Search by Gene
| geneid | 96626 |
|---|---|
| ensemblid | ENSG00000256977.13 |
| hgncid | 30047 |
| symbol | LIMS3 |
| name | LIM zinc finger domain containing 3 |
| refseq_nuc | NM_001394901.1 |
| refseq_prot | NP_001381830.1 |
| ensembl_nuc | ENST00000480744.3 |
| ensembl_prot | ENSP00000488486.1 |
| mane_status | MANE Select |
| chr | chr2 |
| start | 109898688 |
| end | 109925625 |
| strand | + |
| ver | v1.2 |
| region | chr2:109898688-109925625 |
| region5000 | chr2:109893688-109930625 |
| regionname0 | LIMS3_chr2_109898688_109925625 |
| regionname5000 | LIMS3_chr2_109893688_109930625 |
Multiple Alignments (by translate haplotype frequency)
Multiple Alignments (by aa haplotype similarity)
Multiple Alignments (by aa haplotype frequency)
| ahapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
alen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | aa |
|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001 | 0/0 | 398 | 16 | 15 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| a0002 | 0/0 | 398 | 4 | 3 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| a0003 | 0/0 | 398 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| a0004 | 0/0 | 398 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| chapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | cseq |
|---|---|---|---|---|---|---|---|---|---|---|---|
| c0001 | 0/0 | 1197 | 16 | 15 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| c0002 | 0/0 | 1197 | 4 | 3 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| c0003 | 0/0 | 1197 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| c0004 | 0/0 | 1197 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| thapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq |
|---|---|---|---|---|---|---|---|---|---|---|---|
| t0001 | 0/0 | 898 | 17 | 16 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| t0002 | 0/0 | 899 | 3 | 2 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| t0003 | 0/0 | 898 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| t0004 | 0/0 | 898 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| ghapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
total | AFR | AMR | EAS | EUR | SAS | regionname | genename |
|---|---|---|---|---|---|---|---|---|---|
| g0001 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0002 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0003 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0004 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0005 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0006 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0007 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0008 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0009 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0010 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0011 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0012 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0013 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0014 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0015 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0016 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0017 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0018 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0019 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| g0020 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| achapid | ahapid | chapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
total | AFR | AMR | EAS | EUR | SAS | regionname | genename | acseq |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001 | a0001 | c0001 | 0/0 | 16 | 15 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| a0002c0002 | a0002 | c0002 | 0/0 | 4 | 3 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| a0003c0003 | a0003 | c0003 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| a0004c0004 | a0004 | c0004 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| acthapid | ahapid | chapid | thapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
total | AFR | AMR | EAS | EUR | SAS | regionname | genename | actseq |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001 | a0001 | c0001 | t0001 | 0/0 | 16 | 15 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| a0002c0002t0002 | a0002 | c0002 | t0002 | 0/0 | 3 | 2 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| a0002c0002t0004 | a0002 | c0002 | t0004 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| a0003c0003t0003 | a0003 | c0003 | t0003 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| a0004c0004t0001 | a0004 | c0004 | t0001 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 | copy fasta |
| actghapid | ahapid | chapid | thapid | ghapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
