Joint Open Genome and Omics Platform (JoGo)

Search by Gene

geneid	10943
ensemblid	ENSG00000005302.19
hgncid	7370
symbol	MSL3
name	MSL complex subunit 3
refseq_nuc	NM_078629.4
refseq_prot	NP_523353.2
ensembl_nuc	ENST00000312196.10
ensembl_prot	ENSP00000312244.4
mane_status	MANE Select
chr	chrX
start	11758237
end	11775772
strand	+
ver	v1.2
region	chrX:11758237-11775772
region5000	chrX:11753237-11780772
regionname0	MSL3_chrX_11758237_11775772
regionname5000	MSL3_chrX_11753237_11780772

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aa
a0001	1/1	521	293	80	52	120	13	26	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0002	0/0	521	2	0	0	0	0	2	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0003	0/0	422	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0004	0/0	503	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq
c0001	1/1	1566	274	66	47	120	13	26	MSL3_chrX_11753237_11780772	MSL3	copy fasta
c0002	0/0	1566	10	5	5	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
c0003	0/0	1566	7	7	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
c0004	0/0	1566	2	0	0	0	0	2	MSL3_chrX_11753237_11780772	MSL3	copy fasta
c0005	0/0	1566	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
c0006	0/0	1566	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
c0007	0/0	1567	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
c0008	0/0	1566	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta

thapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq
t0001	1/1	721	251	78	48	86	12	25	MSL3_chrX_11753237_11780772	MSL3	copy fasta
t0002	0/0	721	44	2	5	33	1	3	MSL3_chrX_11753237_11780772	MSL3	copy fasta
t0003	0/0	723	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
t0004	0/0	721	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
g0001	0/0	100	8	20	54	5	13	MSL3_chrX_11753237_11780772	MSL3
g0002	0/0	27	1	4	21	1	0	MSL3_chrX_11753237_11780772	MSL3
g0003	0/0	9	5	2	0	0	2	MSL3_chrX_11753237_11780772	MSL3
g0004	0/0	9	8	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0005	1/0	8	1	4	0	1	1	MSL3_chrX_11753237_11780772	MSL3
g0006	0/0	8	3	4	0	1	0	MSL3_chrX_11753237_11780772	MSL3
g0007	0/0	7	0	0	7	0	0	MSL3_chrX_11753237_11780772	MSL3
g0008	0/0	7	7	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0009	0/0	6	0	0	6	0	0	MSL3_chrX_11753237_11780772	MSL3
g0010	0/0	5	5	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0011	0/0	4	4	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0012	0/0	4	4	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0013	0/0	4	3	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0014	0/0	3	0	0	3	0	0	MSL3_chrX_11753237_11780772	MSL3
g0015	0/0	3	2	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0016	0/0	3	0	0	0	3	0	MSL3_chrX_11753237_11780772	MSL3
g0017	0/0	2	2	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0018	0/0	2	0	0	2	0	0	MSL3_chrX_11753237_11780772	MSL3
g0019	0/0	2	2	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0020	0/0	2	0	0	0	0	2	MSL3_chrX_11753237_11780772	MSL3
g0021	0/0	2	0	2	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0022	0/0	2	0	2	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0023	0/0	2	0	0	2	0	0	MSL3_chrX_11753237_11780772	MSL3
g0024	0/0	2	0	1	0	0	1	MSL3_chrX_11753237_11780772	MSL3
g0025	0/0	2	0	1	0	0	1	MSL3_chrX_11753237_11780772	MSL3
g0026	0/0	2	0	0	2	0	0	MSL3_chrX_11753237_11780772	MSL3
g0027	0/0	2	2	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0028	0/0	2	2	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0029	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0030	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0031	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0032	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0033	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0034	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0035	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0036	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0037	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
g0038	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0039	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0040	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0041	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
g0042	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0043	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0044	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
g0045	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0046	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0047	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0048	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0049	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0050	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0051	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0052	0/0	1	0	0	0	1	0	MSL3_chrX_11753237_11780772	MSL3
g0053	0/0	1	0	0	0	1	0	MSL3_chrX_11753237_11780772	MSL3
g0054	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0055	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0056	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0057	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0058	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
g0059	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0060	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0061	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0062	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
g0063	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0064	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0065	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0066	0/1	1	0	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0067	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0068	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0069	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
g0070	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0071	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0072	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
g0073	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0074	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0075	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0076	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0077	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0078	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0079	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0080	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0081	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0082	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0083	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0084	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0085	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0086	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0087	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0088	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0089	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
g0090	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0091	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
g0092	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0093	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
g0094	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3

achapid	ahapid	chapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	acseq
a0001c0001	a0001	c0001	1/1	274	66	47	120	13	26	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0001c0002	a0001	c0002	0/0	10	5	5	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0001c0003	a0001	c0003	0/0	7	7	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0001c0005	a0001	c0005	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0001c0008	a0001	c0008	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0002c0004	a0002	c0004	0/0	2	0	0	0	0	2	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0003c0007	a0003	c0007	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0004c0006	a0004	c0006	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta

acthapid	ahapid	chapid	thapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	actseq
a0001c0001t0001	a0001	c0001	t0001	1/1	229	64	42	86	12	23	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0001c0001t0002	a0001	c0001	t0002	0/0	44	2	5	33	1	3	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0001c0001t0004	a0001	c0001	t0004	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0001c0002t0001	a0001	c0002	t0001	0/0	10	5	5	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0001c0003t0001	a0001	c0003	t0001	0/0	7	7	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0001c0005t0001	a0001	c0005	t0001	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0001c0008t0001	a0001	c0008	t0001	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0002c0004t0001	a0002	c0004	t0001	0/0	2	0	0	0	0	2	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0003c0007t0001	a0003	c0007	t0001	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta
a0004c0006t0003	a0004	c0006	t0003	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3	copy fasta

actghapid	ahapid	chapid	thapid	ghapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
a0001c0001t0001g0001	a0001	c0001	t0001	g0001	0/0	94	7	20	51	5	11	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0003	a0001	c0001	t0001	g0003	0/0	6	4	0	0	0	2	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0004	a0001	c0001	t0001	g0004	0/0	9	8	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0005	a0001	c0001	t0001	g0005	1/0	8	1	4	0	1	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0006	a0001	c0001	t0001	g0006	0/0	8	3	4	0	1	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0007	a0001	c0001	t0001	g0007	0/0	6	0	0	6	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0008	a0001	c0001	t0001	g0008	0/0	7	7	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0009	a0001	c0001	t0001	g0009	0/0	6	0	0	6	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0010	a0001	c0001	t0001	g0010	0/0	5	5	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0012	a0001	c0001	t0001	g0012	0/0	4	4	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0013	a0001	c0001	t0001	g0013	0/0	4	3	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0014	a0001	c0001	t0001	g0014	0/0	3	0	0	3	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0016	a0001	c0001	t0001	g0016	0/0	3	0	0	0	3	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0017	a0001	c0001	t0001	g0017	0/0	2	2	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0018	a0001	c0001	t0001	g0018	0/0	2	0	0	2	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0020	a0001	c0001	t0001	g0020	0/0	2	0	0	0	0	2	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0021	a0001	c0001	t0001	g0021	0/0	2	0	2	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0024	a0001	c0001	t0001	g0024	0/0	2	0	1	0	0	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0025	a0001	c0001	t0001	g0025	0/0	2	0	1	0	0	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0026	a0001	c0001	t0001	g0026	0/0	2	0	0	2	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0027	a0001	c0001	t0001	g0027	0/0	2	2	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0028	a0001	c0001	t0001	g0028	0/0	2	2	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0029	a0001	c0001	t0001	g0029	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0030	a0001	c0001	t0001	g0030	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0031	a0001	c0001	t0001	g0031	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0034	a0001	c0001	t0001	g0034	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0035	a0001	c0001	t0001	g0035	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0036	a0001	c0001	t0001	g0036	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0037	a0001	c0001	t0001	g0037	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0038	a0001	c0001	t0001	g0038	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0039	a0001	c0001	t0001	g0039	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0040	a0001	c0001	t0001	g0040	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0042	a0001	c0001	t0001	g0042	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0046	a0001	c0001	t0001	g0046	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0047	a0001	c0001	t0001	g0047	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0048	a0001	c0001	t0001	g0048	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0049	a0001	c0001	t0001	g0049	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0050	a0001	c0001	t0001	g0050	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0052	a0001	c0001	t0001	g0052	0/0	1	0	0	0	1	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0053	a0001	c0001	t0001	g0053	0/0	1	0	0	0	1	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0054	a0001	c0001	t0001	g0054	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0055	a0001	c0001	t0001	g0055	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0058	a0001	c0001	t0001	g0058	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0059	a0001	c0001	t0001	g0059	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0062	a0001	c0001	t0001	g0062	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0063	a0001	c0001	t0001	g0063	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0066	a0001	c0001	t0001	g0066	0/1	1	0	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0067	a0001	c0001	t0001	g0067	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0068	a0001	c0001	t0001	g0068	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0069	a0001	c0001	t0001	g0069	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0070	a0001	c0001	t0001	g0070	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0071	a0001	c0001	t0001	g0071	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0074	a0001	c0001	t0001	g0074	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0075	a0001	c0001	t0001	g0075	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0076	a0001	c0001	t0001	g0076	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0077	a0001	c0001	t0001	g0077	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0078	a0001	c0001	t0001	g0078	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0079	a0001	c0001	t0001	g0079	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0080	a0001	c0001	t0001	g0080	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0081	a0001	c0001	t0001	g0081	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0083	a0001	c0001	t0001	g0083	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0084	a0001	c0001	t0001	g0084	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0085	a0001	c0001	t0001	g0085	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0086	a0001	c0001	t0001	g0086	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0087	a0001	c0001	t0001	g0087	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0088	a0001	c0001	t0001	g0088	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0089	a0001	c0001	t0001	g0089	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0090	a0001	c0001	t0001	g0090	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0091	a0001	c0001	t0001	g0091	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0001g0092	a0001	c0001	t0001	g0092	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0001	a0001	c0001	t0002	g0001	0/0	3	0	0	3	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0002	a0001	c0001	t0002	g0002	0/0	26	1	4	20	1	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0007	a0001	c0001	t0002	g0007	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0023	a0001	c0001	t0002	g0023	0/0	2	0	0	2	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0032	a0001	c0001	t0002	g0032	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0033	a0001	c0001	t0002	g0033	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0041	a0001	c0001	t0002	g0041	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0043	a0001	c0001	t0002	g0043	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0044	a0001	c0001	t0002	g0044	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0045	a0001	c0001	t0002	g0045	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0056	a0001	c0001	t0002	g0056	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0064	a0001	c0001	t0002	g0064	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0065	a0001	c0001	t0002	g0065	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0072	a0001	c0001	t0002	g0072	0/0	1	0	0	0	0	1	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0073	a0001	c0001	t0002	g0073	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0002g0093	a0001	c0001	t0002	g0093	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0001t0004g0002	a0001	c0001	t0004	g0002	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0002t0001g0003	a0001	c0002	t0001	g0003	0/0	3	1	2	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0002t0001g0015	a0001	c0002	t0001	g0015	0/0	3	2	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0002t0001g0019	a0001	c0002	t0001	g0019	0/0	2	2	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0002t0001g0022	a0001	c0002	t0001	g0022	0/0	2	0	2	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0003t0001g0011	a0001	c0003	t0001	g0011	0/0	4	4	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0003t0001g0057	a0001	c0003	t0001	g0057	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0003t0001g0060	a0001	c0003	t0001	g0060	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0003t0001g0061	a0001	c0003	t0001	g0061	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0005t0001g0001	a0001	c0005	t0001	g0001	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0001c0008t0001g0082	a0001	c0008	t0001	g0082	0/0	1	1	0	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0002c0004t0001g0001	a0002	c0004	t0001	g0001	0/0	2	0	0	0	0	2	MSL3_chrX_11753237_11780772	MSL3
a0003c0007t0001g0094	a0003	c0007	t0001	g0094	0/0	1	0	1	0	0	0	MSL3_chrX_11753237_11780772	MSL3
a0004c0006t0003g0051	a0004	c0006	t0003	g0051	0/0	1	0	0	1	0	0	MSL3_chrX_11753237_11780772	MSL3

