Joint Open Genome and Omics Platform (JoGo)

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geneid	353141
ensemblid	ENSG00000187223.4
hgncid	16518
symbol	LCE2D
name	late cornified envelope 2D
refseq_nuc	NM_178430.4
refseq_prot	NP_848517.1
ensembl_nuc	ENST00000368784.2
ensembl_prot	ENSP00000357773.1
mane_status	MANE Select
chr	chr1
start	152663380
end	152664659
strand	+
ver	v1.2
region	chr1:152663380-152664659
region5000	chr1:152658380-152669659
regionname0	LCE2D_chr1_152663380_152664659
regionname5000	LCE2D_chr1_152658380_152669659

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aa
a0001	1/1	110	339	90	58	139	12	38	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0002	0/0	110	30	2	11	9	6	2	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0003	0/0	110	3	3	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0004	0/0	110	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0005	0/0	110	1	0	1	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq
c0001	1/1	333	323	74	58	139	12	38	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
c0002	0/0	333	30	2	11	9	6	2	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
c0003	0/0	333	16	16	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
c0004	0/0	333	3	3	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
c0005	0/0	333	1	0	1	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
c0006	0/0	333	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta

thapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq
t0001	1/1	293	349	73	70	148	17	39	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
t0002	0/0	296	20	20	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
t0003	0/0	293	2	2	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
t0004	0/0	293	1	0	0	0	1	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
t0005	0/0	293	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
t0006	0/0	293	1	0	0	0	0	1	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
g0001	1/1	309	67	65	122	18	35	LCE2D_chr1_152658380_152669659	LCE2D
g0002	0/0	31	1	4	21	0	5	LCE2D_chr1_152658380_152669659	LCE2D
g0003	0/0	19	19	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
g0004	0/0	4	4	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
g0005	0/0	4	0	0	4	0	0	LCE2D_chr1_152658380_152669659	LCE2D
g0006	0/0	3	3	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
g0007	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
g0008	0/0	1	0	1	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
g0009	0/0	1	0	0	1	0	0	LCE2D_chr1_152658380_152669659	LCE2D
g0010	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D

achapid	ahapid	chapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	acseq
a0001c0001	a0001	c0001	1/1	323	74	58	139	12	38	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0001c0003	a0001	c0003	0/0	16	16	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0002c0002	a0002	c0002	0/0	30	2	11	9	6	2	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0003c0004	a0003	c0004	0/0	3	3	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0004c0006	a0004	c0006	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0005c0005	a0005	c0005	0/0	1	0	1	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta

acthapid	ahapid	chapid	thapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	actseq
a0001c0001t0001	a0001	c0001	t0001	1/1	317	70	58	139	11	37	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0001c0001t0002	a0001	c0001	t0002	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0001c0001t0003	a0001	c0001	t0003	0/0	2	2	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0001c0001t0004	a0001	c0001	t0004	0/0	1	0	0	0	1	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0001c0001t0005	a0001	c0001	t0005	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0001c0001t0006	a0001	c0001	t0006	0/0	1	0	0	0	0	1	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0001c0003t0002	a0001	c0003	t0002	0/0	16	16	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0002c0002t0001	a0002	c0002	t0001	0/0	30	2	11	9	6	2	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0003c0004t0002	a0003	c0004	t0002	0/0	3	3	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0004c0006t0001	a0004	c0006	t0001	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta
a0005c0005t0001	a0005	c0005	t0001	0/0	1	0	1	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D	copy fasta

