Joint Open Genome and Omics Platform (JoGo)

Search by Gene

geneid	4488
ensemblid	ENSG00000120149.9
hgncid	7392
symbol	MSX2
name	msh homeobox 2
refseq_nuc	NM_002449.5
refseq_prot	NP_002440.2
ensembl_nuc	ENST00000239243.7
ensembl_prot	ENSP00000239243.5
mane_status	MANE Select
chr	chr5
start	174724582
end	174730896
strand	+
ver	v1.2
region	chr5:174724582-174730896
region5000	chr5:174719582-174735896
regionname0	MSX2_chr5_174724582_174730896
regionname5000	MSX2_chr5_174719582_174735896

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aa
a0001	0/1	267	271	34	54	136	11	35	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002	1/0	267	82	63	8	6	1	3	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0003	0/0	267	2	0	2	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0004	0/0	267	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq
c0001	0/1	804	270	34	54	135	11	35	MSX2_chr5_174719582_174735896	MSX2	copy fasta
c0002	1/0	804	82	63	8	6	1	3	MSX2_chr5_174719582_174735896	MSX2	copy fasta
c0003	0/0	804	2	0	2	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
c0004	0/0	804	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
c0005	0/0	804	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta

thapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq
t0001	0/1	1393	247	39	51	115	10	31	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0002	0/0	1393	40	29	6	4	1	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0003	0/0	1394	25	1	1	20	0	3	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0004	0/0	1393	18	14	1	0	0	3	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0005	0/0	1393	9	9	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0006	1/0	1392	3	1	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0007	0/0	1393	3	3	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0008	0/0	1393	3	0	2	0	1	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0009	0/0	1393	2	0	0	2	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0010	0/0	1393	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0011	0/0	1393	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0012	0/0	1393	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0013	0/0	1393	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0014	0/0	1394	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2	copy fasta
t0015	0/0	1393	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
g0001	0/1	94	8	23	45	5	12	MSX2_chr5_174719582_174735896	MSX2
g0002	0/0	55	9	11	22	4	9	MSX2_chr5_174719582_174735896	MSX2
g0003	0/0	25	20	4	0	1	0	MSX2_chr5_174719582_174735896	MSX2
g0004	0/0	20	1	1	15	0	3	MSX2_chr5_174719582_174735896	MSX2
g0005	0/0	12	1	2	6	1	2	MSX2_chr5_174719582_174735896	MSX2
g0006	0/0	8	7	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0007	0/0	8	7	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0008	0/0	7	1	6	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0009	0/0	7	0	0	7	0	0	MSX2_chr5_174719582_174735896	MSX2
g0010	0/0	5	0	0	5	0	0	MSX2_chr5_174719582_174735896	MSX2
g0011	0/0	5	0	0	5	0	0	MSX2_chr5_174719582_174735896	MSX2
g0012	0/0	4	0	0	4	0	0	MSX2_chr5_174719582_174735896	MSX2
g0013	0/0	4	0	0	4	0	0	MSX2_chr5_174719582_174735896	MSX2
g0014	0/0	4	3	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
g0015	0/0	4	4	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0016	0/0	3	3	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0017	0/0	3	2	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0018	0/0	3	0	2	0	1	0	MSX2_chr5_174719582_174735896	MSX2
g0019	0/0	3	1	2	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0020	0/0	3	0	0	3	0	0	MSX2_chr5_174719582_174735896	MSX2
g0021	0/0	2	0	0	1	0	1	MSX2_chr5_174719582_174735896	MSX2
g0022	0/0	2	0	0	0	0	2	MSX2_chr5_174719582_174735896	MSX2
g0023	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0024	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0025	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0026	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0027	0/0	2	0	2	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0028	0/0	2	0	1	0	0	1	MSX2_chr5_174719582_174735896	MSX2
g0029	0/0	2	0	2	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0030	0/0	2	0	0	2	0	0	MSX2_chr5_174719582_174735896	MSX2
g0031	0/0	2	0	0	2	0	0	MSX2_chr5_174719582_174735896	MSX2
g0032	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0033	0/0	2	0	0	2	0	0	MSX2_chr5_174719582_174735896	MSX2
g0034	1/0	2	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0035	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0036	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0037	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0038	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0039	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0040	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0041	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0042	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0043	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0044	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0045	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0046	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0047	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0048	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0049	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
g0050	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0051	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0052	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0053	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0054	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0055	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0056	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
g0057	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0058	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
g0059	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0060	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
g0061	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0062	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0063	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0064	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0065	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
g0066	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0067	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0068	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0069	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0070	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0071	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0072	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0073	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0074	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
g0075	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0076	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0077	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0078	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0079	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0080	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
g0081	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0082	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
g0083	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2

