JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CA5A_chr16_87883013_87941529	0/0	t0002	196	68	12	7	28	3	18	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	t0003	196	6	6	0	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5B_chrX_15733270_15793411	0/1	t0001	5884	99	21	12	50	3	12	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0002	5883	79	9	12	48	3	7	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0003	5886	25	0	12	7	3	3	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0004	5884	11	2	3	6	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0005	5885	6	0	0	4	0	2	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0006	5883	6	6	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0007	5883	6	5	1	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0008	5886	6	6	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0009	5884	4	4	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0010	5881	3	3	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0011	5884	2	1	1	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0012	5881	2	1	1	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0013	5881	2	2	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0014	5886	2	0	1	0	0	1	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0015	5879	1	1	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0016	5879	1	1	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0017	5885	1	0	0	1	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0018	5885	1	0	0	1	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0019	5885	1	0	0	0	0	1	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0020	5884	1	0	0	1	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	1/0	t0021	5884	1	0	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0022	5884	1	0	0	0	0	1	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0023	5884	1	0	0	0	0	1	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0024	5882	1	0	0	1	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0025	5883	1	0	0	1	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0026	5883	1	0	0	0	0	1	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0027	5883	1	1	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0028	5883	1	0	0	0	1	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0029	5881	1	1	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0030	5881	1	1	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0031	5883	1	1	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0032	5886	1	1	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0033	5886	1	0	0	0	1	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0034	5887	1	0	0	0	0	1	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	t0035	5887	1	1	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA6_chr1_8940868_8980092	0/0	t0001	411	320	77	41	154	12	36	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	1/1	t0002	408	92	7	33	35	6	9	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0003	411	10	3	0	5	0	2	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0004	411	9	0	2	7	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0005	411	5	2	0	3	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0006	411	4	4	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0007	411	3	2	1	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0008	411	3	0	2	0	0	1	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0009	411	2	2	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0010	411	1	0	1	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0011	411	1	1	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0012	411	1	0	0	1	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	t0013	408	1	0	0	1	0	0	copy fasta	CA6	chr1	8940868	8980092