total | AFR | AMR | EAS | EUR | SAS | regionname | genename |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001g0001 | a0001 | c0001 | t0001 | g0001 | 0/0 | 2 | 2 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0002 | a0001 | c0001 | t0001 | g0002 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0004 | a0001 | c0001 | t0001 | g0004 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0005 | a0001 | c0001 | t0001 | g0005 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0006 | a0001 | c0001 | t0001 | g0006 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0007 | a0001 | c0001 | t0001 | g0007 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0008 | a0001 | c0001 | t0001 | g0008 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0009 | a0001 | c0001 | t0001 | g0009 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0010 | a0001 | c0001 | t0001 | g0010 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0011 | a0001 | c0001 | t0001 | g0011 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0012 | a0001 | c0001 | t0001 | g0012 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0013 | a0001 | c0001 | t0001 | g0013 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0014 | a0001 | c0001 | t0001 | g0014 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0015 | a0001 | c0001 | t0001 | g0015 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0001c0001t0001g0016 | a0001 | c0001 | t0001 | g0016 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0002c0002t0002g0017 | a0002 | c0002 | t0002 | g0017 | 0/0 | 1 | 0 | 1 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0002c0002t0002g0018 | a0002 | c0002 | t0002 | g0018 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0002c0002t0002g0020 | a0002 | c0002 | t0002 | g0020 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0002c0002t0004g0019 | a0002 | c0002 | t0004 | g0019 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0003c0003t0003g0003 | a0003 | c0003 | t0003 | g0003 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| a0004c0004t0001g0002 | a0004 | c0004 | t0001 | g0002 | 0/0 | 1 | 1 | 0 | 0 | 0 | 0 | LIMS3_chr2_109893688_109930625 | LIMS3 |
| sampleid | haplotypeid | ahapid | chapid | thapid | ghapid | gpopname | popname | regionname | genename |
|---|---|---|---|---|---|---|---|---|---|
| HG01175 | hp1 | a0001 | c0001 | t0001 | g0008 | AMR | PUR | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG01175 | hp2 | a0002 | c0002 | t0002 | g0017 | AMR | PUR | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02258 | hp1 | a0001 | c0001 | t0001 | g0002 | AFR | ACB | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02258 | hp2 | a0002 | c0002 | t0002 | g0018 | AFR | ACB | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02572 | hp1 | a0001 | c0001 | t0001 | g0013 | AFR | GWD | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02572 | hp2 | a0001 | c0001 | t0001 | g0016 | AFR | GWD | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02615 | hp1 | a0004 | c0004 | t0001 | g0002 | AFR | GWD | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02615 | hp2 | a0003 | c0003 | t0003 | g0003 | AFR | GWD | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02622 | hp1 | a0001 | c0001 | t0001 | g0012 | AFR | GWD | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02622 | hp2 | a0002 | c0002 | t0004 | g0019 | AFR | GWD | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02630 | hp1 | a0001 | c0001 | t0001 | g0015 | AFR | GWD | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02630 | hp2 | a0001 | c0001 | t0001 | g0010 | AFR | GWD | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02723 | hp1 | a0001 | c0001 | t0001 | g0009 | AFR | GWD | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG02723 | hp2 | a0001 | c0001 | t0001 | g0014 | AFR | GWD | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG03139 | hp1 | a0001 | c0001 | t0001 | g0011 | AFR | ESN | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG03139 | hp2 | a0001 | c0001 | t0001 | g0007 | AFR | ESN | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG03225 | hp1 | a0001 | c0001 | t0001 | g0006 | AFR | MSL | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG03225 | hp2 | a0001 | c0001 | t0001 | g0001 | AFR | MSL | LIMS3_chr2_109893688_109930625 | LIMS3 |
| NA19043 | hp1 | a0001 | c0001 | t0001 | g0001 | AFR | LWK | LIMS3_chr2_109893688_109930625 | LIMS3 |
| NA19043 | hp2 | a0001 | c0001 | t0001 | g0005 | AFR | LWK | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG06807 | hp1 | a0001 | c0001 | t0001 | g0004 | AFR | USA | LIMS3_chr2_109893688_109930625 | LIMS3 |
| HG06807 | hp2 | a0002 | c0002 | t0002 | g0020 | AFR | USA | LIMS3_chr2_109893688_109930625 | LIMS3 |
| chr:pos | ref | alt | # # of ahapid:amio-acid(protein) level
|
ahapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr2:109903267
|
C | T | 1 | a0004 | 1 | HG02615.hp1 | missense_variant | MODERATE | c.197C>T | p.Ala66Val | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/10 | 238/2094 | 197/1197 | 66/398 | chr2 | 109903267 | ||
| chr2:109903291
|
G | A | 1 | a0003 | 1 | HG02615.hp2 | missense_variant | MODERATE | c.221G>A | p.Arg74His | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/10 | 262/2094 | 221/1197 | 74/398 | chr2 | 109903291 | ||
| chr2:109903321
|
C | A | 2 | a0002a0003 | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
missense_variant | MODERATE | c.251C>A | p.Thr84Lys | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/10 | 292/2094 | 251/1197 | 84/398 | chr2 | 109903321 |
| chr:pos | ref | alt | # # of chapid
|
chapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr2:109903370
|
C | T | 1 | a0003c0003 | 1 | HG02615.hp2 | synonymous_variant | LOW | c.300C>T | p.Cys100Cys | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/10 | 341/2094 | 300/1197 | 100/398 | chr2 | 109903370 |
