JoGo: Joint Open Genome and Omics Platform

Search by Gene

geneid	386724
ensemblid	ENSG00000176020.9
hgncid	24075
symbol	AMIGO3
name	adhesion molecule with Ig like domain 3
refseq_nuc	NM_198722.3
refseq_prot	NP_942015.1
ensembl_nuc	ENST00000320431.8
ensembl_prot	ENSP00000323096.7
mane_status	MANE Select
chr	chr3
start	49716829
end	49719684
strand	-
ver	v1.2
region	chr3:49716829-49719684
region5000	chr3:49711829-49724684
regionname0	AMIGO3_chr3_49716829_49719684
regionname5000	AMIGO3_chr3_49711829_49724684

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aa
a0001	1/1	504	322	84	67	120	18	31	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0002	0/0	504	4	4	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0003	0/0	504	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0004	0/0	504	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0005	0/0	504	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0006	0/0	504	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0007	0/0	504	1	0	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0008	0/0	504	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0009	0/0	504	1	0	0	0	0	1	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0010	0/0	504	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq
c0001	1/1	1515	317	82	66	119	18	30	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0002	0/0	1515	4	4	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0003	0/0	1515	2	2	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0004	0/0	1515	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0005	0/0	1515	1	0	0	0	0	1	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0006	0/0	1515	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0007	0/0	1515	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0008	0/0	1515	1	0	0	0	0	1	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0009	0/0	1515	1	0	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0010	0/0	1515	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0011	0/0	1515	1	0	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0012	0/0	1515	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0013	0/0	1515	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
c0014	0/0	1515	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta

thapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq
t0001	0/1	1342	271	54	57	116	13	30	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
t0002	1/0	1342	49	32	10	1	3	2	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
t0003	0/0	1342	6	0	0	6	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
t0004	0/0	1342	2	1	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
t0005	0/0	1342	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
t0006	0/0	1342	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
t0007	0/0	1342	1	0	0	0	1	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
t0008	0/0	1342	1	0	0	0	1	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
t0009	0/0	1342	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
t0010	0/0	1342	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
g0000	1/1	334	90	68	124	18	32	AMIGO3_chr3_49711829_49724684	AMIGO3

achapid	ahapid	chapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	acseq
a0001c0001	a0001	c0001	1/1	317	82	66	119	18	30	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0003	a0001	c0003	0/0	2	2	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0008	a0001	c0008	0/0	1	0	0	0	0	1	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0009	a0001	c0009	0/0	1	0	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0012	a0001	c0012	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0002c0002	a0002	c0002	0/0	4	4	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0003c0014	a0003	c0014	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0004c0013	a0004	c0013	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0005c0007	a0005	c0007	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0006c0010	a0006	c0010	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0007c0011	a0007	c0011	0/0	1	0	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0008c0006	a0008	c0006	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0009c0005	a0009	c0005	0/0	1	0	0	0	0	1	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0010c0004	a0010	c0004	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta

acthapid	ahapid	chapid	thapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	actseq
a0001c0001t0001	a0001	c0001	t0001	0/1	256	46	55	112	13	29	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0001t0002	a0001	c0001	t0002	1/0	47	32	10	0	3	1	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0001t0003	a0001	c0001	t0003	0/0	6	0	0	6	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0001t0004	a0001	c0001	t0004	0/0	2	1	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0001t0005	a0001	c0001	t0005	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0001t0006	a0001	c0001	t0006	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0001t0007	a0001	c0001	t0007	0/0	1	0	0	0	1	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0001t0008	a0001	c0001	t0008	0/0	1	0	0	0	1	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0001t0009	a0001	c0001	t0009	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0001t0010	a0001	c0001	t0010	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0003t0001	a0001	c0003	t0001	0/0	2	2	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0008t0001	a0001	c0008	t0001	0/0	1	0	0	0	0	1	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0009t0001	a0001	c0009	t0001	0/0	1	0	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0001c0012t0001	a0001	c0012	t0001	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0002c0002t0001	a0002	c0002	t0001	0/0	4	4	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0003c0014t0001	a0003	c0014	t0001	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0004c0013t0001	a0004	c0013	t0001	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0005c0007t0001	a0005	c0007	t0001	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0006c0010t0001	a0006	c0010	t0001	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0007c0011t0001	a0007	c0011	t0001	0/0	1	0	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0008c0006t0002	a0008	c0006	t0002	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0009c0005t0002	a0009	c0005	t0002	0/0	1	0	0	0	0	1	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta
a0010c0004t0001	a0010	c0004	t0001	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3	copy fasta