actghapid	ahapid	chapid	thapid	ghapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
a0001c0001t0001g0001	a0001	c0001	t0001	g0001	1/1	273	61	54	113	11	32	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0001g0002	a0001	c0001	t0001	g0002	0/0	30	1	3	21	0	5	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0001g0004	a0001	c0001	t0001	g0004	0/0	4	4	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0001g0005	a0001	c0001	t0001	g0005	0/0	4	0	0	4	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0001g0006	a0001	c0001	t0001	g0006	0/0	3	3	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0001g0008	a0001	c0001	t0001	g0008	0/0	1	0	1	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0001g0009	a0001	c0001	t0001	g0009	0/0	1	0	0	1	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0001g0010	a0001	c0001	t0001	g0010	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0002g0003	a0001	c0001	t0002	g0003	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0003g0001	a0001	c0001	t0003	g0001	0/0	2	2	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0004g0001	a0001	c0001	t0004	g0001	0/0	1	0	0	0	1	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0005g0001	a0001	c0001	t0005	g0001	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0001t0006g0001	a0001	c0001	t0006	g0001	0/0	1	0	0	0	0	1	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0003t0002g0003	a0001	c0003	t0002	g0003	0/0	15	15	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0001c0003t0002g0007	a0001	c0003	t0002	g0007	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0002c0002t0001g0001	a0002	c0002	t0001	g0001	0/0	30	2	11	9	6	2	LCE2D_chr1_152658380_152669659	LCE2D
a0003c0004t0002g0003	a0003	c0004	t0002	g0003	0/0	3	3	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0004c0006t0001g0001	a0004	c0006	t0001	g0001	0/0	1	1	0	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D
a0005c0005t0001g0002	a0005	c0005	t0001	g0002	0/0	1	0	1	0	0	0	LCE2D_chr1_152658380_152669659	LCE2D