sampleid	haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	MSL3_chrX_11753237_11780772	MSL3
HG00099	hp2	a0001	c0001	t0001	g0053	EUR	GBR	MSL3_chrX_11753237_11780772	MSL3
HG00140	hp1	a0001	c0001	t0001	g0005	EUR	GBR	MSL3_chrX_11753237_11780772	MSL3
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	MSL3_chrX_11753237_11780772	MSL3
HG00323	hp1	a0001	c0001	t0001	g0006	EUR	FIN	MSL3_chrX_11753237_11780772	MSL3
HG00323	hp2	a0001	c0001	t0002	g0002	EUR	FIN	MSL3_chrX_11753237_11780772	MSL3
HG00438	hp1	a0001	c0001	t0001	g0040	EAS	CHS	MSL3_chrX_11753237_11780772	MSL3
HG00438	hp2	a0001	c0001	t0002	g0002	EAS	CHS	MSL3_chrX_11753237_11780772	MSL3
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MSL3_chrX_11753237_11780772	MSL3
HG00558	hp2	a0001	c0001	t0002	g0001	EAS	CHS	MSL3_chrX_11753237_11780772	MSL3
HG00609	hp1	a0001	c0001	t0002	g0002	EAS	CHS	MSL3_chrX_11753237_11780772	MSL3
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MSL3_chrX_11753237_11780772	MSL3
HG00639	hp1	a0001	c0001	t0001	g0005	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG00639	hp2	a0001	c0001	t0002	g0002	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG00642	hp1	a0001	c0001	t0002	g0002	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG00673	hp1	a0001	c0001	t0002	g0002	EAS	CHS	MSL3_chrX_11753237_11780772	MSL3
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG00735	hp2	a0001	c0001	t0001	g0090	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG00738	hp1	a0001	c0001	t0001	g0091	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01070	hp1	a0001	c0001	t0001	g0006	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01070	hp2	a0001	c0002	t0001	g0003	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01071	hp1	a0001	c0002	t0001	g0003	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01074	hp1	a0001	c0001	t0002	g0002	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01099	hp1	a0001	c0001	t0002	g0002	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01106	hp1	a0001	c0001	t0001	g0004	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01109	hp1	a0001	c0002	t0001	g0015	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01167	hp1	a0001	c0002	t0001	g0022	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01168	hp1	a0003	c0007	t0001	g0094	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01168	hp2	a0001	c0001	t0001	g0006	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01169	hp1	a0001	c0001	t0001	g0030	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01169	hp2	a0001	c0002	t0001	g0022	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01175	hp2	a0001	c0001	t0001	g0021	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01192	hp1	a0001	c0001	t0001	g0024	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSL3_chrX_11753237_11780772	MSL3
HG01255	hp1	a0001	c0001	t0001	g0006	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01256	hp1	a0001	c0001	t0001	g0025	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01257	hp2	a0001	c0001	t0001	g0006	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01346	hp2	a0001	c0001	t0001	g0021	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01358	hp1	a0001	c0001	t0001	g0005	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01361	hp2	a0001	c0001	t0001	g0005	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01433	hp1	a0001	c0001	t0001	g0067	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01496	hp1	a0001	c0001	t0001	g0005	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MSL3_chrX_11753237_11780772	MSL3
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MSL3_chrX_11753237_11780772	MSL3
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MSL3_chrX_11753237_11780772	MSL3
HG01516	hp2	a0001	c0001	t0001	g0016	EUR	IBS	MSL3_chrX_11753237_11780772	MSL3
HG01517	hp1	a0001	c0001	t0001	g0016	EUR	IBS	MSL3_chrX_11753237_11780772	MSL3
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	MSL3_chrX_11753237_11780772	MSL3
HG01884	hp1	a0001	c0001	t0001	g0006	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG01884	hp2	a0001	c0001	t0001	g0001	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG01891	hp1	a0001	c0003	t0001	g0011	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG01891	hp2	a0001	c0002	t0001	g0019	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG01928	hp1	a0001	c0001	t0001	g0042	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG01934	hp1	a0001	c0001	t0002	g0033	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG01978	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG02004	hp1	a0001	c0001	t0001	g0047	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG02004	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02027	hp1	a0001	c0001	t0002	g0002	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02040	hp1	a0001	c0001	t0001	g0036	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02055	hp1	a0001	c0001	t0001	g0013	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02056	hp1	a0001	c0001	t0001	g0007	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02074	hp1	a0001	c0001	t0002	g0007	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02080	hp1	a0001	c0001	t0001	g0048	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02083	hp1	a0001	c0001	t0002	g0001	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02132	hp1	a0001	c0001	t0004	g0002	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02145	hp1	a0001	c0001	t0001	g0034	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02148	hp1	a0001	c0001	t0001	g0050	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG02155	hp1	a0001	c0001	t0001	g0049	EAS	CDX	MSL3_chrX_11753237_11780772	MSL3
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	MSL3_chrX_11753237_11780772	MSL3
HG02165	hp1	a0001	c0001	t0002	g0001	EAS	CDX	MSL3_chrX_11753237_11780772	MSL3
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	MSL3_chrX_11753237_11780772	MSL3
HG02257	hp1	a0001	c0001	t0001	g0005	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02257	hp2	a0001	c0001	t0001	g0004	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02258	hp1	a0001	c0001	t0001	g0004	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02273	hp1	a0001	c0001	t0001	g0055	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG02280	hp1	a0001	c0008	t0001	g0082	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02280	hp2	a0001	c0001	t0001	g0008	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG02293	hp2	a0001	c0001	t0001	g0013	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG02300	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSL3_chrX_11753237_11780772	MSL3
HG02451	hp1	a0001	c0001	t0001	g0081	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02523	hp1	a0001	c0001	t0002	g0023	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02523	hp2	a0001	c0001	t0001	g0071	EAS	KHV	MSL3_chrX_11753237_11780772	MSL3
HG02572	hp1	a0001	c0001	t0001	g0027	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG02615	hp1	a0001	c0001	t0001	g0004	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02615	hp2	a0001	c0001	t0001	g0008	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02622	hp1	a0001	c0001	t0001	g0003	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02630	hp1	a0001	c0001	t0001	g0004	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02630	hp2	a0001	c0001	t0001	g0006	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02647	hp1	a0001	c0001	t0001	g0006	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG02683	hp2	a0001	c0001	t0001	g0020	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG02717	hp1	a0001	c0001	t0001	g0017	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02723	hp1	a0001	c0001	t0001	g0008	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02723	hp2	a0001	c0001	t0001	g0010	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02735	hp1	a0001	c0001	t0001	g0069	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG02738	hp1	a0001	c0001	t0001	g0025	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG02809	hp1	a0001	c0002	t0001	g0003	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02809	hp2	a0001	c0005	t0001	g0001	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02818	hp1	a0001	c0001	t0001	g0013	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02818	hp2	a0001	c0001	t0001	g0012	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02886	hp1	a0001	c0001	t0001	g0084	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02886	hp2	a0001	c0001	t0001	g0077	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02895	hp1	a0001	c0001	t0001	g0028	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02897	hp1	a0001	c0003	t0001	g0060	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02897	hp2	a0001	c0001	t0001	g0028	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG02922	hp1	a0001	c0001	t0001	g0080	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG02922	hp2	a0001	c0001	t0001	g0012	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG02965	hp1	a0001	c0001	t0001	g0087	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG02970	hp1	a0001	c0001	t0001	g0004	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG02970	hp2	a0001	c0001	t0001	g0027	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG02976	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG02976	hp2	a0001	c0001	t0001	g0012	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG03017	hp1	a0001	c0001	t0001	g0003	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03041	hp1	a0001	c0002	t0001	g0019	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG03041	hp2	a0001	c0001	t0001	g0004	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG03098	hp1	a0001	c0001	t0001	g0078	AFR	MSL	MSL3_chrX_11753237_11780772	MSL3
HG03130	hp1	a0001	c0001	t0001	g0008	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG03139	hp1	a0001	c0001	t0001	g0004	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG03195	hp1	a0001	c0003	t0001	g0057	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG03195	hp2	a0001	c0001	t0001	g0010	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG03209	hp1	a0001	c0001	t0001	g0088	AFR	MSL	MSL3_chrX_11753237_11780772	MSL3
HG03225	hp1	a0001	c0001	t0001	g0070	AFR	MSL	MSL3_chrX_11753237_11780772	MSL3
HG03239	hp1	a0001	c0001	t0001	g0062	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03239	hp2	a0001	c0001	t0001	g0089	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03453	hp1	a0001	c0001	t0001	g0068	AFR	MSL	MSL3_chrX_11753237_11780772	MSL3
HG03453	hp2	a0001	c0001	t0001	g0079	AFR	MSL	MSL3_chrX_11753237_11780772	MSL3
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	MSL3_chrX_11753237_11780772	MSL3
HG03486	hp2	a0001	c0003	t0001	g0011	AFR	MSL	MSL3_chrX_11753237_11780772	MSL3
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03491	hp2	a0001	c0001	t0002	g0044	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03516	hp1	a0001	c0001	t0001	g0010	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG03516	hp2	a0001	c0001	t0001	g0008	AFR	ESN	MSL3_chrX_11753237_11780772	MSL3
HG03540	hp1	a0001	c0001	t0001	g0029	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG03540	hp2	a0001	c0003	t0001	g0011	AFR	GWD	MSL3_chrX_11753237_11780772	MSL3
HG03579	hp1	a0001	c0001	t0001	g0003	AFR	MSL	MSL3_chrX_11753237_11780772	MSL3
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	MSL3_chrX_11753237_11780772	MSL3
HG03704	hp1	a0001	c0001	t0001	g0058	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03704	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03710	hp1	a0001	c0001	t0001	g0020	SAS	PJL	MSL3_chrX_11753237_11780772	MSL3
HG03831	hp1	a0001	c0001	t0001	g0024	SAS	BEB	MSL3_chrX_11753237_11780772	MSL3
HG03831	hp2	a0001	c0001	t0001	g0037	SAS	BEB	MSL3_chrX_11753237_11780772	MSL3
HG03942	hp1	a0001	c0001	t0001	g0003	SAS	BEB	MSL3_chrX_11753237_11780772	MSL3
HG04115	hp1	a0001	c0001	t0002	g0072	SAS	STU	MSL3_chrX_11753237_11780772	MSL3
HG04184	hp1	a0002	c0004	t0001	g0001	SAS	BEB	MSL3_chrX_11753237_11780772	MSL3
HG04184	hp2	a0001	c0001	t0001	g0005	SAS	BEB	MSL3_chrX_11753237_11780772	MSL3
HG04199	hp1	a0002	c0004	t0001	g0001	SAS	STU	MSL3_chrX_11753237_11780772	MSL3
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	MSL3_chrX_11753237_11780772	MSL3
HG04228	hp1	a0001	c0001	t0002	g0041	SAS	STU	MSL3_chrX_11753237_11780772	MSL3
NA18522	hp1	a0001	c0001	t0001	g0004	AFR	YRI	MSL3_chrX_11753237_11780772	MSL3
NA18612	hp1	a0001	c0001	t0002	g0023	EAS	CHB	MSL3_chrX_11753237_11780772	MSL3
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	MSL3_chrX_11753237_11780772	MSL3
NA18906	hp1	a0001	c0001	t0002	g0002	AFR	YRI	MSL3_chrX_11753237_11780772	MSL3
NA18906	hp2	a0001	c0002	t0001	g0015	AFR	YRI	MSL3_chrX_11753237_11780772	MSL3
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18942	hp1	a0001	c0001	t0001	g0009	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18942	hp2	a0001	c0001	t0001	g0076	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18944	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18946	hp1	a0001	c0001	t0001	g0038	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18946	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18947	hp1	a0001	c0001	t0001	g0009	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18947	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18950	hp1	a0001	c0001	t0002	g0032	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18951	hp1	a0001	c0001	t0002	g0073	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18952	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18959	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18965	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18968	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18970	hp1	a0001	c0001	t0001	g0009	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18974	hp1	a0001	c0001	t0002	g0056	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18975	hp1	a0001	c0001	t0001	g0014	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18975	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18984	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18985	hp1	a0001	c0001	t0001	g0007	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18991	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18991	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18992	hp1	a0001	c0001	t0001	g0026	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18992	hp2	a0001	c0001	t0002	g0093	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18993	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18993	hp2	a0001	c0001	t0001	g0014	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18997	hp1	a0001	c0001	t0001	g0018	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA18997	hp2	a0001	c0001	t0001	g0009	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19000	hp1	a0001	c0001	t0001	g0074	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19002	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19002	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19003	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19003	hp2	a0001	c0001	t0001	g0035	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19006	hp1	a0004	c0006	t0003	g0051	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19007	hp1	a0001	c0001	t0001	g0007	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19011	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19011	hp2	a0001	c0001	t0001	g0059	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19012	hp1	a0001	c0001	t0001	g0063	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19030	hp1	a0001	c0001	t0001	g0083	AFR	LWK	MSL3_chrX_11753237_11780772	MSL3
NA19030	hp2	a0001	c0001	t0001	g0001	AFR	LWK	MSL3_chrX_11753237_11780772	MSL3
NA19043	hp1	a0001	c0001	t0001	g0013	AFR	LWK	MSL3_chrX_11753237_11780772	MSL3
NA19054	hp1	a0001	c0001	t0002	g0064	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19054	hp2	a0001	c0001	t0001	g0039	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19055	hp1	a0001	c0001	t0001	g0009	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19057	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19057	hp2	a0001	c0001	t0001	g0007	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19066	hp1	a0001	c0001	t0001	g0009	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19068	hp1	a0001	c0001	t0001	g0014	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19070	hp1	a0001	c0001	t0001	g0054	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19072	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19075	hp1	a0001	c0001	t0001	g0075	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19077	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19077	hp2	a0001	c0001	t0001	g0046	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19081	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19081	hp2	a0001	c0001	t0002	g0043	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19082	hp1	a0001	c0001	t0001	g0092	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19083	hp1	a0001	c0001	t0001	g0007	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19084	hp2	a0001	c0001	t0002	g0065	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19085	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19086	hp1	a0001	c0001	t0001	g0007	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19089	hp1	a0001	c0001	t0001	g0018	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA19240	hp1	a0001	c0001	t0001	g0001	AFR	YRI	MSL3_chrX_11753237_11780772	MSL3
NA19240	hp2	a0001	c0001	t0001	g0017	AFR	YRI	MSL3_chrX_11753237_11780772	MSL3
NA20129	hp1	a0001	c0001	t0002	g0045	AFR	ASW	MSL3_chrX_11753237_11780772	MSL3
NA20129	hp2	a0001	c0001	t0001	g0010	AFR	ASW	MSL3_chrX_11753237_11780772	MSL3
NA20752	hp1	a0001	c0001	t0001	g0016	EUR	TSI	MSL3_chrX_11753237_11780772	MSL3
NA20805	hp1	a0001	c0001	t0001	g0052	EUR	TSI	MSL3_chrX_11753237_11780772	MSL3
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	MSL3_chrX_11753237_11780772	MSL3
HG02109	hp1	a0001	c0002	t0001	g0015	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02109	hp2	a0001	c0001	t0001	g0012	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02486	hp1	a0001	c0001	t0001	g0003	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02559	hp1	a0001	c0001	t0001	g0008	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG02559	hp2	a0001	c0001	t0001	g0003	AFR	ACB	MSL3_chrX_11753237_11780772	MSL3
HG03471	hp1	a0001	c0001	t0001	g0086	AFR	MSL	MSL3_chrX_11753237_11780772	MSL3
HG06807	hp1	a0001	c0003	t0001	g0011	AFR	USA	MSL3_chrX_11753237_11780772	MSL3
HG06807	hp2	a0001	c0003	t0001	g0061	AFR	USA	MSL3_chrX_11753237_11780772	MSL3
NA18955	hp1	a0001	c0001	t0001	g0026	EAS	JPT	MSL3_chrX_11753237_11780772	MSL3
NA20300	hp1	a0001	c0001	t0001	g0008	AFR	USA	MSL3_chrX_11753237_11780772	MSL3
NA20300	hp2	a0001	c0001	t0001	g0031	AFR	USA	MSL3_chrX_11753237_11780772	MSL3
NA21309	hp1	a0001	c0001	t0001	g0085	AFR	LWK	MSL3_chrX_11753237_11780772	MSL3
NA21309	hp2	a0001	c0001	t0001	g0010	AFR	LWK	MSL3_chrX_11753237_11780772	MSL3
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0066	REF	REF	MSL3_chrX_11753237_11780772	MSL3
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0005	REF	REF	MSL3_chrX_11753237_11780772	MSL3