actghapid	ahapid	chapid	thapid	ghapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
a0001c0001t0001g0000	a0001	c0001	t0001	g0000	0/1	256	46	55	112	13	29	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0001t0002g0000	a0001	c0001	t0002	g0000	1/0	47	32	10	0	3	1	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0001t0003g0000	a0001	c0001	t0003	g0000	0/0	6	0	0	6	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0001t0004g0000	a0001	c0001	t0004	g0000	0/0	2	1	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0001t0005g0000	a0001	c0001	t0005	g0000	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0001t0006g0000	a0001	c0001	t0006	g0000	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0001t0007g0000	a0001	c0001	t0007	g0000	0/0	1	0	0	0	1	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0001t0008g0000	a0001	c0001	t0008	g0000	0/0	1	0	0	0	1	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0001t0009g0000	a0001	c0001	t0009	g0000	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0001t0010g0000	a0001	c0001	t0010	g0000	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0003t0001g0000	a0001	c0003	t0001	g0000	0/0	2	2	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0008t0001g0000	a0001	c0008	t0001	g0000	0/0	1	0	0	0	0	1	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0009t0001g0000	a0001	c0009	t0001	g0000	0/0	1	0	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0001c0012t0001g0000	a0001	c0012	t0001	g0000	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0002c0002t0001g0000	a0002	c0002	t0001	g0000	0/0	4	4	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0003c0014t0001g0000	a0003	c0014	t0001	g0000	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0004c0013t0001g0000	a0004	c0013	t0001	g0000	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0005c0007t0001g0000	a0005	c0007	t0001	g0000	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0006c0010t0001g0000	a0006	c0010	t0001	g0000	0/0	1	1	0	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0007c0011t0001g0000	a0007	c0011	t0001	g0000	0/0	1	0	1	0	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0008c0006t0002g0000	a0008	c0006	t0002	g0000	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3
a0009c0005t0002g0000	a0009	c0005	t0002	g0000	0/0	1	0	0	0	0	1	AMIGO3_chr3_49711829_49724684	AMIGO3
a0010c0004t0001g0000	a0010	c0004	t0001	g0000	0/0	1	0	0	1	0	0	AMIGO3_chr3_49711829_49724684	AMIGO3

