JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C9orf85_chr9_71906639_71978457	0/0	t0006	712	3	0	0	3	0	0	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	t0007	712	3	2	1	0	0	0	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	t0008	712	3	3	0	0	0	0	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	t0009	712	1	1	0	0	0	0	copy fasta	C9orf85	chr9	71906639	71978457
CA10_chr17_51625320_52163714	1/1	t0001	2193	69	23	16	19	1	8	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0002	2193	57	17	12	17	1	10	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0003	2193	14	13	1	0	0	0	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0004	2178	7	6	1	0	0	0	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0005	2193	2	2	0	0	0	0	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0006	2193	1	1	0	0	0	0	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0007	2193	1	0	0	1	0	0	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0008	2193	1	1	0	0	0	0	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0009	2193	1	0	0	1	0	0	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0010	2193	1	1	0	0	0	0	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0011	2178	1	1	0	0	0	0	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	t0012	2193	1	1	0	0	0	0	copy fasta	CA10	chr17	51625320	52163714
CA11_chr19_48632946_48651187	1/1	t0001	729	378	86	71	171	12	36	copy fasta	CA11	chr19	48632946	48651187
CA11_chr19_48632946_48651187	0/0	t0002	724	10	10	0	0	0	0	copy fasta	CA11	chr19	48632946	48651187
CA11_chr19_48632946_48651187	0/0	t0003	729	1	0	1	0	0	0	copy fasta	CA11	chr19	48632946	48651187
CA11_chr19_48632946_48651187	0/0	t0004	729	1	0	0	1	0	0	copy fasta	CA11	chr19	48632946	48651187
CA11_chr19_48632946_48651187	0/0	t0005	729	1	0	0	1	0	0	copy fasta	CA11	chr19	48632946	48651187
CA11_chr19_48632946_48651187	0/0	t0006	729	1	0	0	1	0	0	copy fasta	CA11	chr19	48632946	48651187
CA12_chr15_63316378_63386846	0/1	t0001	5037	68	12	4	45	0	6	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0002	5035	64	6	9	41	2	6	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0003	5037	35	4	3	26	1	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	1/0	t0004	5034	34	13	13	1	1	5	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0005	5034	27	1	0	21	1	4	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0006	5033	9	0	0	1	0	8	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0007	5036	9	9	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0008	5036	8	8	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0009	5038	7	4	0	1	0	2	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0010	5035	5	5	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0011	5033	5	2	2	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0012	5034	5	5	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0013	5034	5	0	4	0	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0014	5038	4	0	1	3	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0015	5037	4	0	4	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0016	5038	4	0	1	3	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0017	5035	4	4	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0018	5035	4	4	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0019	5037	4	2	1	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0020	5036	4	0	1	3	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0021	5036	3	0	0	2	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0022	5034	3	0	0	2	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0023	5035	2	2	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0024	5037	2	2	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0025	5034	2	0	1	0	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0026	5005	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0027	5039	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0028	5038	1	0	1	0	0	0	copy fasta	CA12	chr15	63316378	63386846