Joint Open Genome and Omics Platform (JoGo)

Search by Gene

geneid	3233
ensemblid	ENSG00000170166.6
hgncid	5138
symbol	HOXD4
name	homeobox D4
refseq_nuc	NM_014621.3
refseq_prot	NP_055436.2
ensembl_nuc	ENST00000306324.4
ensembl_prot	ENSP00000302548.3
mane_status	MANE Select
chr	chr2
start	176151550
end	176153226
strand	+
ver	v1.2
region	chr2:176151550-176153226
region5000	chr2:176146550-176158226
regionname0	HOXD4_chr2_176151550_176153226
regionname5000	HOXD4_chr2_176146550_176158226

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aa
a0001	1/1	255	277	46	40	149	13	27	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0002	0/0	255	71	32	21	5	1	12	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0003	0/0	255	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0004	0/0	255	1	0	0	0	0	1	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0005	0/0	255	1	0	1	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0006	0/0	255	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq
c0001	1/1	768	276	46	40	148	13	27	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
c0002	0/0	768	65	26	21	5	1	12	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
c0003	0/0	768	5	5	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
c0004	0/0	768	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
c0005	0/0	768	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
c0006	0/0	768	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
c0007	0/0	768	1	0	1	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
c0008	0/0	768	1	0	0	1	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
c0009	0/0	768	1	0	0	0	0	1	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta

thapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq
t0001	1/1	369	309	74	43	146	13	31	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
t0002	0/0	369	22	5	7	5	0	5	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
t0003	0/0	369	17	0	12	0	1	4	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
t0004	0/0	369	3	0	0	3	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
t0005	0/0	369	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
g0001	1/1	327	72	57	146	14	36	HOXD4_chr2_176146550_176158226	HOXD4
g0002	0/0	14	1	4	5	0	4	HOXD4_chr2_176146550_176158226	HOXD4
g0003	0/0	4	4	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
g0004	0/0	2	0	0	2	0	0	HOXD4_chr2_176146550_176158226	HOXD4
g0005	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
g0006	0/0	1	0	0	1	0	0	HOXD4_chr2_176146550_176158226	HOXD4
g0007	0/0	1	0	1	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
g0008	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
g0009	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4

achapid	ahapid	chapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	acseq
a0001c0001	a0001	c0001	1/1	276	46	40	148	13	27	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0001c0008	a0001	c0008	0/0	1	0	0	1	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0002c0002	a0002	c0002	0/0	65	26	21	5	1	12	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0002c0003	a0002	c0003	0/0	5	5	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0002c0006	a0002	c0006	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0003c0005	a0003	c0005	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0004c0009	a0004	c0009	0/0	1	0	0	0	0	1	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0005c0007	a0005	c0007	0/0	1	0	1	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0006c0004	a0006	c0004	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta

acthapid	ahapid	chapid	thapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	actseq
a0001c0001t0001	a0001	c0001	t0001	1/1	272	45	40	145	13	27	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0001c0001t0004	a0001	c0001	t0004	0/0	3	0	0	3	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0001c0001t0005	a0001	c0001	t0005	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0001c0008t0001	a0001	c0008	t0001	0/0	1	0	0	1	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0002c0002t0001	a0002	c0002	t0001	0/0	26	21	2	0	0	3	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0002c0002t0002	a0002	c0002	t0002	0/0	22	5	7	5	0	5	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0002c0002t0003	a0002	c0002	t0003	0/0	17	0	12	0	1	4	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0002c0003t0001	a0002	c0003	t0001	0/0	5	5	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0002c0006t0001	a0002	c0006	t0001	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0003c0005t0001	a0003	c0005	t0001	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0004c0009t0001	a0004	c0009	t0001	0/0	1	0	0	0	0	1	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0005c0007t0001	a0005	c0007	t0001	0/0	1	0	1	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta
a0006c0004t0001	a0006	c0004	t0001	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4	copy fasta