sampleid	haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename
HG00099	hp1	a0001	c0001	t0001	g0000	EUR	GBR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00099	hp2	a0001	c0001	t0001	g0000	EUR	GBR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00140	hp1	a0001	c0001	t0001	g0000	EUR	GBR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00140	hp2	a0001	c0001	t0001	g0000	EUR	GBR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00280	hp1	a0001	c0001	t0008	g0000	EUR	FIN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00280	hp2	a0001	c0001	t0001	g0000	EUR	FIN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00323	hp1	a0001	c0001	t0001	g0000	EUR	FIN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00323	hp2	a0001	c0001	t0001	g0000	EUR	FIN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00408	hp1	a0003	c0014	t0001	g0000	EAS	CHS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00408	hp2	a0001	c0001	t0001	g0000	EAS	CHS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00544	hp1	a0001	c0001	t0001	g0000	EAS	CHS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00544	hp2	a0001	c0001	t0001	g0000	EAS	CHS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00597	hp1	a0001	c0001	t0003	g0000	EAS	CHS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00597	hp2	a0001	c0001	t0001	g0000	EAS	CHS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00609	hp1	a0001	c0001	t0001	g0000	EAS	CHS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00609	hp2	a0001	c0001	t0001	g0000	EAS	CHS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00639	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00639	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00642	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00642	hp2	a0001	c0001	t0004	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00733	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00733	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00738	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00738	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00741	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG00741	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01069	hp1	a0001	c0001	t0002	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01069	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01070	hp1	a0001	c0001	t0002	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01070	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01071	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01071	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01074	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01074	hp2	a0001	c0001	t0002	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01099	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01099	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01106	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01106	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01109	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01109	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01168	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01168	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01169	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01169	hp2	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01175	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01175	hp2	a0001	c0001	t0002	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01192	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01192	hp2	a0001	c0001	t0002	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01243	hp1	a0001	c0001	t0001	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01243	hp2	a0001	c0001	t0002	g0000	AMR	PUR	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01255	hp1	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01255	hp2	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01256	hp1	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01256	hp2	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01257	hp1	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01257	hp2	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01258	hp1	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01258	hp2	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01261	hp1	a0001	c0001	t0002	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01261	hp2	a0001	c0001	t0002	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01346	hp1	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01346	hp2	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01433	hp1	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01433	hp2	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01496	hp1	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01496	hp2	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01515	hp1	a0001	c0001	t0001	g0000	EUR	IBS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01515	hp2	a0001	c0001	t0001	g0000	EUR	IBS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01516	hp1	a0001	c0001	t0002	g0000	EUR	IBS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01516	hp2	a0001	c0001	t0001	g0000	EUR	IBS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01517	hp1	a0001	c0001	t0002	g0000	EUR	IBS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01517	hp2	a0001	c0001	t0001	g0000	EUR	IBS	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01884	hp1	a0001	c0001	t0002	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01884	hp2	a0006	c0010	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01928	hp1	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01928	hp2	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01934	hp1	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01934	hp2	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01952	hp1	a0001	c0009	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01952	hp2	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01978	hp1	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01978	hp2	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01981	hp1	a0001	c0001	t0002	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01981	hp2	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01993	hp1	a0007	c0011	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01993	hp2	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02004	hp1	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02004	hp2	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02027	hp1	a0008	c0006	t0002	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02027	hp2	a0001	c0001	t0001	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02071	hp1	a0001	c0001	t0001	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02071	hp2	a0001	c0001	t0001	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02074	hp1	a0001	c0001	t0001	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02074	hp2	a0001	c0001	t0003	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02083	hp1	a0001	c0001	t0001	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02083	hp2	a0001	c0001	t0001	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02129	hp1	a0001	c0001	t0001	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02129	hp2	a0001	c0001	t0001	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02135	hp1	a0001	c0001	t0001	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02135	hp2	a0001	c0001	t0001	g0000	EAS	KHV	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02145	hp1	a0001	c0001	t0004	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02145	hp2	a0001	c0001	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02257	hp1	a0001	c0001	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02257	hp2	a0001	c0001	t0002	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02258	hp1	a0001	c0001	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02258	hp2	a0001	c0001	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02280	hp1	a0001	c0001	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02280	hp2	a0001	c0001	