JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CA7_chr16_66839414_66859147	1/1	t0001	724	366	79	58	176	14	37	copy fasta	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	t0002	724	16	12	2	0	0	2	copy fasta	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	t0003	724	9	1	8	0	0	0	copy fasta	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	t0004	724	2	2	0	0	0	0	copy fasta	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	t0005	724	1	0	0	0	0	1	copy fasta	CA7	chr16	66839414	66859147
CA8_chr8_60180412_60286400	0/0	t0001	4863	43	1	13	20	3	6	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0002	4862	39	2	8	26	1	2	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0003	4863	37	4	6	21	0	6	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0004	4863	36	13	9	9	2	3	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/1	t0005	4862	27	6	5	10	1	4	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0006	4862	24	10	2	10	1	1	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	1/0	t0007	4863	23	0	3	17	0	2	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0008	4863	15	1	5	1	4	4	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0009	4862	11	0	3	5	2	1	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0010	4863	9	0	1	6	0	2	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0011	4863	8	8	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0012	4860	6	6	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0013	4863	6	0	0	6	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0014	4863	4	3	0	0	0	1	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0015	4863	4	0	0	4	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0016	4863	4	2	2	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0017	4863	4	4	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0018	4863	3	1	0	0	0	2	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0019	4863	3	3	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0020	4863	3	3	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0021	4862	2	2	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0022	4863	2	1	1	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0023	4862	2	2	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0024	4863	2	2	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0025	4825	1	0	1	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0026	4862	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0027	4863	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0028	4862	1	0	0	1	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0029	4863	1	0	1	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0030	4862	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0031	4863	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0032	4863	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0033	4862	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0034	4862	1	0	0	1	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0035	4862	1	0	0	1	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0036	4862	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0037	4862	1	0	0	1	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0038	4863	1	0	1	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0039	4863	1	0	0	0	0	1	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0040	4863	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0041	4863	1	0	0	1	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0042	4862	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0043	4863	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0044	4863	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0045	4862	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400