Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACVR2B_chr3_38448890_38498142	0/0	t0013	10226	4	0	1	2	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0014	10246	4	1	0	3	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0015	10236	4	0	1	2	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0016	10240	4	1	1	1	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0017	10224	4	4	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0018	10226	4	0	0	4	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0019	10199	3	0	0	3	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0020	10216	3	0	0	3	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0021	10204	3	0	0	3	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0022	10222	3	0	0	3	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0023	10242	3	1	0	2	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0024	10224	3	0	2	1	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0025	10246	3	0	0	3	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0026	10238	3	0	1	2	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0027	10234	3	0	0	2	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0028	10236	3	0	1	1	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0029	10228	3	0	3	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0030	10226	3	0	2	1	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0031	10213	3	3	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0032	10219	3	0	0	2	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0033	10219	3	0	1	2	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0034	10217	3	0	0	3	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0035	10200	2	0	0	2	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0036	10209	2	2	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0037	10218	2	0	0	0	0	2	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0038	10220	2	0	0	2	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0039	10215	2	2	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0040	10208	2	2	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0041	10208	2	0	2	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0042	10206	2	2	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0043	10208	2	0	1	1	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0044	10198	2	0	0	0	2	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0045	10196	2	0	1	0	1	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0046	10207	2	0	0	2	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0047	10218	2	1	1	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0048	10218	2	2	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0049	10234	2	0	0	1	0	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0050	10216	2	0	2	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0051	10214	2	2	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0052	10232	2	0	0	2	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0053	10230	2	0	0	0	1	1	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0054	10247	2	0	0	0	2	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0055	10241	2	0	0	2	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0056	10203	2	0	2	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0057	10239	2	0	0	0	0	2	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0058	10224	2	1	1	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0059	10216	2	0	1	1	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0060	10221	2	0	0	2	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0061	10214	2	1	1	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142
ACVR2B_chr3_38448890_38498142	0/0	t0062	10212	2	2	0	0	0	0	copy fasta	ACVR2B	chr3	38448890	38498142