JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CA12_chr15_63316378_63386846	0/0	t0029	5038	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0030	5037	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0031	5039	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0032	5037	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0033	5038	1	0	1	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0034	5037	1	0	0	0	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0035	5037	1	0	1	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0036	5037	1	0	0	0	1	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0037	5036	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0038	5035	1	0	0	0	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0039	5034	1	0	1	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0040	5034	1	0	0	0	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0041	5035	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0042	5037	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0043	5036	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0044	5034	1	0	1	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0045	5036	1	0	1	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0046	5036	1	0	0	0	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0047	5035	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0048	5035	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0049	5034	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0050	5034	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0051	5034	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0052	5035	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0053	5035	1	0	0	0	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0054	5034	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0055	5034	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0056	5035	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0057	5035	1	0	1	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0058	5035	1	0	0	0	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0059	5034	1	0	1	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	t0060	5037	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA13_chr8_85240458_85289073	1/0	t0001	3096	138	25	20	73	3	16	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/1	t0002	3095	123	33	31	42	2	14	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0003	3096	14	1	1	11	0	1	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0004	3097	13	5	4	0	1	3	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0005	3096	9	7	2	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0006	3095	8	0	0	8	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0007	3095	6	5	1	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0008	3096	6	0	0	6	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0009	3095	4	4	0	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0010	3096	3	2	0	0	0	1	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0011	3095	3	0	2	0	0	1	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0012	3096	3	3	0	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0013	3095	2	0	0	0	0	2	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0014	3095	2	2	0	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0015	3096	2	0	1	0	1	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0016	3096	1	1	0	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0017	3095	1	1	0	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0018	3085	1	1	0	0	0	0	copy fasta	CA13	chr8	85240458	85289073