JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C9orf50_chr9_129607225_129626101	0/0	t0006	650	1	0	0	0	0	1	copy fasta	C9orf50	chr9	129607225	129626101
C9orf57_chr9_72046376_72065613	1/1	t0001	1091	341	63	51	192	6	27	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	t0002	1091	87	17	25	23	10	12	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	t0003	1086	9	8	1	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	t0004	1091	5	5	0	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	t0005	1091	3	3	0	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	t0006	1091	2	2	0	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	t0007	1091	1	0	0	1	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	t0008	1091	1	0	1	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	t0009	1091	1	0	0	0	0	1	copy fasta	C9orf57	chr9	72046376	72065613
C9orf72_chr9_27541546_27578481	0/0	t0001	1786	138	3	27	93	2	13	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0002	1786	108	12	20	57	3	16	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	1/1	t0003	1786	96	43	19	23	3	6	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0004	1786	58	13	13	25	1	6	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0005	1786	7	6	1	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0006	1787	7	5	0	0	0	2	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0007	1800	4	4	0	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0008	1786	4	0	0	0	0	4	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0009	1786	2	2	0	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0010	1786	2	1	0	0	1	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0011	1786	2	2	0	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0012	1786	1	0	1	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0013	1786	1	0	1	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0014	1786	1	1	0	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0015	1786	1	0	1	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0016	1786	1	0	0	1	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0017	1786	1	0	0	0	0	1	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0018	1786	1	0	0	1	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0019	1786	1	0	0	1	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0020	1786	1	0	0	1	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	t0021	1786	1	0	1	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf78_chr9_129822290_129840275	1/1	t0001	926	204	47	38	87	8	22	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0002	922	110	14	21	51	9	15	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0003	926	25	22	1	0	0	2	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0004	927	23	1	5	12	1	4	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0005	925	7	1	2	2	0	2	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0006	922	5	0	0	4	0	1	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0007	926	3	2	0	1	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0008	925	2	2	0	0	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0009	926	2	0	0	2	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0010	926	1	0	1	0	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0011	926	1	0	0	1	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0012	926	1	0	0	1	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0013	926	1	1	0	0	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	t0014	914	1	0	0	1	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf85_chr9_71906639_71978457	1/1	t0001	712	197	38	46	79	15	17	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	t0002	712	28	8	9	8	2	1	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	t0003	712	6	0	1	0	1	4	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	t0004	712	5	5	0	0	0	0	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	t0005	712	4	3	1	0	0	0	copy fasta	C9orf85	chr9	71906639	71978457