sampleid	haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	LCE2D_chr1_152658380_152669659	LCE2D
HG00099	hp2	a0002	c0002	t0001	g0001	EUR	GBR	LCE2D_chr1_152658380_152669659	LCE2D
HG00140	hp1	a0002	c0002	t0001	g0001	EUR	GBR	LCE2D_chr1_152658380_152669659	LCE2D
HG00140	hp2	a0001	c0001	t0001	g0001	EUR	GBR	LCE2D_chr1_152658380_152669659	LCE2D
HG00280	hp1	a0002	c0002	t0001	g0001	EUR	FIN	LCE2D_chr1_152658380_152669659	LCE2D
HG00280	hp2	a0001	c0001	t0001	g0001	EUR	FIN	LCE2D_chr1_152658380_152669659	LCE2D
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	LCE2D_chr1_152658380_152669659	LCE2D
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	LCE2D_chr1_152658380_152669659	LCE2D
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00423	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00558	hp1	a0002	c0002	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00609	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00621	hp2	a0001	c0001	t0001	g0009	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG00639	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG00642	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00673	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE2D_chr1_152658380_152669659	LCE2D
HG00733	hp1	a0002	c0002	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG00733	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG00735	hp1	a0005	c0005	t0001	g0002	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG00741	hp2	a0002	c0002	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01069	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01070	hp2	a0001	c0001	t0001	g0002	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01071	hp1	a0001	c0001	t0001	g0002	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01074	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01099	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01106	hp2	a0002	c0002	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01167	hp1	a0002	c0002	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01167	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01168	hp2	a0002	c0002	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01169	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01175	hp1	a0002	c0002	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01192	hp2	a0001	c0001	t0001	g0002	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01243	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE2D_chr1_152658380_152669659	LCE2D
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01255	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01261	hp1	a0001	c0001	t0001	g0008	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01261	hp2	a0002	c0002	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01433	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01515	hp1	a0001	c0001	t0004	g0001	EUR	IBS	LCE2D_chr1_152658380_152669659	LCE2D
HG01515	hp2	a0002	c0002	t0001	g0001	EUR	IBS	LCE2D_chr1_152658380_152669659	LCE2D
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	LCE2D_chr1_152658380_152669659	LCE2D
HG01516	hp2	a0001	c0001	t0001	g0001	EUR	IBS	LCE2D_chr1_152658380_152669659	LCE2D
HG01517	hp1	a0002	c0002	t0001	g0001	EUR	IBS	LCE2D_chr1_152658380_152669659	LCE2D
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	LCE2D_chr1_152658380_152669659	LCE2D
HG01884	hp1	a0001	c0001	t0001	g0004	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG01884	hp2	a0002	c0002	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG01891	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG01891	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01928	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01934	hp1	a0002	c0002	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01934	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01952	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01975	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG02004	hp1	a0002	c0002	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG02004	hp2	a0002	c0002	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG02015	hp1	a0002	c0002	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02015	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02027	hp2	a0001	c0001	t0001	g0002	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02040	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02055	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02056	hp1	a0001	c0001	t0001	g0002	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02056	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02071	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02074	hp2	a0001	c0001	t0001	g0002	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02083	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02129	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02132	hp1	a0001	c0001	t0001	g0002	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02132	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02135	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02145	hp2	a0001	c0001	t0001	g0004	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG02155	hp1	a0001	c0001	t0001	g0001	EAS	CDX	LCE2D_chr1_152658380_152669659	LCE2D
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	LCE2D_chr1_152658380_152669659	LCE2D
HG02165	hp1	a0001	c0001	t0001	g0002	EAS	CDX	LCE2D_chr1_152658380_152669659	LCE2D
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	LCE2D_chr1_152658380_152669659	LCE2D
HG02257	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02257	hp2	a0001	c0003	t0002	g0003	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02258	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02280	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02280	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG02300	hp1	a0002	c0002	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG02300	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE2D_chr1_152658380_152669659	LCE2D
HG02451	hp1	a0001	c0003	t0002	g0003	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02523	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE2D_chr1_152658380_152669659	LCE2D
HG02572	hp1	a0001	c0001	t0001	g0006	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02572	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG02602	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG02615	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02622	hp1	a0001	c0003	t0002	g0003	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02630	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02630	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02647	hp2	a0001	c0003	t0002	g0003	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG02698	hp2	a0002	c0002	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02717	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02723	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02723	hp2	a0001	c0001	t0003	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02735	hp1	a0001	c0001	t0006	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG02735	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG02738	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG02809	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02809	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02818	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02818	hp2	a0001	c0001	t0001	g0002	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02886	hp1	a0001	c0003	t0002	g0003	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02886	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02895	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02896	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02896	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02897	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02897	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG02922	hp1	a0001	c0001	t0002	g0003	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG02922	hp2	a0001	c0003	t0002	g0003	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG02965	hp1	a0001	c0003	t0002	g0003	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG02965	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG02970	hp1	a0001	c0001	t0001	g0010	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG02970	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG02976	hp1	a0001	c0001	t0001	g0004	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG02976	hp2	a0001	c0003	t0002	g0003	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03017	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03041	hp1	a0001	c0001	t0001	g0006	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG03041	hp2	a0001	c0003	t0002	g0007	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03098	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG03130	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG03195	hp1	a0003	c0004	t0002	g0003	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG03195	hp2	a0001	c0003	t0002	g0003	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03209	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03225	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03239	hp2	a0001	c0001	t0001	g0002	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03453	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03453	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03486	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03492	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03516	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG03516	hp2	a0003	c0004	t0002	g0003	AFR	ESN	LCE2D_chr1_152658380_152669659	LCE2D