actghapid	ahapid	chapid	thapid	ghapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
a0001c0001t0001g0001	a0001	c0001	t0001	g0001	1/1	257	40	37	139	13	26	HOXD4_chr2_176146550_176158226	HOXD4
a0001c0001t0001g0002	a0001	c0001	t0001	g0002	0/0	8	0	2	5	0	1	HOXD4_chr2_176146550_176158226	HOXD4
a0001c0001t0001g0003	a0001	c0001	t0001	g0003	0/0	4	4	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0001c0001t0001g0006	a0001	c0001	t0001	g0006	0/0	1	0	0	1	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0001c0001t0001g0007	a0001	c0001	t0001	g0007	0/0	1	0	1	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0001c0001t0001g0008	a0001	c0001	t0001	g0008	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0001c0001t0004g0001	a0001	c0001	t0004	g0001	0/0	3	0	0	3	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0001c0001t0005g0001	a0001	c0001	t0005	g0001	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0001c0008t0001g0001	a0001	c0008	t0001	g0001	0/0	1	0	0	1	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0002t0001g0001	a0002	c0002	t0001	g0001	0/0	25	20	2	0	0	3	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0002t0001g0005	a0002	c0002	t0001	g0005	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0002t0002g0001	a0002	c0002	t0002	g0001	0/0	17	4	7	3	0	3	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0002t0002g0002	a0002	c0002	t0002	g0002	0/0	2	0	0	0	0	2	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0002t0002g0004	a0002	c0002	t0002	g0004	0/0	2	0	0	2	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0002t0002g0009	a0002	c0002	t0002	g0009	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0002t0003g0001	a0002	c0002	t0003	g0001	0/0	15	0	10	0	1	4	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0002t0003g0002	a0002	c0002	t0003	g0002	0/0	2	0	2	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0003t0001g0001	a0002	c0003	t0001	g0001	0/0	4	4	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0003t0001g0002	a0002	c0003	t0001	g0002	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0002c0006t0001g0001	a0002	c0006	t0001	g0001	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0003c0005t0001g0001	a0003	c0005	t0001	g0001	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0004c0009t0001g0002	a0004	c0009	t0001	g0002	0/0	1	0	0	0	0	1	HOXD4_chr2_176146550_176158226	HOXD4
a0005c0007t0001g0001	a0005	c0007	t0001	g0001	0/0	1	0	1	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4
a0006c0004t0001g0001	a0006	c0004	t0001	g0001	0/0	1	1	0	0	0	0	HOXD4_chr2_176146550_176158226	HOXD4