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02300	hp1	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02300	hp2	a0001	c0001	t0001	g0000	AMR	PEL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02451	hp1	a0001	c0001	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02451	hp2	a0001	c0001	t0002	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02572	hp1	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02572	hp2	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02602	hp1	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02602	hp2	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02615	hp1	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02615	hp2	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02622	hp1	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02622	hp2	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02647	hp1	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02647	hp2	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02683	hp1	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02683	hp2	a0009	c0005	t0002	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02717	hp1	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02717	hp2	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02723	hp1	a0001	c0001	t0009	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02723	hp2	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02735	hp1	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02735	hp2	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02738	hp1	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02738	hp2	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02809	hp1	a0001	c0001	t0010	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02809	hp2	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02818	hp1	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02818	hp2	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02886	hp1	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02886	hp2	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02895	hp1	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02895	hp2	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02896	hp1	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02896	hp2	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02897	hp1	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02897	hp2	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02922	hp1	a0001	c0001	t0001	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02922	hp2	a0001	c0001	t0001	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02965	hp1	a0001	c0001	t0001	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02965	hp2	a0001	c0001	t0002	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02970	hp1	a0001	c0001	t0001	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02970	hp2	a0004	c0013	t0001	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02976	hp1	a0001	c0001	t0001	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02976	hp2	a0001	c0001	t0002	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03041	hp1	a0001	c0003	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03041	hp2	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03098	hp1	a0002	c0002	t0001	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03098	hp2	a0001	c0001	t0002	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03130	hp1	a0001	c0001	t0002	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03130	hp2	a0001	c0001	t0001	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03139	hp1	a0001	c0001	t0001	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03139	hp2	a0001	c0001	t0002	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03195	hp1	a0001	c0001	t0001	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03195	hp2	a0001	c0001	t0002	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03225	hp1	a0001	c0001	t0002	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03225	hp2	a0001	c0001	t0001	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03453	hp1	a0001	c0001	t0001	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03453	hp2	a0001	c0003	t0001	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03486	hp1	a0001	c0001	t0001	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03486	hp2	a0001	c0001	t0001	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03490	hp1	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03490	hp2	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03492	hp1	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03492	hp2	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03516	hp1	a0002	c0002	t0001	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03516	hp2	a0001	c0001	t0002	g0000	AFR	ESN	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03540	hp1	a0001	c0001	t0002	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03540	hp2	a0001	c0001	t0001	g0000	AFR	GWD	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03579	hp1	a0002	c0002	t0001	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03579	hp2	a0001	c0001	t0001	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03654	hp1	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03654	hp2	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03688	hp1	a0001	c0001	t0001	g0000	SAS	STU	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03688	hp2	a0001	c0001	t0001	g0000	SAS	STU	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03710	hp1	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03710	hp2	a0001	c0001	t0001	g0000	SAS	PJL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03834	hp1	a0001	c0001	t0001	g0000	SAS	BEB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03834	hp2	a0001	c0001	t0002	g0000	SAS	BEB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03942	hp1	a0001	c0001	t0001	g0000	SAS	BEB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03942	hp2	a0001	c0001	t0001	g0000	SAS	BEB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG04115	hp1	a0001	c0001	t0001	g0000	SAS	STU	AMIGO3_chr3_49711829_49724684	AMIGO3
HG04115	hp2	a0001	c0001	t0001	g0000	SAS	STU	AMIGO3_chr3_49711829_49724684	AMIGO3
HG04184	hp1	a0001	c0001	t0001	g0000	SAS	BEB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG04184	hp2	a0001	c0001	t0001	g0000	SAS	BEB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG04204	hp1	a0001	c0001	t0001	g0000	SAS	STU	AMIGO3_chr3_49711829_49724684	AMIGO3
HG04204	hp2	a0001	c0001	t0001	g0000	SAS	STU	AMIGO3_chr3_49711829_49724684	AMIGO3
HG04228	hp1	a0001	c0008	t0001	g0000	SAS	STU	AMIGO3_chr3_49711829_49724684	AMIGO3
HG04228	hp2	a0001	c0001	t0001	g0000	SAS	STU	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18522	hp1	a0001	c0001	t0001	g0000	AFR	YRI	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18522	hp2	a0001	c0001	t0001	g0000	AFR	YRI	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18612	hp1	a0001	c0001	t0001	g0000	EAS	CHB	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18612	hp2	a0001	c0001	t0001	g0000	EAS	CHB	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18747	hp1	a0001	c0001	t0001	g0000	EAS	CHB	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18747	hp2	a0001	c0001	t0003	g0000	EAS	CHB	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18906	hp1	a0001	c0001	t0006	g0000	AFR	YRI	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18906	hp2	a0001	c0001	t0001	g0000	AFR	YRI	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18939	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18939	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18940	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18940	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18944	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18944	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18945	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18945	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18946	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18946	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18949	