achapid	ahapid	chapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	acseq
a0001c0001	a0001	c0001	0/1	270	34	54	135	11	35	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0001c0004	a0001	c0004	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002c0002	a0002	c0002	1/0	82	63	8	6	1	3	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0003c0003	a0003	c0003	0/0	2	0	2	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0004c0005	a0004	c0005	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta

acthapid	ahapid	chapid	thapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	actseq
a0001c0001t0001	a0001	c0001	t0001	0/1	234	29	49	114	10	31	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0001c0001t0002	a0001	c0001	t0002	0/0	4	4	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0001c0001t0003	a0001	c0001	t0003	0/0	25	1	1	20	0	3	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0001c0001t0008	a0001	c0001	t0008	0/0	3	0	2	0	1	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0001c0001t0010	a0001	c0001	t0010	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0001c0001t0012	a0001	c0001	t0012	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0001c0001t0014	a0001	c0001	t0014	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0001c0001t0015	a0001	c0001	t0015	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0001c0004t0001	a0001	c0004	t0001	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002c0002t0001	a0002	c0002	t0001	0/0	9	9	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002c0002t0002	a0002	c0002	t0002	0/0	36	25	6	4	1	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002c0002t0004	a0002	c0002	t0004	0/0	18	14	1	0	0	3	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002c0002t0005	a0002	c0002	t0005	0/0	9	9	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002c0002t0006	a0002	c0002	t0006	1/0	3	1	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002c0002t0007	a0002	c0002	t0007	0/0	3	3	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002c0002t0009	a0002	c0002	t0009	0/0	2	0	0	2	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002c0002t0011	a0002	c0002	t0011	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0002c0002t0013	a0002	c0002	t0013	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0003c0003t0001	a0003	c0003	t0001	0/0	2	0	2	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta
a0004c0005t0001	a0004	c0005	t0001	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2	copy fasta