chr:pos	ref	alt	# # of ahapid:amio-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	status	chr	pos
chrX:11761518	A A	G G	1	a0002 a0002	2	HG04184.hp1 HG04199.hp1 HG04184.hp1 HG04199.hp1	missense_variant	MODERATE	c.401A>G c.401A>G	p.Asp134Gly p.Asp134Gly	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	5/13	428/2286	401/1566	134/521		chrX	11761518
chrX:11768655	A A	AG AG	1	a0003 a0003	1	HG01168.hp1 HG01168.hp1	frameshift_variant	HIGH	c.1257dupG c.1257dupG	p.Arg420fs p.Arg420fs	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/13	1285/2286	1258/1566	420/521	INFO_REALIGN_3_PRIME	chrX	11768655
chrX:11775025	T T	A A	1	a0004 a0004	1	NA19006.hp1 NA19006.hp1	stop_gained	HIGH	c.1512T>A c.1512T>A	p.Tyr504* p.Tyr504*	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	13/13	1539/2286	1512/1566	504/521		chrX	11775025

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	chr	pos
chrX:11761513	C C	T T	1	a0001c0003 a0001c0003	7	HG01891.hp1 HG02897.hp1 HG03195.hp1 others(4): Show HG01891.hp1 HG02897.hp1 HG03195.hp1 HG03486.hp2 HG03540.hp2 HG06807.hp1 HG06807.hp2	synonymous_variant	LOW	c.396C>T c.396C>T	p.Ser132Ser p.Ser132Ser	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	5/13	423/2286	396/1566	132/521	chrX	11761513
chrX:11762983	C C	A A	1	a0001c0005 a0001c0005	1	HG02809.hp2 HG02809.hp2	synonymous_variant	LOW	c.735C>A c.735C>A	p.Ile245Ile p.Ile245Ile	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	7/13	762/2286	735/1566	245/521	chrX	11762983
chrX:11765653	C C	T T	1	a0001c0008 a0001c0008	1	HG02280.hp1 HG02280.hp1	synonymous_variant	LOW	c.1095C>T c.1095C>T	p.Ser365Ser p.Ser365Ser	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/13	1122/2286	1095/1566	365/521	chrX	11765653
chrX:11775019	G G	A A	1	a0001c0002 a0001c0002	10	HG01070.hp2 HG01071.hp1 HG01109.hp1 others(7): Show HG01070.hp2 HG01071.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp2 HG01891.hp2 HG02109.hp1 HG02809.hp1 HG03041.hp1 NA18906.hp2	synonymous_variant	LOW	c.1506G>A c.1506G>A	p.Ser502Ser p.Ser502Ser	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	13/13	1533/2286	1506/1566	502/521	chrX	11775019

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:11758249	C C	T T	1	a0001c0001t0004 a0001c0001t0004	1	HG02132.hp1 HG02132.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-15C>T c.-15C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/13			chrX	11758249
chrX:11775168	C C	CA CA	1	a0004c0006t0003 a0004c0006t0003	1	NA19006.hp1 NA19006.hp1	3_prime_UTR_variant	MODIFIER	c.89_90insA c.89_90insA	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	13/13	90		chrX	11775168
chrX:11775185	A A	G G	2	a0001c0001t0002 a0001c0001t0004 a0001c0001t0002 a0001c0001t0004	45	HG00323.hp2 HG00438.hp2 HG00558.hp2 others(42): Show HG00323.hp2 HG00438.hp2 HG00558.hp2 HG00609.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG01074.hp1 HG01099.hp1 HG01934.hp1 HG02027.hp1 HG02074.hp1 HG02083.hp1 HG02132.hp1 HG02165.hp1 HG02523.hp1 HG03491.hp2 HG04115.hp1 HG04228.hp1 NA18612.hp1 NA18906.hp1 NA18944.hp1 NA18946.hp2 NA18947.hp2 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18959.hp1 NA18965.hp1 NA18968.hp1 NA18974.hp1 NA18975.hp2 NA18984.hp1 NA18991.hp1 NA18992.hp2 NA19002.hp2 NA19003.hp1 NA19011.hp1 NA19054.hp1 NA19057.hp1 NA19077.hp1 NA19081.hp2 NA19084.hp2 NA19085.hp1 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.106A>G c.106A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	13/13	106		chrX	11775185
chrX:11775250	TC TC	T T	1	a0004c0006t0003 a0004c0006t0003	1	NA19006.hp1 NA19006.hp1	3_prime_UTR_variant	MODIFIER	c.174delC c.174delC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	13/13	174	INFO_REALIGN_3_PRIME	chrX	11775250
chrX:11775275	A A	AC AC	1	a0004c0006t0003 a0004c0006t0003	1	NA19006.hp1 NA19006.hp1	3_prime_UTR_variant	MODIFIER	c.197dupC c.197dupC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	13/13	198	INFO_REALIGN_3_PRIME	chrX	11775275
chrX:11775616	A A	AT AT	1	a0004c0006t0003 a0004c0006t0003	1	NA19006.hp1 NA19006.hp1	3_prime_UTR_variant	MODIFIER	c.542dupT c.542dupT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	13/13	543	INFO_REALIGN_3_PRIME	chrX	11775616