HG03540	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG03540	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE2D_chr1_152658380_152669659	LCE2D
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03579	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03654	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	LCE2D_chr1_152658380_152669659	LCE2D
HG03688	hp2	a0001	c0001	t0001	g0001	SAS	STU	LCE2D_chr1_152658380_152669659	LCE2D
HG03704	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03704	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03710	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE2D_chr1_152658380_152669659	LCE2D
HG03831	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LCE2D_chr1_152658380_152669659	LCE2D
HG03831	hp2	a0001	c0001	t0001	g0002	SAS	BEB	LCE2D_chr1_152658380_152669659	LCE2D
HG03834	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LCE2D_chr1_152658380_152669659	LCE2D
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LCE2D_chr1_152658380_152669659	LCE2D
HG03927	hp1	a0001	c0001	t0001	g0002	SAS	BEB	LCE2D_chr1_152658380_152669659	LCE2D
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LCE2D_chr1_152658380_152669659	LCE2D
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	LCE2D_chr1_152658380_152669659	LCE2D
HG04115	hp2	a0001	c0001	t0001	g0001	SAS	STU	LCE2D_chr1_152658380_152669659	LCE2D
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LCE2D_chr1_152658380_152669659	LCE2D
HG04184	hp2	a0001	c0001	t0001	g0002	SAS	BEB	LCE2D_chr1_152658380_152669659	LCE2D
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	LCE2D_chr1_152658380_152669659	LCE2D
HG04228	hp2	a0001	c0001	t0001	g0002	SAS	STU	LCE2D_chr1_152658380_152669659	LCE2D
NA18522	hp1	a0001	c0003	t0002	g0003	AFR	YRI	LCE2D_chr1_152658380_152669659	LCE2D
NA18522	hp2	a0001	c0003	t0002	g0003	AFR	YRI	LCE2D_chr1_152658380_152669659	LCE2D
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	LCE2D_chr1_152658380_152669659	LCE2D
NA18612	hp2	a0001	c0001	t0001	g0001	EAS	CHB	LCE2D_chr1_152658380_152669659	LCE2D
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	LCE2D_chr1_152658380_152669659	LCE2D
NA18747	hp2	a0001	c0001	t0001	g0001	EAS	CHB	LCE2D_chr1_152658380_152669659	LCE2D
NA18906	hp1	a0001	c0001	t0001	g0001	AFR	YRI	LCE2D_chr1_152658380_152669659	LCE2D
NA18906	hp2	a0001	c0001	t0001	g0006	AFR	YRI	LCE2D_chr1_152658380_152669659	LCE2D
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18940	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18946	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18946	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18954	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18954	hp2	a0002	c0002	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18956	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18956	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18957	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18959	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18960	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18963	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18963	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18966	hp1	a0002	c0002	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18966	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18967	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18968	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18970	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18971	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18974	hp1	a0002	c0002	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18974	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18975	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18975	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18978	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18978	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18979	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18979	hp2	a0001	c0001	t0001	g0005	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18981	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18981	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18982	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18986	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18989	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18989	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18991	hp1	a0002	c0002	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18991	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18993	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18993	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18994	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18994	hp2	a0002	c0002	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18995	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18998	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18998	hp2	a0002	c0002	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18999	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19000	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19001	hp1	a0001	c0001	t0001	g0005	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19001	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19007	hp1	a0001	c0001	t0001	g0005	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19007	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19009	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19009	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19011	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19012	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19030	hp1	a0001	c0003	t0002	g0003	AFR	LWK	LCE2D_chr1_152658380_152669659	LCE2D
NA19030	hp2	a0001	c0003	t0002	g0003	AFR	LWK	LCE2D_chr1_152658380_152669659	LCE2D
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19058	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19060	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19060	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19062	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19062	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19063	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19066	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19067	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19068	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19068	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19070	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19072	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19072	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19078	hp1	a0002	c0002	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19078	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19079	hp1	a0001	c0001	t0001	g0005	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19079	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19080	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19080	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19087	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19090	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA19240	hp1	a0001	c0001	t0001	g0001	AFR	YRI	LCE2D_chr1_152658380_152669659	LCE2D
NA19240	hp2	a0003	c0004	t0002	g0003	AFR	YRI	LCE2D_chr1_152658380_152669659	LCE2D
NA20129	hp1	a0001	c0001	t0001	g0001	AFR	ASW	LCE2D_chr1_152658380_152669659	LCE2D
NA20129	hp2	a0001	c0001	t0001	g0001	AFR	ASW	LCE2D_chr1_152658380_152669659	LCE2D
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	LCE2D_chr1_152658380_152669659	LCE2D
NA20752	hp2	a0001	c0001	t0001	g0001	EUR	TSI	LCE2D_chr1_152658380_152669659	LCE2D
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	LCE2D_chr1_152658380_152669659	LCE2D
NA20805	hp2	a0002	c0002	t0001	g0001	EUR	TSI	LCE2D_chr1_152658380_152669659	LCE2D
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	LCE2D_chr1_152658380_152669659	LCE2D
NA20905	hp2	a0002	c0002	t0001	g0001	SAS	GIH	LCE2D_chr1_152658380_152669659	LCE2D
HG01123	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE2D_chr1_152658380_152669659	LCE2D
HG02109	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02109	hp2	a0001	c0001	t0005	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02486	hp2	a0001	c0001	t0001	g0004	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02559	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG02559	hp2	a0002	c0002	t0001	g0001	AFR	ACB	LCE2D_chr1_152658380_152669659	LCE2D
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG03471	hp2	a0004	c0006	t0001	g0001	AFR	MSL	LCE2D_chr1_152658380_152669659	LCE2D
HG06807	hp1	a0001	c0001	t0001	g0001	AFR	USA	LCE2D_chr1_152658380_152669659	LCE2D
HG06807	hp2	a0001	c0001	t0003	g0001	AFR	USA	LCE2D_chr1_152658380_152669659	LCE2D
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA18955	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE2D_chr1_152658380_152669659	LCE2D
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	LCE2D_chr1_152658380_152669659	LCE2D
NA20300	hp2	a0001	c0003	t0002	g0003	AFR	USA	LCE2D_chr1_152658380_152669659	LCE2D
NA21309	hp1	a0001	c0003	t0002	g0003	AFR	LWK	LCE2D_chr1_152658380_152669659	LCE2D
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	LCE2D_chr1_152658380_152669659	LCE2D
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	LCE2D_chr1_152658380_152669659	LCE2D
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	LCE2D_chr1_152658380_152669659	LCE2D