sampleid	haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	HOXD4_chr2_176146550_176158226	HOXD4
HG00140	hp2	a0001	c0001	t0001	g0001	EUR	GBR	HOXD4_chr2_176146550_176158226	HOXD4
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	HOXD4_chr2_176146550_176158226	HOXD4
HG00280	hp2	a0001	c0001	t0001	g0001	EUR	FIN	HOXD4_chr2_176146550_176158226	HOXD4
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	HOXD4_chr2_176146550_176158226	HOXD4
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	HOXD4_chr2_176146550_176158226	HOXD4
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00423	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00621	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00639	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00642	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00673	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HOXD4_chr2_176146550_176158226	HOXD4
HG00733	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00733	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00738	hp2	a0002	c0002	t0003	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01069	hp2	a0002	c0002	t0002	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01070	hp2	a0002	c0002	t0003	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01071	hp1	a0002	c0002	t0002	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01071	hp2	a0002	c0002	t0003	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01074	hp2	a0002	c0002	t0002	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01099	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01106	hp2	a0002	c0002	t0002	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01109	hp1	a0002	c0002	t0003	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01109	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01167	hp2	a0002	c0002	t0002	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01168	hp1	a0002	c0002	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01168	hp2	a0005	c0007	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01169	hp1	a0002	c0002	t0002	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01169	hp2	a0002	c0002	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01192	hp2	a0002	c0002	t0003	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01243	hp2	a0002	c0002	t0003	g0002	AMR	PUR	HOXD4_chr2_176146550_176158226	HOXD4
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01255	hp2	a0002	c0002	t0003	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01256	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01258	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01261	hp1	a0002	c0002	t0003	g0002	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01261	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01358	hp1	a0002	c0002	t0003	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01358	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01433	hp1	a0001	c0001	t0001	g0002	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01433	hp2	a0002	c0002	t0003	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01496	hp1	a0002	c0002	t0002	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HOXD4_chr2_176146550_176158226	HOXD4
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	HOXD4_chr2_176146550_176158226	HOXD4
HG01515	hp2	a0001	c0001	t0001	g0001	EUR	IBS	HOXD4_chr2_176146550_176158226	HOXD4
HG01517	hp1	a0002	c0002	t0003	g0001	EUR	IBS	HOXD4_chr2_176146550_176158226	HOXD4
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	HOXD4_chr2_176146550_176158226	HOXD4
HG01884	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG01884	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG01928	hp1	a0001	c0001	t0001	g0007	AMR	PEL	HOXD4_chr2_176146550_176158226	HOXD4
HG01928	hp2	a0001	c0001	t0001	g0002	AMR	PEL	HOXD4_chr2_176146550_176158226	HOXD4
HG01975	hp1	a0002	c0002	t0003	g0001	AMR	PEL	HOXD4_chr2_176146550_176158226	HOXD4
HG01975	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HOXD4_chr2_176146550_176158226	HOXD4
HG01978	hp1	a0002	c0002	t0003	g0001	AMR	PEL	HOXD4_chr2_176146550_176158226	HOXD4
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HOXD4_chr2_176146550_176158226	HOXD4
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HOXD4_chr2_176146550_176158226	HOXD4
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HOXD4_chr2_176146550_176158226	HOXD4
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02015	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02040	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02055	hp2	a0001	c0001	t0005	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02056	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02071	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02074	hp1	a0002	c0002	t0002	g0004	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02074	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02083	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02129	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02132	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02135	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HOXD4_chr2_176146550_176158226	HOXD4
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02145	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02155	hp1	a0001	c0001	t0001	g0001	EAS	CDX	HOXD4_chr2_176146550_176158226	HOXD4
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	HOXD4_chr2_176146550_176158226	HOXD4
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	HOXD4_chr2_176146550_176158226	HOXD4
HG02165	hp2	a0002	c0002	t0002	g0004	EAS	CDX	HOXD4_chr2_176146550_176158226	HOXD4
HG02257	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02257	hp2	a0002	c0006	t0001	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02258	hp1	a0002	c0003	t0001	g0002	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02258	hp2	a0002	c0002	t0002	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02300	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HOXD4_chr2_176146550_176158226	HOXD4
HG02300	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HOXD4_chr2_176146550_176158226	HOXD4
HG02451	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02451	hp2	a0002	c0002	t0001	g0005	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02572	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02572	hp2	a0002	c0002	t0002	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02602	hp1	a0002	c0002	t0002	g0002	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG02602	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG02615	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02615	hp2	a0001	c0001	t0001	g0003	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02622	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02622	hp2	a0002	c0002	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02630	hp1	a0001	c0001	t0001	g0008	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02630	hp2	a0002	c0002	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02647	hp2	a0002	c0002	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02717	hp1	a0002	c0002	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02717	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG02735	hp2	a0002	c0002	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG02738	hp1	a0004	c0009	t0001	g0002	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG02738	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG02809	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02809	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02886	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02886	hp2	a0002	c0002	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02895	hp1	a0002	c0002	t0002	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02895	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02896	hp1	a0002	c0002	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02896	hp2	a0003	c0005	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02897	hp1	a0002	c0002	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02897	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG02922	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG02922	hp2	a0002	c0003	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG02965	hp2	a0002	c0002	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG02970	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG02970	hp2	a0002	c0002	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG02976	hp1	a0002	c0002	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03017	hp2	a0002	c0002	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03098	hp1	a0002	c0002	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03098	hp2	a0001	c0001	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03130	hp1	a0002	c0002	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG03130	hp2	a0001	c0001	t0001	g0003	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG03139	hp1	a0002	c0002	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG03139	hp2	a0001	c0001	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG03195	hp1	a0001	c0001	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG03209	hp1	a0006	c0004	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03209	hp2	a0001	c0001	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03225	hp2	a0002	c0002	t0002	g0009	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03239	hp1	a0002	c0002	t0003	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03453	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03453	hp2	a0001	c0001	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03486	hp1	a0002	c0003	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03486	hp2	a0001	c0001	t0001	g0003	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03490	hp1	a0002	c0002	t0003	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03490	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03492	hp1	a0002	c0002	t0003	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03492	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03516	hp1	a0002	c0002	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG03516	hp2	a0001	c0001	t0001	g0001	AFR	ESN	HOXD4_chr2_176146550_176158226	HOXD4