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18949	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18951	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18951	hp2	a0010	c0004	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18952	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18952	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18953	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18953	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18954	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18954	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18960	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18960	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18961	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18961	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18965	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18965	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18966	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18966	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18967	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18967	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18968	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18968	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18971	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18971	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18972	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18972	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18973	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18973	hp2	a0001	c0001	t0005	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18974	hp1	a0001	c0012	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18974	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18978	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18978	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18979	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18979	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18982	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18982	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18983	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18983	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18984	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18984	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18986	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18986	hp2	a0005	c0007	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18988	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18988	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18993	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18993	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18995	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18995	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18997	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18997	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18998	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18998	hp2	a0001	c0001	t0003	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18999	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18999	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19006	hp1	a0001	c0001	t0003	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19006	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19010	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19010	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19030	hp1	a0001	c0001	t0002	g0000	AFR	LWK	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19030	hp2	a0001	c0001	t0002	g0000	AFR	LWK	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19043	hp1	a0001	c0001	t0002	g0000	AFR	LWK	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19043	hp2	a0001	c0001	t0001	g0000	AFR	LWK	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19057	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19057	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19063	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19063	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19064	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19064	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19065	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19065	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19066	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19066	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19070	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19070	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19072	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19072	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19079	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19079	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19080	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19080	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19082	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19082	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19085	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19085	hp2	a0001	c0001	t0003	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19087	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19087	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19088	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19088	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19090	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19090	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19091	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19091	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19240	hp1	a0001	c0001	t0002	g0000	AFR	YRI	AMIGO3_chr3_49711829_49724684	AMIGO3
NA19240	hp2	a0001	c0001	t0002	g0000	AFR	YRI	AMIGO3_chr3_49711829_49724684	AMIGO3
NA20129	hp1	a0001	c0001	t0001	g0000	AFR	ASW	AMIGO3_chr3_49711829_49724684	AMIGO3
NA20129	hp2	a0001	c0001	t0002	g0000	AFR	ASW	AMIGO3_chr3_49711829_49724684	AMIGO3
NA20752	hp1	a0001	c0001	t0007	g0000	EUR	TSI	AMIGO3_chr3_49711829_49724684	AMIGO3
NA20752	hp2	a0001	c0001	t0002	g0000	EUR	TSI	AMIGO3_chr3_49711829_49724684	AMIGO3
NA20805	hp1	a0001	c0001	t0001	g0000	EUR	TSI	AMIGO3_chr3_49711829_49724684	AMIGO3
NA20805	hp2	a0001	c0001	t0001	g0000	EUR	TSI	AMIGO3_chr3_49711829_49724684	AMIGO3
NA20905	hp1	a0001	c0001	t0001	g0000	SAS	GIH	AMIGO3_chr3_49711829_49724684	AMIGO3
NA20905	hp2	a0001	c0001	t0001	g0000	SAS	GIH	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01123	hp1	a0001	c0001	t0001	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG01123	hp2	a0001	c0001	t0002	g0000	AMR	CLM	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02486	hp1	a0001	c0001	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02486	hp2	a0001	c0001	t0002	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02559	hp1	a0001	c0001	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG02559	hp2	a0002	c0002	t0001	g0000	AFR	ACB	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03471	hp1	a0001	c0001	t0001	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG03471	hp2	a0001	c0001	t0002	g0000	AFR	MSL	AMIGO3_chr3_49711829_49724684	AMIGO3
HG06807	hp1	a0001	c0001	t0001	g0000	AFR	USA	AMIGO3_chr3_49711829_49724684	AMIGO3
HG06807	hp2	a0001	c0001	t0001	g0000	AFR	USA	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18955	hp1	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA18955	hp2	a0001	c0001	t0001	g0000	EAS	JPT	AMIGO3_chr3_49711829_49724684	AMIGO3
NA20300	hp1	a0001	c0001	t0001	g0000	AFR	USA	AMIGO3_chr3_49711829_49724684	AMIGO3
NA20300	hp2	a0001	c0001	t0002	g0000	AFR	USA	AMIGO3_chr3_49711829_49724684	AMIGO3
NA21309	hp1	a0001	c0001	t0001	g0000	AFR	LWK	AMIGO3_chr3_49711829_49724684	AMIGO3
NA21309	hp2	a0001	c0001	t0002	g0000	AFR	LWK	AMIGO3_chr3_49711829_49724684	AMIGO3
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0000	REF	REF	AMIGO3_chr3_49711829_49724684	AMIGO3
homoSapiens_grch38	hp1	a0001	c0001	t0002	g0000	REF	REF	AMIGO3_chr3_49711829_49724684	AMIGO3