chr:pos	ref	alt	# # of ahapid:amio-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	chr	pos
chr1:152664320	G G	C C	1	a0005 a0005	1	HG00735.hp1 HG00735.hp1	missense_variant	MODERATE	c.215G>C c.215G>C	p.Cys72Ser p.Cys72Ser	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	286/625	215/333	72/110	chr1	152664320
chr1:152664340	C C	T T	1	a0004 a0004	1	HG03471.hp2 HG03471.hp2	missense_variant	MODERATE	c.235C>T c.235C>T	p.Arg79Cys p.Arg79Cys	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	306/625	235/333	79/110	chr1	152664340
chr1:152664367	A A	T T	1	a0002 a0002	30	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(27): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00558.hp1 HG00733.hp1 HG00741.hp2 HG01106.hp2 HG01167.hp1 HG01168.hp2 HG01175.hp1 HG01261.hp2 HG01515.hp2 HG01517.hp1 HG01884.hp2 HG01934.hp1 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02300.hp1 HG02559.hp2 HG02698.hp2 NA18954.hp2 NA18966.hp1 NA18974.hp1 NA18991.hp1 NA18994.hp2 NA18998.hp2 NA19078.hp1 NA20805.hp2 NA20905.hp2	missense_variant	MODERATE	c.262A>T c.262A>T	p.Ser88Cys p.Ser88Cys	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	333/625	262/333	88/110	chr1	152664367
chr1:152664380	G G	A A	1	a0003 a0003	3	HG03195.hp1 HG03516.hp2 NA19240.hp2 HG03195.hp1 HG03516.hp2 NA19240.hp2	missense_variant	MODERATE	c.275G>A c.275G>A	p.Cys92Tyr p.Cys92Tyr	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	346/625	275/333	92/110	chr1	152664380