HG03540	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG03540	hp2	a0001	c0001	t0001	g0001	AFR	GWD	HOXD4_chr2_176146550_176158226	HOXD4
HG03579	hp1	a0002	c0002	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03579	hp2	a0001	c0001	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03654	hp1	a0002	c0002	t0002	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03654	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03669	hp2	a0002	c0002	t0003	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	HOXD4_chr2_176146550_176158226	HOXD4
HG03688	hp2	a0001	c0001	t0001	g0001	SAS	STU	HOXD4_chr2_176146550_176158226	HOXD4
HG03704	hp1	a0002	c0002	t0002	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03704	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03710	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HOXD4_chr2_176146550_176158226	HOXD4
HG03831	hp1	a0002	c0002	t0002	g0001	SAS	BEB	HOXD4_chr2_176146550_176158226	HOXD4
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	HOXD4_chr2_176146550_176158226	HOXD4
HG03834	hp1	a0001	c0001	t0001	g0001	SAS	BEB	HOXD4_chr2_176146550_176158226	HOXD4
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	HOXD4_chr2_176146550_176158226	HOXD4
HG03927	hp1	a0001	c0001	t0001	g0001	SAS	BEB	HOXD4_chr2_176146550_176158226	HOXD4
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	HOXD4_chr2_176146550_176158226	HOXD4
HG04115	hp1	a0002	c0002	t0001	g0001	SAS	STU	HOXD4_chr2_176146550_176158226	HOXD4
HG04115	hp2	a0001	c0001	t0001	g0001	SAS	STU	HOXD4_chr2_176146550_176158226	HOXD4
HG04204	hp1	a0001	c0001	t0001	g0002	SAS	STU	HOXD4_chr2_176146550_176158226	HOXD4
HG04204	hp2	a0001	c0001	t0001	g0001	SAS	STU	HOXD4_chr2_176146550_176158226	HOXD4
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	HOXD4_chr2_176146550_176158226	HOXD4
HG04228	hp2	a0002	c0002	t0002	g0002	SAS	STU	HOXD4_chr2_176146550_176158226	HOXD4
NA18522	hp1	a0002	c0002	t0001	g0001	AFR	YRI	HOXD4_chr2_176146550_176158226	HOXD4
NA18522	hp2	a0001	c0001	t0001	g0001	AFR	YRI	HOXD4_chr2_176146550_176158226	HOXD4
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	HOXD4_chr2_176146550_176158226	HOXD4
NA18612	hp2	a0001	c0001	t0001	g0001	EAS	CHB	HOXD4_chr2_176146550_176158226	HOXD4
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	HOXD4_chr2_176146550_176158226	HOXD4
NA18747	hp2	a0001	c0001	t0001	g0001	EAS	CHB	HOXD4_chr2_176146550_176158226	HOXD4
NA18939	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18943	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18946	hp1	a0002	c0002	t0002	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18946	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18947	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18948	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18952	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18956	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18956	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18959	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18960	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18962	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18964	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18966	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18968	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18968	hp2	a0002	c0002	t0002	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18969	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18970	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18971	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18974	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18979	hp1	a0001	c0001	t0004	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18980	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18981	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18981	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18982	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18983	hp1	a0001	c0001	t0001	g0006	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18983	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18986	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18991	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18991	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18992	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18992	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18993	hp1	a0001	c0001	t0001	g0002	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18993	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18994	hp2	a0001	c0001	t0001	g0002	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18995	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18998	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18998	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA18999	hp2	a0001	c0001	t0004	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19001	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19001	hp2	a0001	c0001	t0001	g0002	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19003	hp1	a0002	c0002	t0002	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19003	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19007	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19009	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19011	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19030	hp1	a0002	c0002	t0001	g0001	AFR	LWK	HOXD4_chr2_176146550_176158226	HOXD4
NA19030	hp2	a0002	c0002	t0001	g0001	AFR	LWK	HOXD4_chr2_176146550_176158226	HOXD4
NA19043	hp1	a0002	c0003	t0001	g0001	AFR	LWK	HOXD4_chr2_176146550_176158226	HOXD4
NA19043	hp2	a0002	c0002	t0001	g0001	AFR	LWK	HOXD4_chr2_176146550_176158226	HOXD4
NA19057	hp1	a0001	c0001	t0001	g0002	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19060	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19063	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19068	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19070	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19072	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19072	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19079	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19081	hp1	a0001	c0008	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19081	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19082	hp1	a0001	c0001	t0001	g0002	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19082	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19085	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19087	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19088	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19089	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19090	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19091	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HOXD4_chr2_176146550_176158226	HOXD4
NA19240	hp1	a0001	c0001	t0001	g0001	AFR	YRI	HOXD4_chr2_176146550_176158226	HOXD4
NA19240	hp2	a0002	c0003	t0001	g0001	AFR	YRI	HOXD4_chr2_176146550_176158226	HOXD4
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	HOXD4_chr2_176146550_176158226	HOXD4
NA20752	hp2	a0001	c0001	t0001	g0001	EUR	TSI	HOXD4_chr2_176146550_176158226	HOXD4
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	HOXD4_chr2_176146550_176158226	HOXD4
NA20805	hp2	a0001	c0001	t0001	g0001	EUR	TSI	HOXD4_chr2_176146550_176158226	HOXD4
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	HOXD4_chr2_176146550_176158226	HOXD4
NA20905	hp2	a0001	c0001	t0001	g0001	SAS	GIH	HOXD4_chr2_176146550_176158226	HOXD4
HG02109	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02109	hp2	a0001	c0001	t0001	g0003	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02559	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG02559	hp2	a0002	c0002	t0002	g0001	AFR	ACB	HOXD4_chr2_176146550_176158226	HOXD4
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
HG03471	hp2	a0001	c0001	t0001	g0001	AFR	MSL	HOXD4_chr2_176146550_176158226	HOXD4
NA21309	hp1	a0002	c0002	t0001	g0001	AFR	LWK	HOXD4_chr2_176146550_176158226	HOXD4
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	HOXD4_chr2_176146550_176158226	HOXD4
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	HOXD4_chr2_176146550_176158226	HOXD4
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	HOXD4_chr2_176146550_176158226	HOXD4