| chr:pos | ref | alt | # # of thapid:transcript level
|
thapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr2:109924964
|
C | A | 1 | a0003c0003t0003 | 1 | HG02615.hp2 | 3_prime_UTR_variant | MODIFIER | c.*195C>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 10/10 | 195 | chr2 | 109924964 | |||||
| chr2:109925021
|
G | A | 2 | a0002c0002t0002a0002c0002t0004 | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
3_prime_UTR_variant | MODIFIER | c.*252G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 10/10 | 252 | chr2 | 109925021 | |||||
| chr2:109925151
|
C | CA | 1 | a0002c0002t0002 | 3 | HG01175.hp2 HG02258.hp2 HG06807.hp2 |
3_prime_UTR_variant | MODIFIER | c.*400dupA | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 10/10 | 401 | INFO_REALIGN_3_PRIME | chr2 | 109925151 |
| chr:pos | ref | alt | # # of ghapid:genebody level
|
ghapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr2:109899046
|
C | T | 5 | a0001c0001t0001g0016a0002c0002t0002g0017a0002c0002t0002g0018others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02572.hp2 others(2): Show |
intron_variant | MODIFIER | c.182+136C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109899046 | ||||||
| chr2:109899931
|
G | T | 2 | a0001c0001t0001g0014a0001c0001t0001g0015 | 2 | HG02630.hp1 HG02723.hp2 |
intron_variant | MODIFIER | c.182+1021G>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109899931 | ||||||
| chr2:109899964
|
T | TATAG | 2 | a0001c0001t0001g0012a0001c0001t0001g0013 | 2 | HG02572.hp1 HG02622.hp1 |
intron_variant | MODIFIER | c.182+1086_182+1089d others(6): Show |
LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | INFO_REALIGN_3_PRIME | chr2 | 109899964 | |||||
| chr2:109899964
|
T | TATAGATA others(1): Show |
4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.182+1082_182+1089d others(10): Show |
LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | INFO_REALIGN_3_PRIME | chr2 | 109899964 | |||||
| chr2:109900174
|
AAC | A | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.182+1266_182+1267d others(4): Show |
LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | INFO_REALIGN_3_PRIME | chr2 | 109900174 | |||||
| chr2:109900339
|
G | A | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.182+1429G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109900339 | ||||||
| chr2:109900518
|
A | C | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.182+1608A>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109900518 | ||||||
| chr2:109901037
|
T | A | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.182+2127T>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109901037 | ||||||
| chr2:109901066
|
C | T | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.182+2156C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109901066 | ||||||
| chr2:109901308
|
A | G | 8 | a0001c0001t0001g0014a0001c0001t0001g0015a0001c0001t0001g0016others(5): Show | 8 | HG01175.hp2 HG02258.hp2 HG02572.hp2 others(5): Show |
intron_variant | MODIFIER | c.183-1945A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109901308 | ||||||
| chr2:109901362
|
G | C | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.183-1891G>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109901362 | ||||||
| chr2:109901446
|
T | G | 8 | a0001c0001t0001g0014a0001c0001t0001g0015a0001c0001t0001g0016others(5): Show | 8 | HG01175.hp2 HG02258.hp2 HG02572.hp2 others(5): Show |
intron_variant | MODIFIER | c.183-1807T>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109901446 | ||||||
| chr2:109901565
|
G | C | 3 | a0001c0001t0001g0014a0001c0001t0001g0015a0001c0001t0001g0016 | 3 | HG02572.hp2 HG02630.hp1 HG02723.hp2 |
intron_variant | MODIFIER | c.183-1688G>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109901565 | ||||||
| chr2:109901684
|
A | G | 3 | a0001c0001t0001g0014a0001c0001t0001g0015a0001c0001t0001g0016 | 3 | HG02572.hp2 HG02630.hp1 HG02723.hp2 |
intron_variant | MODIFIER | c.183-1569A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109901684 | ||||||
| chr2:109902415
|
T | C | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.183-838T>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109902415 | ||||||
| chr2:109902442
|
C | G | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.183-811C>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109902442 | ||||||
| chr2:109902551
|
A | G | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.183-702A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109902551 | ||||||
| chr2:109903134
|
T | G | 3 | a0001c0001t0001g0004a0001c0001t0001g0005a0001c0001t0001g0014 | 3 | HG02723.hp2 HG06807.hp1 NA19043.hp2 |
intron_variant | MODIFIER | c.183-119T>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 1/9 | chr2 | 109903134 | ||||||
| chr2:109903453
|
A | G | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+41A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109903453 | ||||||
| chr2:109903461
|
G | T | 3 | a0001c0001t0001g0014a0001c0001t0001g0015a0001c0001t0001g0016 | 3 | HG02572.hp2 HG02630.hp1 HG02723.hp2 |
intron_variant | MODIFIER | c.342+49G>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109903461 | ||||||
| chr2:109903471
|
C | T | 1 | a0002c0002t0002g0020 | 1 | HG06807.hp2 | intron_variant | MODIFIER | c.342+59C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109903471 | ||||||