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:11758401	T T	TGGGGGAC others(8): Show TGGGGGACCCGGGACC	1	a0001c0001t0001g0017 a0001c0001t0001g0017	2	HG02717.hp1 NA19240.hp2 HG02717.hp1 NA19240.hp2	intron_variant	MODIFIER	c.102+42_102+56dupAC others(13): Show c.102+42_102+56dupACCCGGGACCGGGGG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	11758401
chrX:11758422	C C	CG CG	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.102+62dupG c.102+62dupG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	11758422
chrX:11758428	C C	CG CG	1	a0001c0001t0002g0093 a0001c0001t0002g0093	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.102+68dupG c.102+68dupG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	11758428
chrX:11758443	G G	T T	1	a0001c0001t0001g0092 a0001c0001t0001g0092	1	NA19082.hp1 NA19082.hp1	intron_variant	MODIFIER	c.102+78G>T c.102+78G>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11758443
chrX:11758465	G G	A A	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	HG03540.hp1 HG03540.hp1	intron_variant	MODIFIER	c.102+100G>A c.102+100G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11758465
chrX:11758742	C C	T T	1	a0001c0001t0001g0091 a0001c0001t0001g0091	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.102+377C>T c.102+377C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11758742
chrX:11758797	G G	T T	13	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 others(10): Show a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090	28	HG00735.hp2 HG02055.hp1 HG02280.hp2 others(25): Show HG00735.hp2 HG02055.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02723.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp2 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp2 HG03471.hp1 HG03516.hp1 HG03516.hp2 NA19030.hp1 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.102+432G>T c.102+432G>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11758797
chrX:11758798	C C	T T	13	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 others(10): Show a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090	28	HG00735.hp2 HG02055.hp1 HG02280.hp2 others(25): Show HG00735.hp2 HG02055.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02723.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp2 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp2 HG03471.hp1 HG03516.hp1 HG03516.hp2 NA19030.hp1 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.102+433C>T c.102+433C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11758798
chrX:11758816	C C	T T	1	a0001c0008t0001g0082 a0001c0008t0001g0082	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.102+451C>T c.102+451C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11758816
chrX:11759045	A A	C C	6	a0001c0001t0001g0004 a0001c0001t0001g0077 a0001c0001t0001g0078 others(3): Show a0001c0001t0001g0004 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081	14	HG01106.hp1 HG02257.hp2 HG02258.hp1 others(11): Show HG01106.hp1 HG02257.hp2 HG02258.hp1 HG02451.hp1 HG02615.hp1 HG02630.hp1 HG02886.hp2 HG02922.hp1 HG02970.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03453.hp2 NA18522.hp1	intron_variant	MODIFIER	c.102+680A>C c.102+680A>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11759045
chrX:11759172	G G	A A	3	a0001c0001t0001g0030 a0001c0008t0001g0082 a0003c0007t0001g0094 a0001c0001t0001g0030 a0001c0008t0001g0082 a0003c0007t0001g0094	3	HG01168.hp1 HG01169.hp1 HG02280.hp1 HG01168.hp1 HG01169.hp1 HG02280.hp1	intron_variant	MODIFIER	c.103-621G>A c.103-621G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11759172
chrX:11759197	C C	T T	1	a0001c0001t0001g0076 a0001c0001t0001g0076	1	NA18942.hp2 NA18942.hp2	intron_variant	MODIFIER	c.103-596C>T c.103-596C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11759197
chrX:11759282	G G	C C	1	a0001c0001t0001g0018 a0001c0001t0001g0018	2	NA18997.hp1 NA19089.hp1 NA18997.hp1 NA19089.hp1	intron_variant	MODIFIER	c.103-511G>C c.103-511G>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11759282
chrX:11759303	C C	T T	1	a0001c0001t0001g0026 a0001c0001t0001g0026	2	NA18955.hp1 NA18992.hp1 NA18955.hp1 NA18992.hp1	intron_variant	MODIFIER	c.103-490C>T c.103-490C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11759303
chrX:11759350	A A	AG AG	10	a0001c0001t0001g0007 a0001c0001t0001g0024 a0001c0001t0001g0025 others(7): Show a0001c0001t0001g0007 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0002g0007 a0001c0001t0002g0023 a0001c0001t0002g0072 a0001c0001t0002g0073	19	HG01192.hp1 HG01256.hp1 HG02056.hp1 others(16): Show HG01192.hp1 HG01256.hp1 HG02056.hp1 HG02074.hp1 HG02523.hp1 HG02523.hp2 HG02738.hp1 HG02895.hp1 HG02897.hp2 HG03831.hp1 HG04115.hp1 NA18612.hp1 NA18951.hp1 NA18985.hp1 NA19000.hp1 NA19007.hp1 NA19057.hp2 NA19083.hp1 NA19086.hp1	intron_variant	MODIFIER	c.103-433dupG c.103-433dupG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	11759350
chrX:11759350	A A	AGG AGG	2	a0001c0001t0001g0075 a0001c0008t0001g0082 a0001c0001t0001g0075 a0001c0008t0001g0082	2	HG02280.hp1 NA19075.hp1 HG02280.hp1 NA19075.hp1	intron_variant	MODIFIER	c.103-434_103-433dup others(2): Show c.103-434_103-433dupGG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	11759350
chrX:11759350	AG AG	A A	7	a0001c0001t0001g0013 a0001c0001t0001g0017 a0001c0001t0001g0034 others(4): Show a0001c0001t0001g0013 a0001c0001t0001g0017 a0001c0001t0001g0034 a0001c0001t0001g0083 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0002t0001g0019	12	HG01891.hp2 HG01934.hp1 HG02055.hp1 others(9): Show HG01891.hp2 HG01934.hp1 HG02055.hp1 HG02145.hp1 HG02293.hp2 HG02717.hp1 HG02818.hp1 HG03041.hp1 NA18950.hp1 NA19030.hp1 NA19043.hp1 NA19240.hp2	intron_variant	MODIFIER	c.103-433delG c.103-433delG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	11759350
chrX:11759355	G G	C C	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	NA20300.hp2 NA20300.hp2	intron_variant	MODIFIER	c.103-438G>C c.103-438G>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11759355
chrX:11759381	A A	T T	13	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 others(10): Show a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090	28	HG00735.hp2 HG02055.hp1 HG02280.hp2 others(25): Show HG00735.hp2 HG02055.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02723.hp2 HG02818.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp2 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp2 HG03471.hp1 HG03516.hp1 HG03516.hp2 NA19030.hp1 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.103-412A>T c.103-412A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11759381
chrX:11759629	C C	CA CA	1	a0001c0001t0001g0084 a0001c0001t0001g0084	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.103-163dupA c.103-163dupA	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	11759629
chrX:11759638	G G	GA GA	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	NA19003.hp2 NA19003.hp2	intron_variant	MODIFIER	c.103-148dupA c.103-148dupA	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	11759638
chrX:11759666	C C	T T	1	a0001c0001t0001g0081 a0001c0001t0001g0081	1	HG02451.hp1 HG02451.hp1	intron_variant	MODIFIER	c.103-127C>T c.103-127C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11759666
chrX:11759733	G G	C C	2	a0001c0001t0001g0014 a0001c0001t0001g0036 a0001c0001t0001g0014 a0001c0001t0001g0036	4	HG02040.hp1 NA18975.hp1 NA18993.hp2 others(1): Show HG02040.hp1 NA18975.hp1 NA18993.hp2 NA19068.hp1	intron_variant	MODIFIER	c.103-60G>C c.103-60G>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	1/12		chrX	11759733
chrX:11759900	T T	C C	1	a0001c0001t0001g0085 a0001c0001t0001g0085	1	NA21309.hp1 NA21309.hp1	intron_variant	MODIFIER	c.185+25T>C c.185+25T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	2/12		chrX	11759900
chrX:11760183	A A	C C	1	a0001c0008t0001g0082 a0001c0008t0001g0082	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.186-220A>C c.186-220A>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	2/12		chrX	11760183
chrX:11760352	G G	T T	31	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 others(28): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019 a0001c0002t0001g0022 a0001c0008t0001g0082 a0003c0007t0001g0094	71	HG00323.hp1 HG00735.hp2 HG01070.hp1 others(68): Show HG00323.hp1 HG00735.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01433.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03942.hp1 NA18906.hp2 NA18997.hp1 NA19030.hp1 NA19043.hp1 NA19089.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.186-51G>T c.186-51G>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	2/12		chrX	11760352
chrX:11760664	C C	CCTT CCTT	31	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 others(28): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019 a0001c0002t0001g0022 a0001c0008t0001g0082 a0003c0007t0001g0094	71	HG00323.hp1 HG00735.hp2 HG01070.hp1 others(68): Show HG00323.hp1 HG00735.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01433.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03942.hp1 NA18906.hp2 NA18997.hp1 NA19030.hp1 NA19043.hp1 NA19089.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.281+166_281+167ins others(3): Show c.281+166_281+167insCTT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	3/12		chrX	11760664
chrX:11760748	A A	T T	2	a0001c0001t0001g0012 a0001c0001t0001g0070 a0001c0001t0001g0012 a0001c0001t0001g0070	5	HG02109.hp2 HG02818.hp2 HG02922.hp2 others(2): Show HG02109.hp2 HG02818.hp2 HG02922.hp2 HG02976.hp2 HG03225.hp1	intron_variant	MODIFIER	c.282-89A>T c.282-89A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	3/12		chrX	11760748
chrX:11761160	T T	G G	3	a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088	3	HG02965.hp1 HG03209.hp1 NA21309.hp1 HG02965.hp1 HG03209.hp1 NA21309.hp1	intron_variant	MODIFIER	c.382+223T>G c.382+223T>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	4/12		chrX	11761160
chrX:11761399	T T	G G	1	a0001c0001t0001g0020 a0001c0001t0001g0020	2	HG02683.hp2 HG03710.hp1 HG02683.hp2 HG03710.hp1	intron_variant	MODIFIER	c.383-101T>G c.383-101T>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	4/12		chrX	11761399
chrX:11761419	A A	G G	31	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 others(28): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019 a0001c0002t0001g0022 a0001c0008t0001g0082 a0003c0007t0001g0094	71	HG00323.hp1 HG00735.hp2 HG01070.hp1 others(68): Show HG00323.hp1 HG00735.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01433.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03942.hp1 NA18906.hp2 NA18997.hp1 NA19030.hp1 NA19043.hp1 NA19089.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.383-81A>G c.383-81A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	4/12		chrX	11761419
