JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CA8_chr8_60180412_60286400	0/0	t0046	4863	1	0	1	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0047	4860	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0048	4863	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0049	4862	1	0	0	1	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0050	4863	1	0	0	1	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	t0051	4863	1	0	0	0	0	1	copy fasta	CA8	chr8	60180412	60286400
CA9_chr9_35668928_35686159	1/0	t0001	167	383	90	57	185	15	35	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/1	t0002	167	62	6	25	14	1	15	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	t0003	167	1	0	0	1	0	0	copy fasta	CA9	chr9	35668928	35686159
CAAP1_chr9_26835685_26897802	1/1	t0001	1704	317	72	47	150	14	32	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0002	1704	36	8	20	0	4	4	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0003	1704	3	0	3	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0004	1704	2	2	0	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0005	1704	2	0	0	2	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0006	1704	2	2	0	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0007	1704	1	0	0	0	0	1	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0008	1704	1	0	0	1	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0009	1704	1	0	0	1	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0010	1704	1	1	0	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0011	1704	1	1	0	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0012	1704	1	0	0	1	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0013	1704	1	0	0	0	0	1	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0014	1704	1	0	0	1	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0015	1704	1	0	0	0	0	1	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	t0016	1704	1	0	0	0	0	1	copy fasta	CAAP1	chr9	26835685	26897802
CAB39L_chr13_49303650_49449064	0/0	t0001	2489	129	30	24	49	7	19	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/1	t0002	2489	99	20	23	43	1	11	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0003	2489	37	1	17	5	2	12	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0004	2489	20	17	2	1	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0005	2489	12	0	0	12	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0006	2489	11	11	0	0	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0007	2488	3	2	1	0	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0008	2489	1	0	0	0	0	1	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0009	2489	1	0	0	1	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0010	2489	1	0	0	1	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0011	2489	1	0	1	0	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0012	2489	1	0	0	1	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0013	2489	1	0	0	1	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0014	2489	1	0	0	1	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0015	2489	1	1	0	0	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0016	2489	1	1	0	0	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0017	2489	1	1	0	0	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	1/0	t0018	2489	1	0	0	0	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0019	2489	1	0	0	1	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	t0020	2489	1	0	0	0	0	1	copy fasta	CAB39L	chr13	49303650	49449064
CAB39_chr2_230707842_230826075	1/0	t0001	2804	95	8	25	45	6	10	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0002	2804	36	2	7	22	1	4	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0003	2804	31	1	1	28	0	1	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0004	2804	23	3	6	7	2	5	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/1	t0005	2802	12	0	5	5	0	1	copy fasta	CAB39	chr2	230707842	230826075