chr:pos	ref	alt	# # of ahapid:amio-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	chr	pos
chr3:49718223	G G	A A	1	a0006 a0006	1	HG01884.hp2 HG01884.hp2	missense_variant	MODERATE	c.1243C>T c.1243C>T	p.Arg415Cys p.Arg415Cys	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	1462/2856	1243/1515	415/504	chr3	49718223
chr3:49718309	G G	T T	1	a0005 a0005	1	NA18986.hp2 NA18986.hp2	missense_variant	MODERATE	c.1157C>A c.1157C>A	p.Thr386Asn p.Thr386Asn	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	1376/2856	1157/1515	386/504	chr3	49718309
chr3:49718388	G G	A A	1	a0007 a0007	1	HG01993.hp1 HG01993.hp1	missense_variant	MODERATE	c.1078C>T c.1078C>T	p.His360Tyr p.His360Tyr	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	1297/2856	1078/1515	360/504	chr3	49718388
chr3:49718696	G G	A A	1	a0004 a0004	1	HG02970.hp2 HG02970.hp2	missense_variant	MODERATE	c.770C>T c.770C>T	p.Pro257Leu p.Pro257Leu	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	989/2856	770/1515	257/504	chr3	49718696
chr3:49718727	G G	T T	1	a0008 a0008	1	HG02027.hp1 HG02027.hp1	missense_variant	MODERATE	c.739C>A c.739C>A	p.Arg247Ser p.Arg247Ser	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	958/2856	739/1515	247/504	chr3	49718727
chr3:49718927	A A	G G	1	a0009 a0009	1	HG02683.hp2 HG02683.hp2	missense_variant	MODERATE	c.539T>C c.539T>C	p.Leu180Pro p.Leu180Pro	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	758/2856	539/1515	180/504	chr3	49718927
chr3:49718987	C C	G G	1	a0010 a0010	1	NA18951.hp2 NA18951.hp2	missense_variant	MODERATE	c.479G>C c.479G>C	p.Ser160Thr p.Ser160Thr	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	698/2856	479/1515	160/504	chr3	49718987
chr3:49719078	C C	T T	1	a0002 a0002	4	HG02559.hp2 HG03098.hp1 HG03516.hp1 others(1): Show HG02559.hp2 HG03098.hp1 HG03516.hp1 HG03579.hp1	missense_variant	MODERATE	c.388G>A c.388G>A	p.Asp130Asn p.Asp130Asn	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	607/2856	388/1515	130/504	chr3	49719078
chr3:49719122	T T	G G	1	a0003 a0003	1	HG00408.hp1 HG00408.hp1	missense_variant	MODERATE	c.344A>C c.344A>C	p.Asp115Ala p.Asp115Ala	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	563/2856	344/1515	115/504	chr3	49719122

