JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CABP4_chr11_67450354_67466752	0/0	t0021	3163	3	0	0	1	0	2	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0022	3169	3	0	0	3	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0023	3149	2	2	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0024	3164	2	0	0	2	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0025	3164	2	0	0	2	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0026	3164	2	0	0	0	0	2	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0027	3165	2	2	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0028	3164	1	0	0	0	0	1	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0029	3150	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0030	3151	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0031	3164	1	0	0	0	0	1	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0032	3164	1	0	0	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0033	3167	1	0	0	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0034	3163	1	0	0	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0035	3168	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0036	3164	1	0	0	0	1	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0037	3171	1	0	1	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0038	3165	1	0	0	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0039	3166	1	0	0	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0040	3164	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0041	3171	1	0	0	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0042	3170	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0043	3168	1	0	0	0	1	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0044	3166	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0045	3164	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0046	3174	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0047	3170	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0048	3167	1	0	1	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0049	3164	1	0	1	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0050	3168	1	0	0	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0051	3164	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0052	3165	1	0	0	1	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0053	3169	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0054	3166	1	0	1	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	t0055	3168	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP5_chr19_48024383_48049079	0/0	t0001	1330	102	2	26	57	4	13	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	1/0	t0002	1332	34	9	1	21	1	1	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0003	1334	30	11	9	6	3	1	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0004	1330	18	1	6	9	0	2	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0005	1332	16	1	3	8	0	4	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0006	1340	16	2	0	14	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0007	1336	14	10	1	1	0	2	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0008	1342	9	3	0	6	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0009	1332	9	4	0	3	2	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0010	1336	8	8	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0011	1346	8	0	3	3	0	2	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0012	1344	6	0	3	2	0	1	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0013	1338	5	0	0	5	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0014	1348	5	0	3	2	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	t0015	1334	4	1	0	1	1	1	copy fasta	CABP5	chr19	48024383	48049079