chr:pos	ref	alt	# # of ahapid:amio-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	chr	pos
chr2:176151697	G G	A A	1	a0006 a0006	1	HG03209.hp1 HG03209.hp1	missense_variant	MODERATE	c.64G>A c.64G>A	p.Glu22Lys p.Glu22Lys	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/2	148/1136	64/768	22/255	chr2	176151697
chr2:176151842	G G	A A	1	a0003 a0003	1	HG02896.hp2 HG02896.hp2	missense_variant	MODERATE	c.209G>A c.209G>A	p.Gly70Asp p.Gly70Asp	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/2	293/1136	209/768	70/255	chr2	176151842
chr2:176152000	T T	C C	2	a0002 a0006 a0002 a0006	72	HG00738.hp2 HG01069.hp2 HG01070.hp2 others(69): Show HG00738.hp2 HG01069.hp2 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp2 HG01106.hp2 HG01109.hp1 HG01167.hp2 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01192.hp2 HG01243.hp2 HG01255.hp2 HG01261.hp1 HG01358.hp1 HG01433.hp2 HG01496.hp1 HG01517.hp1 HG01975.hp1 HG01978.hp1 HG02074.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02451.hp2 HG02559.hp2 HG02572.hp2 HG02602.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp2 HG02717.hp1 HG02735.hp2 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG03017.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp2 HG03239.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03579.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp1 HG03831.hp1 HG04115.hp1 HG04228.hp2 NA18522.hp1 NA18946.hp1 NA18968.hp2 NA19003.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19240.hp2 NA21309.hp1	missense_variant	MODERATE	c.367T>C c.367T>C	p.Ser123Pro p.Ser123Pro	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/2	451/1136	367/768	123/255	chr2	176152000
chr2:176152658	A A	G G	1	a0004 a0004	1	HG02738.hp1 HG02738.hp1	missense_variant	MODERATE	c.484A>G c.484A>G	p.Thr162Ala p.Thr162Ala	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	2/2	568/1136	484/768	162/255	chr2	176152658
chr2:176152755	C C	T T	1	a0005 a0005	1	HG01168.hp2 HG01168.hp2	missense_variant	MODERATE	c.581C>T c.581C>T	p.Ser194Leu p.Ser194Leu	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	2/2	665/1136	581/768	194/255	chr2	176152755