| chr2:109903485
|
A | C | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+73A>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109903485 | ||||||
| chr2:109903573
|
T | G | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.342+161T>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109903573 | ||||||
| chr2:109903777
|
C | T | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+365C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109903777 | ||||||
| chr2:109903834
|
C | T | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.342+422C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109903834 | ||||||
| chr2:109904229
|
G | A | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.342+817G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109904229 | ||||||
| chr2:109904349
|
C | G | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+937C>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109904349 | ||||||
| chr2:109904423
|
G | A | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.342+1011G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109904423 | ||||||
| chr2:109904448
|
C | A | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.342+1036C>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109904448 | ||||||
| chr2:109904917
|
C | T | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.342+1505C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109904917 | ||||||
| chr2:109904980
|
C | A | 1 | a0001c0001t0001g0006 | 1 | HG03225.hp1 | intron_variant | MODIFIER | c.342+1568C>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109904980 | ||||||
| chr2:109904984
|
CT | C | 6 | a0001c0001t0001g0006a0002c0002t0002g0017a0002c0002t0002g0018others(3): Show | 6 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(3): Show |
intron_variant | MODIFIER | c.342+1588delT | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | INFO_REALIGN_3_PRIME | chr2 | 109904984 | |||||
| chr2:109905103
|
G | A | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.342+1691G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109905103 | ||||||
| chr2:109905325
|
A | G | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+1913A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109905325 | ||||||
| chr2:109905543
|
T | C | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.342+2131T>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109905543 | ||||||
| chr2:109905888
|
G | A | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+2476G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109905888 | ||||||
| chr2:109906030
|
C | T | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+2618C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109906030 | ||||||
| chr2:109906031
|
A | G | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+2619A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109906031 | ||||||
| chr2:109906097
|
G | A | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.342+2685G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109906097 | ||||||
| chr2:109906176
|
G | A | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.342+2764G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109906176 | ||||||
| chr2:109906285
|
GA | G | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+2883delA | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | INFO_REALIGN_3_PRIME | chr2 | 109906285 | |||||
| chr2:109906590
|
G | A | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+3178G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109906590 | ||||||
| chr2:109906951
|
T | A | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.342+3539T>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109906951 | ||||||
| chr2:109907023
|
A | G | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.342+3611A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109907023 | ||||||
| chr2:109907397
|
T | A | 1 | a0001c0001t0001g0001 | 2 | HG03225.hp2 NA19043.hp1 |
intron_variant | MODIFIER | c.342+3985T>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109907397 | ||||||
| chr2:109907559
|
A | G | 3 | a0001c0001t0001g0014a0001c0001t0001g0015a0001c0001t0001g0016 | 3 | HG02572.hp2 HG02630.hp1 HG02723.hp2 |
intron_variant | MODIFIER | c.342+4147A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109907559 | ||||||
| chr2:109907656
|
A | G | 7 | a0001c0001t0001g0014a0001c0001t0001g0015a0001c0001t0001g0016others(4): Show | 7 | HG01175.hp2 HG02258.hp2 HG02572.hp2 others(4): Show |
intron_variant | MODIFIER | c.342+4244A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109907656 | ||||||
| chr2:109907912
|
T | C | 2 | a0001c0001t0001g0004a0001c0001t0001g0005 | 2 | HG06807.hp1 NA19043.hp2 |
intron_variant | MODIFIER | c.342+4500T>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109907912 | ||||||
| chr2:109908886
|
C | A | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.342+5474C>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109908886 | ||||||
| chr2:109908946
|
G | C | 7 | a0001c0001t0001g0014a0001c0001t0001g0015a0001c0001t0001g0016others(4): Show | 7 | HG01175.hp2 HG02258.hp2 HG02572.hp2 others(4): Show |
intron_variant | MODIFIER | c.343-5465G>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109908946 | ||||||
| chr2:109910438
|
