JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CABLES1_chr18_23130485_23265470	0/0	t0016	3382	4	4	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0017	3381	3	0	0	2	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0018	3381	3	0	3	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0019	3381	3	3	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0020	3381	2	0	1	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0021	3382	2	0	1	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0022	3382	2	0	2	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0023	3383	2	0	0	2	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0024	3382	2	2	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0025	3381	2	2	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0026	3382	2	2	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0027	3381	2	1	0	0	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0028	3382	2	0	0	2	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0029	3383	2	0	0	0	0	2	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0030	3352	1	0	1	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0031	3351	1	0	1	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0032	3382	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0033	3382	1	0	0	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0034	3380	1	0	1	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0035	3381	1	0	0	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0036	3383	1	0	0	0	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0037	3382	1	0	0	0	1	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0038	3381	1	0	1	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0039	3381	1	0	0	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0040	3382	1	0	0	0	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0041	3383	1	0	0	0	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0042	3381	1	0	0	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0043	3380	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0044	3382	1	0	0	0	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0045	3383	1	0	1	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0046	3381	1	0	1	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0047	3381	1	0	0	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0048	3383	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0049	3381	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0050	3380	1	0	0	0	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0051	3380	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0052	3381	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0053	3381	1	0	0	0	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0054	3381	1	0	0	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0055	3381	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0056	3382	1	0	1	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0057	3384	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	t0058	3381	1	0	0	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES2_chr20_62383634_62412285	1/1	t0001	2347	177	1	25	127	5	17	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0002	2347	65	22	18	20	2	3	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0003	2347	56	28	14	1	3	10	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0004	2347	28	12	11	0	1	4	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0005	2347	10	9	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0006	2347	9	9	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0007	2347	9	0	0	8	0	1	copy fasta	CABLES2	chr20	62383634	62412285