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	distance	status	chr	pos
chr1:152664195	C C	T T	2	a0001c0003 a0003c0004 a0001c0003 a0003c0004	19	HG02257.hp2 HG02451.hp1 HG02622.hp1 others(16): Show HG02257.hp2 HG02451.hp1 HG02622.hp1 HG02647.hp2 HG02886.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03041.hp2 HG03195.hp1 HG03195.hp2 HG03516.hp2 NA18522.hp1 NA18522.hp2 NA19030.hp1 NA19030.hp2 NA19240.hp2 NA20300.hp2 NA21309.hp1	synonymous_variant	LOW	c.90C>T c.90C>T	p.Pro30Pro p.Pro30Pro	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	161/625	90/333	30/110			chr1	152664195

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chr1:152664524	A A	T T	1	a0001c0001t0006 a0001c0001t0006	1	HG02735.hp1 HG02735.hp1	3_prime_UTR_variant	MODIFIER	c.86A>T c.86A>T	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	86		chr1	152664524
chr1:152664534	G G	T T	1	a0001c0001t0005 a0001c0001t0005	1	HG02109.hp2 HG02109.hp2	3_prime_UTR_variant	MODIFIER	c.96G>T c.96G>T	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	96		chr1	152664534
chr1:152664536	A A	G G	1	a0001c0001t0005 a0001c0001t0005	1	HG02109.hp2 HG02109.hp2	3_prime_UTR_variant	MODIFIER	c.98A>G c.98A>G	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	98		chr1	152664536
chr1:152664567	C C	CAGA CAGA	3	a0001c0001t0002 a0001c0003t0002 a0003c0004t0002 a0001c0001t0002 a0001c0003t0002 a0003c0004t0002	20	HG02257.hp2 HG02451.hp1 HG02622.hp1 others(17): Show HG02257.hp2 HG02451.hp1 HG02622.hp1 HG02647.hp2 HG02886.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03041.hp2 HG03195.hp1 HG03195.hp2 HG03516.hp2 NA18522.hp1 NA18522.hp2 NA19030.hp1 NA19030.hp2 NA19240.hp2 NA20300.hp2 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.131_133dupGAA c.131_133dupGAA	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	134	INFO_REALIGN_3_PRIME	chr1	152664567
chr1:152664603	G G	A A	1	a0001c0001t0004 a0001c0001t0004	1	HG01515.hp1 HG01515.hp1	3_prime_UTR_variant	MODIFIER	c.165G>A c.165G>A	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	165		chr1	152664603
chr1:152664650	T T	G G	1	a0001c0001t0003 a0001c0001t0003	2	HG02723.hp2 HG06807.hp2 HG02723.hp2 HG06807.hp2	3_prime_UTR_variant	MODIFIER	c.212T>G c.212T>G	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	2/2	212		chr1	152664650

