JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CA13_chr8_85240458_85289073	0/0	t0019	3095	1	0	1	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0020	3095	1	0	0	1	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0021	3095	1	0	0	0	1	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0022	3095	1	0	0	1	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0023	3096	1	1	0	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0024	3103	1	0	0	1	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0025	3096	1	0	0	1	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0026	3096	1	1	0	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0027	3096	1	0	0	1	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0028	3095	1	0	0	1	0	0	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	t0029	3095	1	0	1	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA14_chr1_150252774_150270078	1/1	t0001	775	368	71	65	169	14	47	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	t0002	775	23	0	6	17	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	t0003	777	16	14	1	1	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	t0004	775	7	7	0	0	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	t0005	775	1	0	0	1	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	t0006	775	1	0	0	0	0	1	copy fasta	CA14	chr1	150252774	150270078
CA1_chr8_85322608_85383113	0/1	t0001	1045	184	66	33	64	4	16	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	1/0	t0002	1045	135	21	25	64	4	20	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	t0003	1045	1	0	0	0	0	1	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	t0004	1045	1	0	0	0	0	1	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	t0005	1045	1	1	0	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	t0006	1045	1	1	0	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	t0007	1045	1	1	0	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA2_chr8_85459007_85486493	1/1	t0001	780	315	74	54	137	12	36	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	t0002	780	11	10	1	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	t0003	780	5	5	0	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	t0004	780	2	0	2	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	t0005	780	1	0	0	1	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	t0006	780	1	0	1	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	t0007	780	1	1	0	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA3_chr8_85433859_85454040	0/1	t0001	938	178	48	36	68	13	12	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0002	939	119	7	15	81	1	15	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	1/0	t0003	939	39	17	9	1	2	9	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0004	938	10	1	2	5	0	2	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0005	938	10	10	0	0	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0006	939	1	1	0	0	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0007	939	1	1	0	0	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0008	961	1	0	0	1	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0009	939	1	0	0	1	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0010	938	1	0	0	0	0	1	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0011	938	1	0	0	1	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0012	938	1	1	0	0	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	t0013	938	1	0	0	0	0	1	copy fasta	CA3	chr8	85433859	85454040
CA4_chr17_60144973_60164546	1/1	t0001	185	352	83	66	151	14	36	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	t0002	185	23	10	2	11	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	t0003	185	2	2	0	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	t0004	185	2	2	0	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	t0005	185	1	1	0	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA5A_chr16_87883013_87941529	1/1	t0001	196	326	76	71	132	13	32	copy fasta	CA5A	chr16	87883013	87941529