A | G | 3 | a0001c0001t0001g0014a0001c0001t0001g0015a0001c0001t0001g0016 | 3 | HG02572.hp2 HG02630.hp1 HG02723.hp2 |
intron_variant | MODIFIER | c.343-3973A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109910438 | ||||||
| chr2:109910449
|
T | A | 9 | a0001c0001t0001g0012a0001c0001t0001g0014a0001c0001t0001g0015others(6): Show | 9 | HG01175.hp2 HG02258.hp2 HG02572.hp2 others(6): Show |
intron_variant | MODIFIER | c.343-3962T>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109910449 | ||||||
| chr2:109910452
|
T | A | 6 | a0001c0001t0001g0007a0002c0002t0002g0017a0002c0002t0002g0018others(3): Show | 6 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(3): Show |
intron_variant | MODIFIER | c.343-3959T>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109910452 | ||||||
| chr2:109911597
|
G | T | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.343-2814G>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109911597 | ||||||
| chr2:109911871
|
CTAGCTAT others(7): Show |
C | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.343-2523_343-2510d others(16): Show |
LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | INFO_REALIGN_3_PRIME | chr2 | 109911871 | |||||
| chr2:109912086
|
G | T | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.343-2325G>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109912086 | ||||||
| chr2:109912216
|
T | C | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.343-2195T>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109912216 | ||||||
| chr2:109912232
|
C | T | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.343-2179C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109912232 | ||||||
| chr2:109912429
|
T | C | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.343-1982T>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109912429 | ||||||
| chr2:109912836
|
A | G | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.343-1575A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109912836 | ||||||
| chr2:109913020
|
G | A | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.343-1391G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109913020 | ||||||
| chr2:109913613
|
C | A | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.343-798C>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109913613 | ||||||
| chr2:109914212
|
C | T | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.343-199C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109914212 | ||||||
| chr2:109914248
|
A | G | 1 | a0001c0001t0001g0011 | 1 | HG03139.hp1 | intron_variant | MODIFIER | c.343-163A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 2/9 | chr2 | 109914248 | ||||||
| chr2:109914507
|
A | C | 1 | a0001c0001t0001g0010 | 1 | HG02630.hp2 | intron_variant | MODIFIER | c.409+30A>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 3/9 | chr2 | 109914507 | ||||||
| chr2:109914628
|
C | CG | 2 | a0001c0001t0001g0008a0002c0002t0002g0017 | 2 | HG01175.hp1 HG01175.hp2 |
intron_variant | MODIFIER | c.409+153dupG | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 3/9 | INFO_REALIGN_3_PRIME | chr2 | 109914628 | |||||
| chr2:109914677
|
A | G | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.409+200A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 3/9 | chr2 | 109914677 | ||||||
| chr2:109914857
|
G | T | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.409+380G>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 3/9 | chr2 | 109914857 | ||||||
| chr2:109914967
|
T | A | 6 | a0001c0001t0001g0007a0002c0002t0002g0017a0002c0002t0002g0018others(3): Show | 6 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(3): Show |
intron_variant | MODIFIER | c.409+490T>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 3/9 | chr2 | 109914967 | ||||||
| chr2:109915110
|
G | A | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.409+633G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 3/9 | chr2 | 109915110 | ||||||
| chr2:109915585
|
C | T | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.410-367C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 3/9 | chr2 | 109915585 | ||||||
| chr2:109915802
|
C | A | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.410-150C>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 3/9 | chr2 | 109915802 | ||||||
| chr2:109916215
|
C | G | 2 | a0001c0001t0001g0004a0001c0001t0001g0005 | 2 | HG06807.hp1 NA19043.hp2 |
intron_variant | MODIFIER | c.530+143C>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 4/9 | chr2 | 109916215 | ||||||
| chr2:109916232
|
G | A | 5 | a0001c0001t0001g0010a0002c0002t0002g0017a0002c0002t0002g0018others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(2): Show |
intron_variant | MODIFIER | c.530+160G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 4/9 | chr2 | 109916232 | ||||||
| chr2:109916460
|
A | G | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.531-47A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 4/9 | chr2 | 109916460 | ||||||
| chr2:109916824
|
C | A | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.680+168C>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109916824 | ||||||
| chr2:109916913
|
A | G | 1 | a0001c0001t0001g0005 | 1 | NA19043.hp2 | intron_variant | MODIFIER | c.680+257A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109916913 | ||||||