chrX:11761436	C C	G G	2	a0001c0001t0001g0008 a0001c0001t0001g0027 a0001c0001t0001g0008 a0001c0001t0001g0027	9	HG02280.hp2 HG02559.hp1 HG02572.hp1 others(6): Show HG02280.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02970.hp2 HG03130.hp1 HG03516.hp2 NA20300.hp1	intron_variant	MODIFIER	c.383-64C>G c.383-64C>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	4/12		chrX	11761436
chrX:11761718	A A	T T	1	a0001c0001t0001g0036 a0001c0001t0001g0036	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.465+136A>T c.465+136A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	5/12		chrX	11761718
chrX:11761862	C C	G G	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.466-268C>G c.466-268C>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	5/12		chrX	11761862
chrX:11762309	G G	GT GT	1	a0001c0001t0002g0065 a0001c0001t0002g0065	1	NA19084.hp2 NA19084.hp2	intron_variant	MODIFIER	c.588+60dupT c.588+60dupT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	6/12	INFO_REALIGN_3_PRIME	chrX	11762309
chrX:11762317	T T	G G	1	a0001c0008t0001g0082 a0001c0008t0001g0082	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.588+65T>G c.588+65T>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	6/12		chrX	11762317
chrX:11762326	T T	C C	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	HG03831.hp2 HG03831.hp2	intron_variant	MODIFIER	c.588+74T>C c.588+74T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	6/12		chrX	11762326
chrX:11762351	C C	T T	1	a0001c0001t0002g0064 a0001c0001t0002g0064	1	NA19054.hp1 NA19054.hp1	intron_variant	MODIFIER	c.588+99C>T c.588+99C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	6/12		chrX	11762351
chrX:11762769	T T	G G	1	a0001c0001t0001g0038 a0001c0001t0001g0038	1	NA18946.hp1 NA18946.hp1	intron_variant	MODIFIER	c.589-68T>G c.589-68T>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	6/12		chrX	11762769
chrX:11763234	A A	G G	2	a0001c0001t0001g0063 a0001c0001t0002g0065 a0001c0001t0001g0063 a0001c0001t0002g0065	2	NA19012.hp1 NA19084.hp2 NA19012.hp1 NA19084.hp2	intron_variant	MODIFIER	c.749+237A>G c.749+237A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	7/12		chrX	11763234
chrX:11763288	A A	G G	1	a0001c0001t0001g0062 a0001c0001t0001g0062	1	HG03239.hp1 HG03239.hp1	intron_variant	MODIFIER	c.749+291A>G c.749+291A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	7/12		chrX	11763288
chrX:11763657	T T	C C	31	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 others(28): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019 a0001c0002t0001g0022 a0001c0008t0001g0082 a0003c0007t0001g0094	71	HG00323.hp1 HG00735.hp2 HG01070.hp1 others(68): Show HG00323.hp1 HG00735.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01433.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03942.hp1 NA18906.hp2 NA18997.hp1 NA19030.hp1 NA19043.hp1 NA19089.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.750-123T>C c.750-123T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	7/12		chrX	11763657
chrX:11763662	G G	A A	2	a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0089 a0001c0001t0001g0090	2	HG00735.hp2 HG03239.hp2 HG00735.hp2 HG03239.hp2	intron_variant	MODIFIER	c.750-118G>A c.750-118G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	7/12		chrX	11763662
chrX:11763710	A A	C C	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.750-70A>C c.750-70A>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	7/12		chrX	11763710
chrX:11764141	C C	T T	2	a0001c0003t0001g0060 a0001c0003t0001g0061 a0001c0003t0001g0060 a0001c0003t0001g0061	2	HG02897.hp1 HG06807.hp2 HG02897.hp1 HG06807.hp2	intron_variant	MODIFIER	c.908+203C>T c.908+203C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11764141
chrX:11764170	G G	A A	2	a0001c0001t0001g0063 a0001c0001t0002g0065 a0001c0001t0001g0063 a0001c0001t0002g0065	2	NA19012.hp1 NA19084.hp2 NA19012.hp1 NA19084.hp2	intron_variant	MODIFIER	c.908+232G>A c.908+232G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11764170
chrX:11764344	C C	T T	1	a0001c0008t0001g0082 a0001c0008t0001g0082	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.908+406C>T c.908+406C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11764344
chrX:11764558	C C	T T	1	a0001c0001t0001g0059 a0001c0001t0001g0059	1	NA19011.hp2 NA19011.hp2	intron_variant	MODIFIER	c.908+620C>T c.908+620C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11764558
chrX:11764718	CT CT	C C	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.909-744delT c.909-744delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12	INFO_REALIGN_3_PRIME	chrX	11764718
chrX:11764820	A A	G G	1	a0001c0008t0001g0082 a0001c0008t0001g0082	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.909-647A>G c.909-647A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11764820
chrX:11764821	T T	G G	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	NA19054.hp2 NA19054.hp2	intron_variant	MODIFIER	c.909-646T>G c.909-646T>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11764821
chrX:11764963	T T	C C	1	a0001c0008t0001g0082 a0001c0008t0001g0082	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.909-504T>C c.909-504T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11764963
chrX:11765047	T T	A A	17	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0012 others(14): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0012 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0077 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019	41	HG00323.hp1 HG01070.hp1 HG01070.hp2 others(38): Show HG00323.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01109.hp1 HG01168.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01433.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02486.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02922.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03225.hp1 HG03453.hp1 HG03540.hp1 HG03579.hp1 HG03942.hp1 NA18906.hp2 NA18997.hp1 NA19089.hp1 NA20300.hp2 NA20752.hp1	intron_variant	MODIFIER	c.909-420T>A c.909-420T>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11765047
chrX:11765107	G G	C C	1	a0001c0002t0001g0015 a0001c0002t0001g0015	3	HG01109.hp1 HG02109.hp1 NA18906.hp2 HG01109.hp1 HG02109.hp1 NA18906.hp2	intron_variant	MODIFIER	c.909-360G>C c.909-360G>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11765107
chrX:11765145	A A	C C	31	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 others(28): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0058 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019 a0001c0008t0001g0082 a0003c0007t0001g0094	70	HG00323.hp1 HG00735.hp2 HG01070.hp1 others(67): Show HG00323.hp1 HG00735.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01109.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01433.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03704.hp1 HG03942.hp1 NA18906.hp2 NA18997.hp1 NA19030.hp1 NA19043.hp1 NA19089.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.909-322A>C c.909-322A>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11765145
chrX:11765172	G G	C C	9	a0001c0001t0001g0010 a0001c0001t0001g0028 a0001c0001t0001g0030 others(6): Show a0001c0001t0001g0010 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0058 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0008t0001g0082 a0003c0007t0001g0094	14	HG00735.hp2 HG01168.hp1 HG01169.hp1 others(11): Show HG00735.hp2 HG01168.hp1 HG01169.hp1 HG02280.hp1 HG02723.hp2 HG02895.hp1 HG02897.hp2 HG03195.hp2 HG03239.hp2 HG03516.hp1 HG03704.hp1 NA19030.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.909-295G>C c.909-295G>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11765172
chrX:11765281	A A	G G	11	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 others(8): Show a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0058 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0001g0090 a0003c0007t0001g0094	26	HG00735.hp2 HG01168.hp1 HG01169.hp1 others(23): Show HG00735.hp2 HG01168.hp1 HG01169.hp1 HG02055.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02723.hp2 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG02970.hp2 HG03130.hp1 HG03195.hp2 HG03239.hp2 HG03516.hp1 HG03516.hp2 HG03704.hp1 NA19030.hp1 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.909-186A>G c.909-186A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11765281
chrX:11765284	T T	C C	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG02523.hp2 HG02523.hp2	intron_variant	MODIFIER	c.909-183T>C c.909-183T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11765284
chrX:11765383	G G	C C	16	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0012 others(13): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0012 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019	40	HG00323.hp1 HG01070.hp1 HG01070.hp2 others(37): Show HG00323.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01109.hp1 HG01168.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01433.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02486.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp2 HG02922.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03225.hp1 HG03453.hp1 HG03540.hp1 HG03579.hp1 HG03942.hp1 NA18906.hp2 NA18997.hp1 NA19089.hp1 NA20300.hp2 NA20752.hp1	intron_variant	MODIFIER	c.909-84G>C c.909-84G>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11765383
chrX:11765447	A A	T T	1	a0001c0003t0001g0057 a0001c0003t0001g0057	1	HG03195.hp1 HG03195.hp1	intron_variant	MODIFIER	c.909-20A>T c.909-20A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	8/12		chrX	11765447
chrX:11765889	A A	G G	2	a0001c0003t0001g0060 a0001c0003t0001g0061 a0001c0003t0001g0060 a0001c0003t0001g0061	2	HG02897.hp1 HG06807.hp2 HG02897.hp1 HG06807.hp2	intron_variant	MODIFIER	c.1171+160A>G c.1171+160A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11765889
chrX:11765918	C C	T T	1	a0001c0001t0002g0056 a0001c0001t0002g0056	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.1171+189C>T c.1171+189C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11765918
chrX:11766018	A A	G G	1	a0001c0001t0001g0017 a0001c0001t0001g0017	2	HG02717.hp1 NA19240.hp2 HG02717.hp1 NA19240.hp2	intron_variant	MODIFIER	c.1171+289A>G c.1171+289A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766018