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	chr	pos
chr2:176151768	C C	T T	1	a0002c0003 a0002c0003	5	HG02258.hp1 HG02922.hp2 HG03486.hp1 others(2): Show HG02258.hp1 HG02922.hp2 HG03486.hp1 NA19043.hp1 NA19240.hp2	synonymous_variant	LOW	c.135C>T c.135C>T	p.Asp45Asp p.Asp45Asp	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/2	219/1136	135/768	45/255	chr2	176151768
chr2:176152687	A A	G G	1	a0001c0008 a0001c0008	1	NA19081.hp1 NA19081.hp1	synonymous_variant	LOW	c.513A>G c.513A>G	p.Lys171Lys p.Lys171Lys	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	2/2	597/1136	513/768	171/255	chr2	176152687
chr2:176152705	G G	A A	1	a0002c0006 a0002c0006	1	HG02257.hp2 HG02257.hp2	synonymous_variant	LOW	c.531G>A c.531G>A	p.Arg177Arg p.Arg177Arg	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	2/2	615/1136	531/768	177/255	chr2	176152705

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr2:176153006	C C	A A	1	a0001c0001t0004 a0001c0001t0004	3	NA18956.hp1 NA18979.hp1 NA18999.hp2 NA18956.hp1 NA18979.hp1 NA18999.hp2	3_prime_UTR_variant	MODIFIER	c.64C>A c.64C>A	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	2/2	64	chr2	176153006
chr2:176153120	C C	T T	2	a0002c0002t0002 a0002c0002t0003 a0002c0002t0002 a0002c0002t0003	39	HG00738.hp2 HG01069.hp2 HG01070.hp2 others(36): Show HG00738.hp2 HG01069.hp2 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp2 HG01106.hp2 HG01109.hp1 HG01167.hp2 HG01169.hp1 HG01192.hp2 HG01243.hp2 HG01255.hp2 HG01261.hp1 HG01358.hp1 HG01433.hp2 HG01496.hp1 HG01517.hp1 HG01975.hp1 HG01978.hp1 HG02074.hp1 HG02165.hp2 HG02258.hp2 HG02559.hp2 HG02572.hp2 HG02602.hp1 HG02895.hp1 HG03225.hp2 HG03239.hp1 HG03490.hp1 HG03492.hp1 HG03654.hp1 HG03669.hp2 HG03704.hp1 HG03831.hp1 HG04228.hp2 NA18946.hp1 NA18968.hp2 NA19003.hp1	3_prime_UTR_variant	MODIFIER	c.178C>T c.178C>T	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	2/2	178	chr2	176153120
chr2:176153137	G G	C C	1	a0001c0001t0005 a0001c0001t0005	1	HG02055.hp2 HG02055.hp2	3_prime_UTR_variant	MODIFIER	c.195G>C c.195G>C	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	2/2	195	chr2	176153137
chr2:176153143	C C	T T	1	a0002c0002t0003 a0002c0002t0003	17	HG00738.hp2 HG01070.hp2 HG01071.hp2 others(14): Show HG00738.hp2 HG01070.hp2 HG01071.hp2 HG01109.hp1 HG01192.hp2 HG01243.hp2 HG01255.hp2 HG01261.hp1 HG01358.hp1 HG01433.hp2 HG01517.hp1 HG01975.hp1 HG01978.hp1 HG03239.hp1 HG03490.hp1 HG03492.hp1 HG03669.hp2	3_prime_UTR_variant	MODIFIER	c.201C>T c.201C>T	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	2/2	201	chr2	176153143

