JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CABLES2_chr20_62383634_62412285	0/0	t0008	2347	7	5	2	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0009	2347	5	0	1	0	2	2	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0010	2347	5	1	4	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0011	2347	3	0	0	0	0	3	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0012	2347	3	1	2	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0013	2347	2	2	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0014	2347	2	0	0	0	0	2	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0015	2347	1	1	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0016	2347	1	1	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0017	2347	1	1	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0018	2347	1	1	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0019	2347	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0020	2347	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0021	2347	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0022	2347	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0023	2347	1	1	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0024	2347	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0025	2347	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0026	2347	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0027	2347	1	0	0	0	1	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0028	2347	1	1	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0029	2347	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0030	2347	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0031	2347	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0032	2347	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	t0033	2347	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABP1_chr12_120635626_120672324	1/1	t0001	485	417	94	76	184	18	43	copy fasta	CABP1	chr12	120635626	120672324
CABP1_chr12_120635626_120672324	0/0	t0002	485	1	0	0	0	0	1	copy fasta	CABP1	chr12	120635626	120672324
CABP2_chr11_67513912_67528446	1/1	t0001	348	371	93	72	148	14	42	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	t0002	348	3	1	0	0	2	0	copy fasta	CABP2	chr11	67513912	67528446
CABP4_chr11_67450354_67466752	1/0	t0001	3164	113	12	20	58	4	18	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0002	3150	43	41	2	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0003	3166	37	10	9	9	4	5	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0004	3170	22	0	13	9	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0005	3168	21	1	3	15	0	2	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0006	3170	13	1	0	12	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0007	3164	11	0	0	11	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0008	3166	10	1	5	1	3	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/1	t0009	3166	7	0	3	3	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0010	3164	5	1	2	1	0	1	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0011	3165	5	0	0	5	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0012	3169	5	5	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0013	3171	4	0	1	3	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0014	3168	4	0	3	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0015	3167	4	2	1	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0016	3166	4	3	0	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0017	3165	4	0	0	4	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0018	3172	4	1	0	3	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0019	3168	4	0	0	3	1	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0020	3165	4	0	0	2	0	2	copy fasta	CABP4	chr11	67450354	67466752