| chr2:109917673
|
G | A | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.680+1017G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109917673 | ||||||
| chr2:109917701
|
C | T | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.680+1045C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109917701 | ||||||
| chr2:109917826
|
A | G | 6 | a0001c0001t0001g0007a0002c0002t0002g0017a0002c0002t0002g0018others(3): Show | 6 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(3): Show |
intron_variant | MODIFIER | c.680+1170A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109917826 | ||||||
| chr2:109917903
|
C | T | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.680+1247C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109917903 | ||||||
| chr2:109917905
|
C | T | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.680+1249C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109917905 | ||||||
| chr2:109917943
|
C | T | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.680+1287C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109917943 | ||||||
| chr2:109917996
|
C | T | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.680+1340C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109917996 | ||||||
| chr2:109918336
|
C | CA | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.681-1138dupA | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | INFO_REALIGN_3_PRIME | chr2 | 109918336 | |||||
| chr2:109918352
|
A | G | 1 | a0003c0003t0003g0003 | 1 | HG02615.hp2 | intron_variant | MODIFIER | c.681-1141A>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109918352 | ||||||
| chr2:109918982
|
T | C | 1 | a0002c0002t0002g0018 | 1 | HG02258.hp2 | intron_variant | MODIFIER | c.681-511T>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109918982 | ||||||
| chr2:109919013
|
T | C | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.681-480T>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 5/9 | chr2 | 109919013 | ||||||
| chr2:109919661
|
A | C | 1 | a0001c0001t0001g0011 | 1 | HG03139.hp1 | intron_variant | MODIFIER | c.831+18A>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 6/9 | chr2 | 109919661 | ||||||
| chr2:109919698
|
A | C | 3 | a0001c0001t0001g0014a0001c0001t0001g0015a0003c0003t0003g0003 | 3 | HG02615.hp2 HG02630.hp1 HG02723.hp2 |
intron_variant | MODIFIER | c.831+55A>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 6/9 | chr2 | 109919698 | ||||||
| chr2:109919885
|
G | T | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.831+242G>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 6/9 | chr2 | 109919885 | ||||||
| chr2:109920380
|
T | G | 1 | a0002c0002t0002g0017 | 1 | HG01175.hp2 | intron_variant | MODIFIER | c.924+34T>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 7/9 | chr2 | 109920380 | ||||||
| chr2:109920405
|
G | T | 1 | a0002c0002t0002g0018 | 1 | HG02258.hp2 | intron_variant | MODIFIER | c.924+59G>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 7/9 | chr2 | 109920405 | ||||||
| chr2:109921103
|
C | A | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.925-537C>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 7/9 | chr2 | 109921103 | ||||||
| chr2:109921923
|
C | T | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.973+235C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 8/9 | chr2 | 109921923 | ||||||
| chr2:109922069
|
C | T | 1 | a0001c0001t0001g0005 | 1 | NA19043.hp2 | intron_variant | MODIFIER | c.973+381C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 8/9 | chr2 | 109922069 | ||||||
| chr2:109922510
|
G | A | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.973+822G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 8/9 | chr2 | 109922510 | ||||||
| chr2:109922856
|
T | C | 16 | a0001c0001t0001g0001a0001c0001t0001g0004a0001c0001t0001g0005others(13): Show | 17 | HG01175.hp2 HG02258.hp2 HG02572.hp1 others(14): Show |
intron_variant | MODIFIER | c.973+1168T>C | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 8/9 | chr2 | 109922856 | ||||||
| chr2:109923344
|
C | T | 1 | a0001c0001t0001g0013 | 1 | HG02572.hp1 | intron_variant | MODIFIER | c.974-1004C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 8/9 | chr2 | 109923344 | ||||||
| chr2:109923966
|
C | T | 1 | a0001c0001t0001g0010 | 1 | HG02630.hp2 | intron_variant | MODIFIER | c.974-382C>T | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 8/9 | chr2 | 109923966 | ||||||
| chr2:109924019
|
G | A | 4 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(1): Show | 4 | HG01175.hp2 HG02258.hp2 HG02622.hp2 others(1): Show |
intron_variant | MODIFIER | c.974-329G>A | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 8/9 | chr2 | 109924019 | ||||||
| chr2:109924033
|
C | CA | 3 | a0001c0001t0001g0009a0001c0001t0001g0011a0001c0001t0001g0013 | 3 | HG02572.hp1 HG02723.hp1 HG03139.hp1 |
intron_variant | MODIFIER | c.974-294dupA | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 8/9 | INFO_REALIGN_3_PRIME | chr2 | 109924033 | |||||
| chr2:109924218
|
C | G | 5 | a0002c0002t0002g0017a0002c0002t0002g0018a0002c0002t0002g0020others(2): Show | 5 | HG01175.hp2 HG02258.hp2 HG02615.hp2 others(2): Show |
intron_variant | MODIFIER | c.974-130C>G | LIMS3 | ENSG00000256977.13 | transcript | ENST00000480744.3 | protein_coding | 8/9 | chr2 | 109924218 |