chrX:11766149	A A	T T	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.1171+420A>T c.1171+420A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766149
chrX:11766154	CA CA	C C	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1171+428delA c.1171+428delA	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11766154
chrX:11766202	GC GC	G G	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1171+476delC c.1171+476delC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11766202
chrX:11766227	T T	G G	12	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 others(9): Show a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0058 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0008t0001g0082 a0003c0007t0001g0094	27	HG00735.hp2 HG01168.hp1 HG01169.hp1 others(24): Show HG00735.hp2 HG01168.hp1 HG01169.hp1 HG02055.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02723.hp2 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG02970.hp2 HG03130.hp1 HG03195.hp2 HG03239.hp2 HG03516.hp1 HG03516.hp2 HG03704.hp1 NA19030.hp1 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.1171+498T>G c.1171+498T>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766227
chrX:11766287	CT CT	C C	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1171+561delT c.1171+561delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11766287
chrX:11766376	C C	CA CA	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1171+652dupA c.1171+652dupA	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11766376
chrX:11766516	A A	T T	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG02273.hp1 HG02273.hp1	intron_variant	MODIFIER	c.1171+787A>T c.1171+787A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766516
chrX:11766566	T T	C C	1	a0001c0008t0001g0082 a0001c0008t0001g0082	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.1171+837T>C c.1171+837T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766566
chrX:11766583	AC AC	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1171+857delC c.1171+857delC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11766583
chrX:11766637	G G	C C	1	a0001c0001t0001g0062 a0001c0001t0001g0062	1	HG03239.hp1 HG03239.hp1	intron_variant	MODIFIER	c.1171+908G>C c.1171+908G>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766637
chrX:11766669	T T	C C	1	a0001c0008t0001g0082 a0001c0008t0001g0082	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.1171+940T>C c.1171+940T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766669
chrX:11766676	G G	C C	1	a0001c0001t0001g0040 a0001c0001t0001g0040	1	HG00438.hp1 HG00438.hp1	intron_variant	MODIFIER	c.1171+947G>C c.1171+947G>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766676
chrX:11766680	G G	A A	3	a0001c0001t0001g0058 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0058 a0001c0001t0001g0089 a0001c0001t0001g0090	3	HG00735.hp2 HG03239.hp2 HG03704.hp1 HG00735.hp2 HG03239.hp2 HG03704.hp1	intron_variant	MODIFIER	c.1171+951G>A c.1171+951G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766680
chrX:11766733	GA GA	G G	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1171+1007delA c.1171+1007delA	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11766733
chrX:11766745	C C	T T	1	a0001c0001t0001g0070 a0001c0001t0001g0070	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1171+1016C>T c.1171+1016C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766745
chrX:11766787	G G	T T	2	a0001c0001t0001g0054 a0001c0001t0001g0076 a0001c0001t0001g0054 a0001c0001t0001g0076	2	NA18942.hp2 NA19070.hp1 NA18942.hp2 NA19070.hp1	intron_variant	MODIFIER	c.1171+1058G>T c.1171+1058G>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766787
chrX:11766836	A A	G G	2	a0001c0001t0001g0034 a0001c0002t0001g0019 a0001c0001t0001g0034 a0001c0002t0001g0019	3	HG01891.hp2 HG02145.hp1 HG03041.hp1 HG01891.hp2 HG02145.hp1 HG03041.hp1	intron_variant	MODIFIER	c.1171+1107A>G c.1171+1107A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766836
chrX:11766901	G G	A A	1	a0001c0003t0001g0060 a0001c0003t0001g0060	1	HG02897.hp1 HG02897.hp1	intron_variant	MODIFIER	c.1171+1172G>A c.1171+1172G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11766901
chrX:11766904	T T	TC TC	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1171+1179dupC c.1171+1179dupC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11766904
chrX:11767314	A A	T T	9	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 others(6): Show a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0058 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0001g0090	24	HG00735.hp2 HG02055.hp1 HG02280.hp2 others(21): Show HG00735.hp2 HG02055.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02723.hp2 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG02970.hp2 HG03130.hp1 HG03195.hp2 HG03239.hp2 HG03516.hp1 HG03516.hp2 HG03704.hp1 NA19030.hp1 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.1172-1259A>T c.1172-1259A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11767314
chrX:11767414	G G	GC GC	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-1157dupC c.1172-1157dupC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11767414
chrX:11767536	TG TG	T T	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-1035delG c.1172-1035delG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11767536
chrX:11767719	AT AT	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-850delT c.1172-850delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11767719
chrX:11767759	A A	G G	5	a0001c0001t0001g0004 a0001c0001t0001g0077 a0001c0001t0001g0081 others(2): Show a0001c0001t0001g0004 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0086	13	HG01106.hp1 HG02257.hp2 HG02258.hp1 others(10): Show HG01106.hp1 HG02257.hp2 HG02258.hp1 HG02451.hp1 HG02615.hp1 HG02630.hp1 HG02886.hp1 HG02886.hp2 HG02970.hp1 HG03041.hp2 HG03139.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.1172-814A>G c.1172-814A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11767759
chrX:11767784	TC TC	T T	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-785delC c.1172-785delC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11767784
chrX:11767801	A A	AG AG	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-772_1172-771i others(3): Show c.1172-772_1172-771insG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11767801
chrX:11767805	A A	G G	18	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0012 others(15): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0012 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019 a0001c0002t0001g0022	43	HG00323.hp1 HG01070.hp1 HG01070.hp2 others(40): Show HG00323.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp2 HG01169.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02486.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp2 HG02922.hp2 HG02965.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03225.hp1 HG03453.hp1 HG03540.hp1 HG03579.hp1 HG03942.hp1 NA18906.hp2 NA18997.hp1 NA19089.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1	intron_variant	MODIFIER	c.1172-768A>G c.1172-768A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11767805
chrX:11767805	AT AT	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-765delT c.1172-765delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11767805
chrX:11767817	A A	T T	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-756A>T c.1172-756A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11767817
chrX:11767819	A A	AG AG	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-754_1172-753i others(3): Show c.1172-754_1172-753insG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11767819
chrX:11767826	A A	AG AG	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-746dupG c.1172-746dupG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11767826
chrX:11767918	AT AT	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-650delT c.1172-650delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11767918
chrX:11767967	CT CT	C C	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-601delT c.1172-601delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11767967
chrX:11767994	AT AT	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-573delT c.1172-573delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11767994
chrX:11768150	C C	T T	2	a0001c0001t0001g0021 a0001c0001t0001g0024 a0001c0001t0001g0021 a0001c0001t0001g0024	4	HG01175.hp2 HG01192.hp1 HG01346.hp2 others(1): Show HG01175.hp2 HG01192.hp1 HG01346.hp2 HG03831.hp1	intron_variant	MODIFIER	c.1172-423C>T c.1172-423C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11768150
chrX:11768186	C C	A A	10	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 others(7): Show a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0058 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0008t0001g0082	25	HG00735.hp2 HG02055.hp1 HG02280.hp1 others(22): Show HG00735.hp2 HG02055.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02723.hp2 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG02970.hp2 HG03130.hp1 HG03195.hp2 HG03239.hp2 HG03516.hp1 HG03516.hp2 HG03704.hp1 NA19030.hp1 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.1172-387C>A c.1172-387C>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11768186
chrX:11768369	C C	T T	1	a0001c0001t0001g0090 a0001c0001t0001g0090	1	HG00735.hp2 HG00735.hp2	intron_variant	MODIFIER	c.1172-204C>T c.1172-204C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12		chrX	11768369
chrX:11768489	AT AT	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1172-81delT c.1172-81delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11768489
chrX:11768567	TG TG	T T	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	splice_region_variant&intron_variant	LOW	c.1172-4delG c.1172-4delG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	11768567
chrX:11768720	T T	C C	96	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(93): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0042 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0002g0001 a0001c0001t0002g0002 a0001c0001t0002g0007 a0001c0001t0002g0023 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0041 a0001c0001t0002g0043 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0056 a0001c0001t0002g0064 a0001c0001t0002g0065 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0093 a0001c0001t0004g0002 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019 a0001c0002t0001g0022 a0001c0003t0001g0011 a0001c0003t0001g0057 a0001c0003t0001g0060 a0001c0003t0001g0061 a0001c0005t0001g0001 a0001c0008t0001g0082 a0002c0004t0001g0001 a0003c0007t0001g0094 a0004c0006t0003g0051	285	HG00099.hp1 HG00280.hp1 HG00323.hp1 others(282): Show HG00099.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1281+38T>C c.1281+38T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11768720