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr2:176152072	G G	T T	1	a0002c0002t0002g0009 a0002c0002t0002g0009	1	HG03225.hp2 HG03225.hp2	splice_region_variant&intron_variant	LOW	c.433+6G>T c.433+6G>T	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/1		chr2	176152072
chr2:176152166	A A	C C	1	a0001c0001t0001g0008 a0001c0001t0001g0008	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.433+100A>C c.433+100A>C	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/1		chr2	176152166
chr2:176152202	A A	T T	1	a0001c0001t0001g0007 a0001c0001t0001g0007	1	HG01928.hp1 HG01928.hp1	intron_variant	MODIFIER	c.433+136A>T c.433+136A>T	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/1		chr2	176152202
chr2:176152267	ATGGGGGG others(7): Show ATGGGGGGGTGGGGG	A A	1	a0002c0002t0001g0005 a0002c0002t0001g0005	1	HG02451.hp2 HG02451.hp2	intron_variant	MODIFIER	c.433+202_433+215del others(14): Show c.433+202_433+215delTGGGGGGGTGGGGG	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/1		chr2	176152267
chr2:176152268	T T	TG TG	5	a0001c0001t0001g0002 a0002c0002t0002g0002 a0002c0002t0003g0002 others(2): Show a0001c0001t0001g0002 a0002c0002t0002g0002 a0002c0002t0003g0002 a0002c0003t0001g0002 a0004c0009t0001g0002	14	HG01243.hp2 HG01261.hp1 HG01433.hp1 others(11): Show HG01243.hp2 HG01261.hp1 HG01433.hp1 HG01928.hp2 HG02258.hp1 HG02602.hp1 HG02738.hp1 HG04204.hp1 HG04228.hp2 NA18993.hp1 NA18994.hp2 NA19001.hp2 NA19057.hp1 NA19082.hp1	intron_variant	MODIFIER	c.433+209dupG c.433+209dupG	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr2	176152268
chr2:176152271	G G	C C	1	a0001c0001t0001g0003 a0001c0001t0001g0003	4	HG02109.hp2 HG02615.hp2 HG03130.hp2 others(1): Show HG02109.hp2 HG02615.hp2 HG03130.hp2 HG03486.hp2	intron_variant	MODIFIER	c.433+205G>C c.433+205G>C	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/1		chr2	176152271
chr2:176152327	G G	C C	1	a0002c0002t0002g0004 a0002c0002t0002g0004	2	HG02074.hp1 HG02165.hp2 HG02074.hp1 HG02165.hp2	intron_variant	MODIFIER	c.433+261G>C c.433+261G>C	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/1		chr2	176152327
chr2:176152480	A A	G G	1	a0001c0001t0001g0006 a0001c0001t0001g0006	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.434-128A>G c.434-128A>G	HOXD4	ENSG00000170166.6	transcript	ENST00000306324.4	protein_coding	1/1		chr2	176152480

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🧬 JoGo Online Haplotype Explorer HOXD4_chr2_176146550_176158226

JoGo Local Haplotype Explorer (on iGV) HOXD4_chr2_176146550_176158226

🧬 Gene Summary

Translation Multiple Alignment View

LD View

AAmino acid (protein) Level Haplotype Info (Total: 6)

CCoding Level Haplotype Info (Total: 9)

TTranscript Level Haplotype Info (Total: 5)

GGenebody Level Haplotype Info (Total: 9)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 9)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 13)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 24)

Haplotype Details by Sample (Haploid Level) (Total: 352)

AAmino acid (protein) Level Variants (Effect to Protein Coding Variants) (Total: 5)

CCoding Level Variants (Synonymous Mutations) (Total: 3)

TTranscript Level Variants (5'UTR+3'UTR) (Total: 4)

GGenebody Level Haplotype Variants (Intron) (Total: 8)

Genealogies

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Annotation (Repeats)

Annotation (SNP Array)