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	t0005	1091	7	7	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	t0006	1091	5	5	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	t0007	1091	3	2	1	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	t0008	1091	1	0	0	0	0	1	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	t0009	1091	1	1	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	t0010	1091	1	0	0	1	0	0	copy fasta	C9	chr5	39279140	39369495
C9orf131_chr9_35037240_35050986	1/1	t0001	133	422	88	68	204	14	46	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	t0002	133	3	3	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	t0003	133	2	2	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	t0004	133	1	1	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf152_chr9_110194561_110213159	0/0	t0001	1968	83	6	21	40	4	12	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0002	1952	80	1	7	66	0	6	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0003	1960	57	3	4	43	0	7	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0004	1960	43	27	6	7	0	3	copy fasta	C9orf152	chr9	110194561	110213159