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr1:152663435	T T	C C	4	a0001c0001t0002g0003 a0001c0003t0002g0003 a0001c0003t0002g0007 others(1): Show a0001c0001t0002g0003 a0001c0003t0002g0003 a0001c0003t0002g0007 a0003c0004t0002g0003	20	HG02257.hp2 HG02451.hp1 HG02622.hp1 others(17): Show HG02257.hp2 HG02451.hp1 HG02622.hp1 HG02647.hp2 HG02886.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03041.hp2 HG03195.hp1 HG03195.hp2 HG03516.hp2 NA18522.hp1 NA18522.hp2 NA19030.hp1 NA19030.hp2 NA19240.hp2 NA20300.hp2 NA21309.hp1	splice_region_variant&intron_variant	LOW	c.-22+6T>C c.-22+6T>C	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	1/1	chr1	152663435
chr1:152663460	A A	T T	1	a0001c0001t0001g0006 a0001c0001t0001g0006	3	HG02572.hp1 HG03041.hp1 NA18906.hp2 HG02572.hp1 HG03041.hp1 NA18906.hp2	intron_variant	MODIFIER	c.-22+31A>T c.-22+31A>T	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	1/1	chr1	152663460
chr1:152663494	A A	G G	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG02970.hp1 HG02970.hp1	intron_variant	MODIFIER	c.-22+65A>G c.-22+65A>G	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	1/1	chr1	152663494
chr1:152663499	G G	A A	1	a0001c0001t0001g0008 a0001c0001t0001g0008	1	HG01261.hp1 HG01261.hp1	intron_variant	MODIFIER	c.-22+70G>A c.-22+70G>A	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	1/1	chr1	152663499
chr1:152663617	C C	T T	4	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0009 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0009 a0005c0005t0001g0002	36	HG00621.hp2 HG00735.hp1 HG01070.hp2 others(33): Show HG00621.hp2 HG00735.hp1 HG01070.hp2 HG01071.hp1 HG01192.hp2 HG02027.hp2 HG02056.hp1 HG02074.hp2 HG02132.hp1 HG02165.hp1 HG02818.hp2 HG03239.hp2 HG03831.hp2 HG03927.hp1 HG04184.hp2 HG04228.hp2 NA18940.hp2 NA18955.hp2 NA18956.hp1 NA18960.hp2 NA18966.hp2 NA18979.hp2 NA18981.hp1 NA18989.hp1 NA18994.hp1 NA18995.hp2 NA19000.hp2 NA19001.hp1 NA19007.hp1 NA19009.hp1 NA19060.hp1 NA19062.hp1 NA19068.hp1 NA19070.hp2 NA19072.hp1 NA19079.hp1	intron_variant	MODIFIER	c.-22+188C>T c.-22+188C>T	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	1/1	chr1	152663617
chr1:152663698	A A	G G	1	a0001c0001t0001g0004 a0001c0001t0001g0004	4	HG01884.hp1 HG02145.hp2 HG02486.hp2 others(1): Show HG01884.hp1 HG02145.hp2 HG02486.hp2 HG02976.hp1	intron_variant	MODIFIER	c.-22+269A>G c.-22+269A>G	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	1/1	chr1	152663698
chr1:152663724	G G	A A	1	a0001c0001t0001g0009 a0001c0001t0001g0009	1	HG00621.hp2 HG00621.hp2	intron_variant	MODIFIER	c.-22+295G>A c.-22+295G>A	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	1/1	chr1	152663724
chr1:152663734	T T	C C	1	a0001c0001t0001g0004 a0001c0001t0001g0004	4	HG01884.hp1 HG02145.hp2 HG02486.hp2 others(1): Show HG01884.hp1 HG02145.hp2 HG02486.hp2 HG02976.hp1	intron_variant	MODIFIER	c.-22+305T>C c.-22+305T>C	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	1/1	chr1	152663734
chr1:152663786	C C	T T	1	a0001c0003t0002g0007 a0001c0003t0002g0007	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-21-299C>T c.-21-299C>T	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	1/1	chr1	152663786
chr1:152663855	T T	G G	1	a0001c0001t0001g0005 a0001c0001t0001g0005	4	NA18979.hp2 NA19001.hp1 NA19007.hp1 others(1): Show NA18979.hp2 NA19001.hp1 NA19007.hp1 NA19079.hp1	intron_variant	MODIFIER	c.-21-230T>G c.-21-230T>G	LCE2D	ENSG00000187223.4	transcript	ENST00000368784.2	protein_coding	1/1	chr1	152663855

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🧬 JoGo Online Haplotype Explorer LCE2D_chr1_152658380_152669659

JoGo Local Haplotype Explorer (on iGV) LCE2D_chr1_152658380_152669659

🧬 Gene Summary

Translation Multiple Alignment View

LD View

AAmino acid (protein) Level Haplotype Info (Total: 5)

CCoding Level Haplotype Info (Total: 6)

TTranscript Level Haplotype Info (Total: 6)

GGenebody Level Haplotype Info (Total: 10)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 6)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 11)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 19)

Haplotype Details by Sample (Haploid Level) (Total: 374)

AAmino acid (protein) Level Variants (Effect to Protein Coding Variants) (Total: 4)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Variants (5'UTR+3'UTR) (Total: 6)

GGenebody Level Haplotype Variants (Intron) (Total: 10)

Genealogies

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Annotation (Repeats)

Annotation (SNP Array)