chrX:11769311	AG AG	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1281+632delG c.1281+632delG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11769311
chrX:11769370	G G	A A	1	a0001c0001t0001g0008 a0001c0001t0001g0008	7	HG02280.hp2 HG02559.hp1 HG02615.hp2 others(4): Show HG02280.hp2 HG02559.hp1 HG02615.hp2 HG02723.hp1 HG03130.hp1 HG03516.hp2 NA20300.hp1	intron_variant	MODIFIER	c.1281+688G>A c.1281+688G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11769370
chrX:11769542	C C	CT CT	1	a0004c0006t0003g0051 a0004c0006t0003g0051	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1281+867dupT c.1281+867dupT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11769542
chrX:11769571	AG AG	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1281+892delG c.1281+892delG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11769571
chrX:11769600	A A	T T	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	HG02148.hp1 HG02148.hp1	intron_variant	MODIFIER	c.1281+918A>T c.1281+918A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11769600
chrX:11769621	AG AG	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1281+942delG c.1281+942delG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11769621
chrX:11769666	G G	GA GA	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1281+984_1281+985i others(3): Show c.1281+984_1281+985insA	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11769666
chrX:11769799	T T	A A	1	a0001c0001t0002g0041 a0001c0001t0002g0041	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.1281+1117T>A c.1281+1117T>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11769799
chrX:11769818	C C	T T	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02155.hp1 HG02155.hp1	intron_variant	MODIFIER	c.1281+1136C>T c.1281+1136C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11769818
chrX:11769827	A A	G G	1	a0001c0001t0001g0069 a0001c0001t0001g0069	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.1281+1145A>G c.1281+1145A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11769827
chrX:11769850	C C	G G	7	a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0027 others(4): Show a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0058 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0001g0090	17	HG00735.hp2 HG02055.hp1 HG02280.hp2 others(14): Show HG00735.hp2 HG02055.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02818.hp1 HG02970.hp2 HG03130.hp1 HG03239.hp2 HG03516.hp2 HG03704.hp1 NA19030.hp1 NA19043.hp1 NA20300.hp1	intron_variant	MODIFIER	c.1281+1168C>G c.1281+1168C>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11769850
chrX:11769876	G G	C C	5	a0001c0001t0001g0006 a0001c0001t0001g0016 a0001c0001t0001g0018 others(2): Show a0001c0001t0001g0006 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0034 a0001c0001t0001g0069	15	HG00323.hp1 HG01070.hp1 HG01168.hp2 others(12): Show HG00323.hp1 HG01070.hp1 HG01168.hp2 HG01255.hp1 HG01257.hp2 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG02145.hp1 HG02630.hp2 HG02647.hp1 HG02735.hp1 NA18997.hp1 NA19089.hp1 NA20752.hp1	intron_variant	MODIFIER	c.1281+1194G>C c.1281+1194G>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11769876
chrX:11769884	G G	GC GC	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1281+1203dupC c.1281+1203dupC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11769884
chrX:11769927	TG TG	T T	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1281+1248delG c.1281+1248delG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11769927
chrX:11769959	C C	T T	9	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 others(6): Show a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0058 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0001g0090	24	HG00735.hp2 HG02055.hp1 HG02280.hp2 others(21): Show HG00735.hp2 HG02055.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02723.hp2 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG02970.hp2 HG03130.hp1 HG03195.hp2 HG03239.hp2 HG03516.hp1 HG03516.hp2 HG03704.hp1 NA19030.hp1 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.1281+1277C>T c.1281+1277C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11769959
chrX:11770069	AG AG	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1281+1391delG c.1281+1391delG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11770069
chrX:11770090	GC GC	G G	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1281+1413delC c.1281+1413delC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11770090
chrX:11770139	T T	G G	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	HG01928.hp1 HG01928.hp1	intron_variant	MODIFIER	c.1281+1457T>G c.1281+1457T>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770139
chrX:11770184	A A	C C	2	a0001c0001t0001g0006 a0001c0001t0001g0034 a0001c0001t0001g0006 a0001c0001t0001g0034	9	HG00323.hp1 HG01070.hp1 HG01168.hp2 others(6): Show HG00323.hp1 HG01070.hp1 HG01168.hp2 HG01255.hp1 HG01257.hp2 HG01884.hp1 HG02145.hp1 HG02630.hp2 HG02647.hp1	intron_variant	MODIFIER	c.1281+1502A>C c.1281+1502A>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770184
chrX:11770196	T T	G G	9	a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 others(6): Show a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0058 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0001g0090	24	HG00735.hp2 HG02055.hp1 HG02280.hp2 others(21): Show HG00735.hp2 HG02055.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02723.hp2 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG02970.hp2 HG03130.hp1 HG03195.hp2 HG03239.hp2 HG03516.hp1 HG03516.hp2 HG03704.hp1 NA19030.hp1 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.1281+1514T>G c.1281+1514T>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770196
chrX:11770219	T T	C C	53	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 others(50): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0058 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0002g0002 a0001c0001t0002g0023 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0041 a0001c0001t0002g0043 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0056 a0001c0001t0002g0064 a0001c0001t0002g0072 a0001c0001t0002g0073 a0001c0001t0002g0093 a0001c0001t0004g0002 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019 a0001c0002t0001g0022 a0001c0008t0001g0082 a0003c0007t0001g0094	127	HG00323.hp1 HG00323.hp2 HG00438.hp2 others(124): Show HG00323.hp1 HG00323.hp2 HG00438.hp2 HG00609.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG01934.hp1 HG02027.hp1 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02451.hp1 HG02486.hp1 HG02523.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03491.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03704.hp1 HG03942.hp1 HG04115.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18946.hp2 NA18947.hp2 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18959.hp1 NA18965.hp1 NA18968.hp1 NA18974.hp1 NA18975.hp2 NA18984.hp1 NA18991.hp1 NA18992.hp2 NA18997.hp1 NA19002.hp2 NA19003.hp1 NA19011.hp1 NA19030.hp1 NA19043.hp1 NA19054.hp1 NA19057.hp1 NA19077.hp1 NA19081.hp2 NA19085.hp1 NA19089.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.1281+1537T>C c.1281+1537T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770219
chrX:11770270	G G	GT GT	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1281+1590dupT c.1281+1590dupT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11770270
chrX:11770295	T T	TA TA	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA19077.hp2 NA19077.hp2	intron_variant	MODIFIER	c.1281+1614dupA c.1281+1614dupA	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11770295
chrX:11770389	AG AG	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1281+1711delG c.1281+1711delG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11770389
chrX:11770428	C C	T T	7	a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0027 others(4): Show a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0058 a0001c0001t0001g0083 a0001c0001t0001g0089 a0001c0001t0001g0090	17	HG00735.hp2 HG02055.hp1 HG02280.hp2 others(14): Show HG00735.hp2 HG02055.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02723.hp1 HG02818.hp1 HG02970.hp2 HG03130.hp1 HG03239.hp2 HG03516.hp2 HG03704.hp1 NA19030.hp1 NA19043.hp1 NA20300.hp1	intron_variant	MODIFIER	c.1282-1728C>T c.1282-1728C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770428
chrX:11770510	TGG TGG	T T	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1282-1643_1282-164 others(6): Show c.1282-1643_1282-1642delGG	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11770510
chrX:11770553	G G	A A	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1282-1603G>A c.1282-1603G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770553
chrX:11770554	A A	T T	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1282-1602A>T c.1282-1602A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770554
chrX:11770556	T T	C C	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1282-1600T>C c.1282-1600T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770556
chrX:11770586	GT GT	G G	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1282-1564delT c.1282-1564delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11770586
chrX:11770619	A A	G G	2	a0001c0001t0001g0010 a0001c0001t0001g0028 a0001c0001t0001g0010 a0001c0001t0001g0028	7	HG02723.hp2 HG02895.hp1 HG02897.hp2 others(4): Show HG02723.hp2 HG02895.hp1 HG02897.hp2 HG03195.hp2 HG03516.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1282-1537A>G c.1282-1537A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770619
chrX:11770641	G G	T T	1	a0001c0001t0002g0033 a0001c0001t0002g0033	1	HG01934.hp1 HG01934.hp1	intron_variant	MODIFIER	c.1282-1515G>T c.1282-1515G>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770641
chrX:11770667	TA TA	T T	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1282-1486delA c.1282-1486delA	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11770667
chrX:11770708	TC TC	T T	1	a0003c0007t0001g0094 a0003c0007t0001g0094	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.1282-1443delC c.1282-1443delC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11770708
