JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C9orf152_chr9_110194561_110213159	0/0	t0005	1964	41	1	9	24	3	4	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/1	t0006	1972	33	13	14	0	3	2	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0007	1960	18	11	5	0	1	1	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0008	1964	14	0	1	5	3	5	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0009	1964	8	0	0	7	1	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	1/0	t0010	1968	7	2	1	0	1	2	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0011	1968	7	0	0	6	0	1	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0012	1964	6	0	0	6	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0013	1960	6	5	1	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0014	1972	6	0	0	5	1	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0015	1952	4	0	0	4	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0016	1957	3	3	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0017	1952	3	0	3	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0018	1960	3	3	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0019	1968	2	2	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0020	1960	2	2	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0021	1954	2	2	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0022	1964	2	1	1	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0023	1960	2	2	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0024	1952	2	0	0	2	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0025	1968	1	1	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0026	1972	1	0	1	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0027	1954	1	1	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0028	1964	1	0	1	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0029	1968	1	0	1	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0030	1972	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0031	1968	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0032	1956	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0033	1964	1	0	0	0	0	1	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0034	1968	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0035	1952	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0036	1960	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0037	1960	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0038	1976	1	0	1	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0039	1968	1	0	0	0	1	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0040	1953	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0041	1964	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0042	1960	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0043	1960	1	1	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0044	1948	1	0	0	0	0	1	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0045	1948	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0046	1960	1	1	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0047	1968	1	1	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0048	1960	1	0	1	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0049	1960	1	1	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0050	1968	1	1	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0051	1960	1	1	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0052	1964	1	1	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0053	1960	1	1	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0054	1956	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159