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	chr	pos
chr3:49718038	G G	A A	1	a0001c0008 a0001c0008	1	HG04228.hp1 HG04228.hp1	synonymous_variant	LOW	c.1428C>T c.1428C>T	p.Phe476Phe p.Phe476Phe	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	1647/2856	1428/1515	476/504	chr3	49718038
chr3:49718065	G G	A A	1	a0001c0009 a0001c0009	1	HG01952.hp1 HG01952.hp1	synonymous_variant	LOW	c.1401C>T c.1401C>T	p.Arg467Arg p.Arg467Arg	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	1620/2856	1401/1515	467/504	chr3	49718065
chr3:49718440	T T	C C	1	a0001c0012 a0001c0012	1	NA18974.hp1 NA18974.hp1	synonymous_variant	LOW	c.1026A>G c.1026A>G	p.Val342Val p.Val342Val	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	1245/2856	1026/1515	342/504	chr3	49718440
chr3:49718779	G G	A A	1	a0001c0003 a0001c0003	2	HG03041.hp1 HG03453.hp2 HG03041.hp1 HG03453.hp2	synonymous_variant	LOW	c.687C>T c.687C>T	p.His229His p.His229His	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	906/2856	687/1515	229/504	chr3	49718779

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr3:49716909	G G	A A	1	a0001c0001t0009 a0001c0001t0009	1	HG02723.hp1 HG02723.hp1	3_prime_UTR_variant	MODIFIER	c.1042C>T c.1042C>T	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	1042	chr3	49716909
chr3:49717007	C C	A A	1	a0001c0001t0010 a0001c0001t0010	1	HG02809.hp1 HG02809.hp1	3_prime_UTR_variant	MODIFIER	c.944G>T c.944G>T	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	944	chr3	49717007
chr3:49717076	G G	A A	1	a0001c0001t0006 a0001c0001t0006	1	NA18906.hp1 NA18906.hp1	3_prime_UTR_variant	MODIFIER	c.875C>T c.875C>T	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	875	chr3	49717076
chr3:49717254	C C	T T	1	a0001c0001t0008 a0001c0001t0008	1	HG00280.hp1 HG00280.hp1	3_prime_UTR_variant	MODIFIER	c.697G>A c.697G>A	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	697	chr3	49717254
chr3:49717469	C C	T T	1	a0001c0001t0003 a0001c0001t0003	6	HG00597.hp1 HG02074.hp2 NA18747.hp2 others(3): Show HG00597.hp1 HG02074.hp2 NA18747.hp2 NA18998.hp2 NA19006.hp1 NA19085.hp2	3_prime_UTR_variant	MODIFIER	c.482G>A c.482G>A	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	482	chr3	49717469
chr3:49717528	C C	T T	1	a0001c0001t0007 a0001c0001t0007	1	NA20752.hp1 NA20752.hp1	3_prime_UTR_variant	MODIFIER	c.423G>A c.423G>A	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	423	chr3	49717528
chr3:49717537	T T	C C	19	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(16): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0003t0001 a0001c0008t0001 a0001c0009t0001 a0001c0012t0001 a0002c0002t0001 a0003c0014t0001 a0004c0013t0001 a0005c0007t0001 a0006c0010t0001 a0007c0011t0001 a0010c0004t0001	284	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(281): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00733.hp1 HG00733.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp2 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01516.hp2 HG01517.hp2 HG01884.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02027.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02083.hp1 HG02083.hp2 HG02129.hp1 HG02129.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02622.hp2 HG02683.hp1 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03688.hp1 HG03688.hp2 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18940.hp2 NA18944.hp1 NA18944.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18946.hp2 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18955.hp2 NA18960.hp1 NA18960.hp2 NA18961.hp1 NA18961.hp2 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18967.hp2 NA18968.hp1 NA18968.hp2 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18986.hp1 NA18986.hp2 NA18988.hp1 NA18988.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19006.hp1 NA19006.hp2 NA19010.hp1 NA19010.hp2 NA19043.hp2 NA19057.hp1 NA19057.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19082.hp1 NA19082.hp2 NA19085.hp1 NA19085.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19088.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA20129.hp1 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.414A>G c.414A>G	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	414	chr3	49717537
chr3:49717771	G G	T T	1	a0001c0001t0005 a0001c0001t0005	1	NA18973.hp2 NA18973.hp2	3_prime_UTR_variant	MODIFIER	c.180C>A c.180C>A	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	180	chr3	49717771
chr3:49719653	G G	C C	1	a0001c0001t0004 a0001c0001t0004	2	HG00642.hp2 HG02145.hp1 HG00642.hp2 HG02145.hp1	5_prime_UTR_variant	MODIFIER	c.-188C>G c.-188C>G	AMIGO3	ENSG00000176020.9	transcript	ENST00000320431.8	protein_coding	1/1	188	chr3	49719653

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	distance	status	chr	pos

Search by Gene

Search

🧬 JoGo Online Haplotype Explorer AMIGO3_chr3_49711829_49724684

JoGo Local Haplotype Explorer (on iGV) AMIGO3_chr3_49711829_49724684

🧬 Gene Summary

Translation Multiple Alignment View

LD View

AAmino acid (protein) Level Haplotype Info (Total: 10)

CCoding Level Haplotype Info (Total: 14)

TTranscript Level Haplotype Info (Total: 10)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 14)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 23)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 23)

Haplotype Details by Sample (Haploid Level) (Total: 334)

AAmino acid (protein) Level Variants (Effect to Protein Coding Variants) (Total: 9)

CCoding Level Variants (Synonymous Mutations) (Total: 4)

TTranscript Level Variants (5'UTR+3'UTR) (Total: 9)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

Genealogies

External Link

Annotation (Repeats)

Annotation (SNP Array)