JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C9orf152_chr9_110194561_110213159	0/0	t0055	1968	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	t0056	1968	1	0	0	0	0	1	copy fasta	C9orf152	chr9	110194561	110213159
C9orf153_chr9_86215265_86264657	1/0	t0001	1558	153	26	35	63	10	18	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/1	t0002	1558	148	36	22	71	3	15	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0003	1558	29	6	3	18	0	2	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0004	1558	19	0	8	0	4	7	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0005	1558	12	12	0	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0006	1558	3	2	1	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0007	1558	3	2	1	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0008	1554	2	2	0	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0009	1558	2	1	1	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0010	1558	2	1	1	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0011	1558	2	0	0	2	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0012	1558	1	0	0	1	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0013	1554	1	1	0	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0014	1558	1	0	0	1	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0015	1558	1	0	0	0	1	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0016	1558	1	0	0	0	0	1	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0017	1558	1	0	0	1	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0018	1558	1	0	0	1	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0019	1558	1	1	0	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	t0020	1558	1	0	0	0	0	1	copy fasta	C9orf153	chr9	86215265	86264657
C9orf24_chr9_34374019_34402810	1/1	t0001	341	447	90	75	220	14	46	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	t0002	341	1	0	1	0	0	0	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	t0003	341	1	0	1	0	0	0	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	t0004	381	1	0	1	0	0	0	copy fasta	C9orf24	chr9	34374019	34402810
C9orf40_chr9_74941583_74957912	1/1	t0001	1767	395	73	69	187	18	46	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	t0002	1767	4	4	0	0	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	t0003	1767	2	0	0	2	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	t0004	1767	2	2	0	0	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	t0005	1767	1	1	0	0	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	t0006	1767	1	0	0	1	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	t0007	1767	1	1	0	0	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	t0008	1767	1	0	0	1	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	t0009	1767	1	0	1	0	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	t0010	1767	1	0	0	1	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	t0011	1767	1	1	0	0	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf43_chr9_113405747_113434690	1/1	t0001	609	291	86	58	99	15	31	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	t0002	609	8	0	1	3	1	3	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	t0003	608	3	0	0	3	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	t0004	609	3	3	0	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	t0005	609	2	1	0	0	0	1	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	t0006	609	1	0	1	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	t0007	609	1	0	0	1	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	t0008	609	1	0	0	0	0	1	copy fasta	C9orf43	chr9	113405747	113434690
C9orf50_chr9_129607225_129626101	1/1	t0001	650	311	89	55	115	14	36	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	t0002	650	69	0	17	43	0	9	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	t0003	650	19	0	0	17	0	2	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	t0004	649	5	5	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	t0005	650	5	0	0	5	0	0	copy fasta	C9orf50	chr9	129607225	129626101