chrX:11770962	C C	T T	18	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0012 others(15): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0012 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0034 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0002t0001g0003 a0001c0002t0001g0015 a0001c0002t0001g0019 a0001c0002t0001g0022 a0001c0008t0001g0082 a0003c0007t0001g0094	43	HG00323.hp1 HG01070.hp1 HG01070.hp2 others(40): Show HG00323.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01109.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01255.hp1 HG01256.hp1 HG01257.hp2 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02280.hp1 HG02486.hp1 HG02559.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02818.hp2 HG02922.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03225.hp1 HG03540.hp1 HG03579.hp1 HG03942.hp1 NA18906.hp2 NA18997.hp1 NA19089.hp1 NA20300.hp2 NA20752.hp1	intron_variant	MODIFIER	c.1282-1194C>T c.1282-1194C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11770962
chrX:11771179	G G	C C	1	a0001c0001t0001g0017 a0001c0001t0001g0017	2	HG02717.hp1 NA19240.hp2 HG02717.hp1 NA19240.hp2	intron_variant	MODIFIER	c.1282-977G>C c.1282-977G>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11771179
chrX:11771351	C C	T T	4	a0001c0003t0001g0011 a0001c0003t0001g0057 a0001c0003t0001g0060 others(1): Show a0001c0003t0001g0011 a0001c0003t0001g0057 a0001c0003t0001g0060 a0001c0003t0001g0061	7	HG01891.hp1 HG02897.hp1 HG03195.hp1 others(4): Show HG01891.hp1 HG02897.hp1 HG03195.hp1 HG03486.hp2 HG03540.hp2 HG06807.hp1 HG06807.hp2	intron_variant	MODIFIER	c.1282-805C>T c.1282-805C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11771351
chrX:11771405	GT GT	G G	1	a0004c0006t0003g0051 a0004c0006t0003g0051	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1282-748delT c.1282-748delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	11771405
chrX:11771724	C C	T T	14	a0001c0001t0002g0002 a0001c0001t0002g0023 a0001c0001t0002g0032 others(11): Show a0001c0001t0002g0002 a0001c0001t0002g0023 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0041 a0001c0001t0002g0043 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0056 a0001c0001t0002g0064 a0001c0001t0002g0065 a0001c0001t0002g0073 a0001c0001t0002g0093 a0001c0001t0004g0002	40	HG00323.hp2 HG00438.hp2 HG00609.hp1 others(37): Show HG00323.hp2 HG00438.hp2 HG00609.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG01074.hp1 HG01099.hp1 HG01934.hp1 HG02027.hp1 HG02132.hp1 HG02523.hp1 HG03491.hp2 HG04228.hp1 NA18612.hp1 NA18906.hp1 NA18944.hp1 NA18946.hp2 NA18947.hp2 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18959.hp1 NA18965.hp1 NA18968.hp1 NA18974.hp1 NA18975.hp2 NA18984.hp1 NA18991.hp1 NA18992.hp2 NA19002.hp2 NA19003.hp1 NA19011.hp1 NA19054.hp1 NA19057.hp1 NA19077.hp1 NA19081.hp2 NA19084.hp2 NA19085.hp1 NA20129.hp1	intron_variant	MODIFIER	c.1282-432C>T c.1282-432C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11771724
chrX:11771725	G G	A A	1	a0001c0001t0001g0017 a0001c0001t0001g0017	2	HG02717.hp1 NA19240.hp2 HG02717.hp1 NA19240.hp2	intron_variant	MODIFIER	c.1282-431G>A c.1282-431G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11771725
chrX:11771799	T T	G G	1	a0001c0001t0001g0047 a0001c0001t0001g0047	1	HG02004.hp1 HG02004.hp1	intron_variant	MODIFIER	c.1282-357T>G c.1282-357T>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11771799
chrX:11771807	C C	T T	1	a0001c0001t0001g0062 a0001c0001t0001g0062	1	HG03239.hp1 HG03239.hp1	intron_variant	MODIFIER	c.1282-349C>T c.1282-349C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11771807
chrX:11771823	C C	T T	3	a0001c0001t0001g0030 a0001c0008t0001g0082 a0003c0007t0001g0094 a0001c0001t0001g0030 a0001c0008t0001g0082 a0003c0007t0001g0094	3	HG01168.hp1 HG01169.hp1 HG02280.hp1 HG01168.hp1 HG01169.hp1 HG02280.hp1	intron_variant	MODIFIER	c.1282-333C>T c.1282-333C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11771823
chrX:11771833	G G	A A	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	NA19000.hp1 NA19000.hp1	intron_variant	MODIFIER	c.1282-323G>A c.1282-323G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11771833
chrX:11771873	G G	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.1282-283G>A c.1282-283G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	10/12		chrX	11771873
chrX:11772618	C C	T T	1	a0001c0001t0002g0045 a0001c0001t0002g0045	1	NA20129.hp1 NA20129.hp1	splice_region_variant&intron_variant	LOW	c.1382-3C>T c.1382-3C>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	11/12		chrX	11772618
chrX:11772718	T T	C C	2	a0001c0001t0001g0010 a0001c0001t0001g0028 a0001c0001t0001g0010 a0001c0001t0001g0028	7	HG02723.hp2 HG02895.hp1 HG02897.hp2 others(4): Show HG02723.hp2 HG02895.hp1 HG02897.hp2 HG03195.hp2 HG03516.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1466+13T>C c.1466+13T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11772718
chrX:11772865	G G	GT GT	1	a0001c0001t0002g0056 a0001c0001t0002g0056	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.1466+167dupT c.1466+167dupT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12	INFO_REALIGN_3_PRIME	chrX	11772865
chrX:11773124	G G	A A	3	a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088	3	HG02965.hp1 HG03209.hp1 NA21309.hp1 HG02965.hp1 HG03209.hp1 NA21309.hp1	intron_variant	MODIFIER	c.1466+419G>A c.1466+419G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11773124
chrX:11773394	TTAAGGAG others(6): Show TTAAGGAGTATCTC	T T	1	a0004c0006t0003g0051 a0004c0006t0003g0051	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1466+691_1466+703d others(15): Show c.1466+691_1466+703delAAGGAGTATCTCT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12	INFO_REALIGN_3_PRIME	chrX	11773394
chrX:11773438	T T	C C	2	a0001c0001t0002g0043 a0001c0001t0002g0073 a0001c0001t0002g0043 a0001c0001t0002g0073	2	NA18951.hp1 NA19081.hp2 NA18951.hp1 NA19081.hp2	intron_variant	MODIFIER	c.1466+733T>C c.1466+733T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11773438
chrX:11773764	G G	A A	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG00099.hp2 HG00099.hp2	intron_variant	MODIFIER	c.1466+1059G>A c.1466+1059G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11773764
chrX:11773877	A A	T T	1	a0001c0001t0001g0048 a0001c0001t0001g0048	1	HG02080.hp1 HG02080.hp1	intron_variant	MODIFIER	c.1467-1103A>T c.1467-1103A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11773877
chrX:11773883	GA GA	G G	2	a0001c0001t0001g0030 a0003c0007t0001g0094 a0001c0001t0001g0030 a0003c0007t0001g0094	2	HG01168.hp1 HG01169.hp1 HG01168.hp1 HG01169.hp1	intron_variant	MODIFIER	c.1467-1092delA c.1467-1092delA	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12	INFO_REALIGN_3_PRIME	chrX	11773883
chrX:11774106	A A	T T	1	a0001c0001t0001g0080 a0001c0001t0001g0080	1	HG02922.hp1 HG02922.hp1	intron_variant	MODIFIER	c.1467-874A>T c.1467-874A>T	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11774106
chrX:11774250	T T	C C	2	a0001c0001t0001g0010 a0001c0001t0001g0028 a0001c0001t0001g0010 a0001c0001t0001g0028	7	HG02723.hp2 HG02895.hp1 HG02897.hp2 others(4): Show HG02723.hp2 HG02895.hp1 HG02897.hp2 HG03195.hp2 HG03516.hp1 NA20129.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1467-730T>C c.1467-730T>C	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11774250
chrX:11774330	T T	G G	1	a0001c0001t0001g0078 a0001c0001t0001g0078	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.1467-650T>G c.1467-650T>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11774330
chrX:11774438	G G	A A	1	a0001c0001t0002g0044 a0001c0001t0002g0044	1	HG03491.hp2 HG03491.hp2	intron_variant	MODIFIER	c.1467-542G>A c.1467-542G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11774438
chrX:11774596	G G	A A	2	a0001c0001t0001g0009 a0001c0001t0001g0039 a0001c0001t0001g0009 a0001c0001t0001g0039	7	NA18942.hp1 NA18947.hp1 NA18970.hp1 others(4): Show NA18942.hp1 NA18947.hp1 NA18970.hp1 NA18997.hp2 NA19054.hp2 NA19055.hp1 NA19066.hp1	intron_variant	MODIFIER	c.1467-384G>A c.1467-384G>A	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11774596
chrX:11774861	A A	AT AT	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	NA20300.hp2 NA20300.hp2	intron_variant	MODIFIER	c.1467-112dupT c.1467-112dupT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12	INFO_REALIGN_3_PRIME	chrX	11774861
chrX:11774861	AT AT	A A	1	a0004c0006t0003g0051 a0004c0006t0003g0051	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1467-112delT c.1467-112delT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12	INFO_REALIGN_3_PRIME	chrX	11774861
chrX:11774905	G G	GT GT	1	a0004c0006t0003g0051 a0004c0006t0003g0051	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.1467-73dupT c.1467-73dupT	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12	INFO_REALIGN_3_PRIME	chrX	11774905
chrX:11774916	A A	G G	1	a0001c0001t0001g0013 a0001c0001t0001g0013	4	HG02055.hp1 HG02293.hp2 HG02818.hp1 others(1): Show HG02055.hp1 HG02293.hp2 HG02818.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1467-64A>G c.1467-64A>G	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12		chrX	11774916
chrX:11774975	TC TC	T T	1	a0004c0006t0003g0051 a0004c0006t0003g0051	1	NA19006.hp1 NA19006.hp1	splice_region_variant&intron_variant	LOW	c.1467-3delC c.1467-3delC	MSL3	ENSG00000005302.19	transcript	ENST00000312196.10	protein_coding	12/12	INFO_REALIGN_3_PRIME	chrX	11774975

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🧬 JoGo Online Haplotype Explorer MSL3_chrX_11753237_11780772

JoGo Local Haplotype Explorer (on iGV) MSL3_chrX_11753237_11780772

🧬 Gene Summary

Translation Multiple Alignment View

LD View

AAmino acid (protein) Level Haplotype Info (Total: 4)

CCoding Level Haplotype Info (Total: 8)

TTranscript Level Haplotype Info (Total: 4)

GGenebody Level Haplotype Info (Total: 94)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 8)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 10)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 100)

Haplotype Details by Sample (Haploid Level) (Total: 297)

AAmino acid (protein) Level Variants (Effect to Protein Coding Variants) (Total: 3)

CCoding Level Variants (Synonymous Mutations) (Total: 4)

TTranscript Level Variants (5'UTR+3'UTR) (Total: 6)

GGenebody Level Haplotype Variants (Intron) (Total: 167)

Genealogies

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Annotation (Repeats)

Annotation (SNP Array)