JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAB39_chr2_230707842_230826075	0/0	t0056	2804	1	0	1	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0057	2804	1	0	0	0	0	1	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0058	2804	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0059	2804	1	0	0	1	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0060	2804	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0061	2804	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0062	2804	1	0	0	0	0	1	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0063	2804	1	0	1	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0064	2802	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0065	2804	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0066	2804	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0067	2804	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0068	2804	1	0	0	0	1	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0069	2804	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0070	2804	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0071	2804	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	t0072	2804	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CABCOCO1_chr10_61657929_61771766	0/1	t0001	799	221	52	47	89	11	21	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	1/0	t0002	798	107	13	14	62	4	13	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	t0003	799	19	15	2	0	0	2	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	t0004	799	8	0	0	5	0	3	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	t0005	799	6	0	0	6	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	t0006	797	6	1	3	0	1	1	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	t0007	799	4	4	0	0	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	t0008	799	1	1	0	0	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	t0009	798	1	0	0	0	0	1	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	t0010	799	1	0	0	0	0	1	copy fasta	CABCOCO1	chr10	61657929	61771766
CABIN1_chr22_24006304_24183628	1/1	t0001	571	256	69	26	131	6	22	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	t0002	571	5	5	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	t0003	559	2	0	0	2	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	t0004	571	1	0	0	0	0	1	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	t0005	571	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	t0006	571	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	t0007	571	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	t0008	571	1	0	0	0	0	1	copy fasta	CABIN1	chr22	24006304	24183628
CABLES1_chr18_23130485_23265470	0/0	t0001	3381	61	5	12	38	1	5	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	1/0	t0002	3382	31	19	5	2	2	2	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/1	t0003	3382	26	5	5	10	0	5	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0004	3382	25	2	6	14	1	2	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0005	3381	16	1	2	9	2	2	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0006	3380	13	3	1	9	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0007	3381	9	7	2	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0008	3382	6	5	0	0	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0009	3381	5	0	3	1	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0010	3384	4	4	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0011	3380	4	0	0	4	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0012	3382	4	0	0	4	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0013	3380	4	3	1	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0014	3381	4	1	0	2	1	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0015	3381	4	1	3	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470