actghapid	ahapid	chapid	thapid	ghapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
a0001c0001t0001g0001	a0001	c0001	t0001	g0001	0/1	88	5	21	45	4	12	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0002	a0001	c0001	t0001	g0002	0/0	55	9	11	22	4	9	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0005	a0001	c0001	t0001	g0005	0/0	10	0	2	5	1	2	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0008	a0001	c0001	t0001	g0008	0/0	6	1	5	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0009	a0001	c0001	t0001	g0009	0/0	7	0	0	7	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0010	a0001	c0001	t0001	g0010	0/0	5	0	0	5	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0011	a0001	c0001	t0001	g0011	0/0	4	0	0	4	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0012	a0001	c0001	t0001	g0012	0/0	4	0	0	4	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0017	a0001	c0001	t0001	g0017	0/0	3	2	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0018	a0001	c0001	t0001	g0018	0/0	3	0	2	0	1	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0021	a0001	c0001	t0001	g0021	0/0	2	0	0	1	0	1	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0022	a0001	c0001	t0001	g0022	0/0	2	0	0	0	0	2	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0023	a0001	c0001	t0001	g0023	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0024	a0001	c0001	t0001	g0024	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0025	a0001	c0001	t0001	g0025	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0026	a0001	c0001	t0001	g0026	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0027	a0001	c0001	t0001	g0027	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0028	a0001	c0001	t0001	g0028	0/0	2	0	1	0	0	1	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0029	a0001	c0001	t0001	g0029	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0030	a0001	c0001	t0001	g0030	0/0	2	0	0	2	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0031	a0001	c0001	t0001	g0031	0/0	2	0	0	2	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0037	a0001	c0001	t0001	g0037	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0044	a0001	c0001	t0001	g0044	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0046	a0001	c0001	t0001	g0046	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0047	a0001	c0001	t0001	g0047	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0048	a0001	c0001	t0001	g0048	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0049	a0001	c0001	t0001	g0049	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0051	a0001	c0001	t0001	g0051	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0052	a0001	c0001	t0001	g0052	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0053	a0001	c0001	t0001	g0053	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0054	a0001	c0001	t0001	g0054	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0058	a0001	c0001	t0001	g0058	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0059	a0001	c0001	t0001	g0059	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0060	a0001	c0001	t0001	g0060	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0061	a0001	c0001	t0001	g0061	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0062	a0001	c0001	t0001	g0062	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0063	a0001	c0001	t0001	g0063	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0064	a0001	c0001	t0001	g0064	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0065	a0001	c0001	t0001	g0065	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0066	a0001	c0001	t0001	g0066	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0067	a0001	c0001	t0001	g0067	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0068	a0001	c0001	t0001	g0068	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0069	a0001	c0001	t0001	g0069	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0070	a0001	c0001	t0001	g0070	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0071	a0001	c0001	t0001	g0071	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0072	a0001	c0001	t0001	g0072	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0073	a0001	c0001	t0001	g0073	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0080	a0001	c0001	t0001	g0080	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0081	a0001	c0001	t0001	g0081	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0001g0082	a0001	c0001	t0001	g0082	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0002g0001	a0001	c0001	t0002	g0001	0/0	3	3	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0002g0005	a0001	c0001	t0002	g0005	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0003g0004	a0001	c0001	t0003	g0004	0/0	19	1	1	15	0	2	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0003g0013	a0001	c0001	t0003	g0013	0/0	4	0	0	4	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0003g0056	a0001	c0001	t0003	g0056	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0003g0057	a0001	c0001	t0003	g0057	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0008g0001	a0001	c0001	t0008	g0001	0/0	2	0	1	0	1	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0008g0029	a0001	c0001	t0008	g0029	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0010g0027	a0001	c0001	t0010	g0027	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0012g0011	a0001	c0001	t0012	g0011	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0014g0004	a0001	c0001	t0014	g0004	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
a0001c0001t0015g0001	a0001	c0001	t0015	g0001	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0001c0004t0001g0005	a0001	c0004	t0001	g0005	0/0	1	0	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0001g0016	a0002	c0002	t0001	g0016	0/0	3	3	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0001g0038	a0002	c0002	t0001	g0038	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0001g0039	a0002	c0002	t0001	g0039	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0001g0041	a0002	c0002	t0001	g0041	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0001g0042	a0002	c0002	t0001	g0042	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0001g0043	a0002	c0002	t0001	g0043	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0001g0078	a0002	c0002	t0001	g0078	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0002g0003	a0002	c0002	t0002	g0003	0/0	17	12	4	0	1	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0002g0007	a0002	c0002	t0002	g0007	0/0	8	7	0	1	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0002g0019	a0002	c0002	t0002	g0019	0/0	2	0	2	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0002g0020	a0002	c0002	t0002	g0020	0/0	3	0	0	3	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0002g0032	a0002	c0002	t0002	g0032	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0002g0036	a0002	c0002	t0002	g0036	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0002g0075	a0002	c0002	t0002	g0075	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0002g0077	a0002	c0002	t0002	g0077	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0002g0079	a0002	c0002	t0002	g0079	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0004g0006	a0002	c0002	t0004	g0006	0/0	8	7	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0004g0014	a0002	c0002	t0004	g0014	0/0	4	3	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0004g0015	a0002	c0002	t0004	g0015	0/0	4	4	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0004g0074	a0002	c0002	t0004	g0074	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0004g0083	a0002	c0002	t0004	g0083	0/0	1	0	0	0	0	1	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0005g0003	a0002	c0002	t0005	g0003	0/0	8	8	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0005g0036	a0002	c0002	t0005	g0036	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0006g0034	a0002	c0002	t0006	g0034	1/0	2	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0006g0040	a0002	c0002	t0006	g0040	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0007g0035	a0002	c0002	t0007	g0035	0/0	2	2	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0007g0076	a0002	c0002	t0007	g0076	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0009g0033	a0002	c0002	t0009	g0033	0/0	2	0	0	2	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0011g0019	a0002	c0002	t0011	g0019	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0002c0002t0013g0045	a0002	c0002	t0013	g0045	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0003c0003t0001g0008	a0003	c0003	t0001	g0008	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0003c0003t0001g0050	a0003	c0003	t0001	g0050	0/0	1	0	1	0	0	0	MSX2_chr5_174719582_174735896	MSX2
a0004c0005t0001g0055	a0004	c0005	t0001	g0055	0/0	1	1	0	0	0	0	MSX2_chr5_174719582_174735896	MSX2

sampleid	haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename
HG00099	hp1	a0001	c0001	t0001	g0002	EUR	GBR	MSX2_chr5_174719582_174735896	MSX2
HG00099	hp2	a0002	c0002	t0002	g0003	EUR	GBR	MSX2_chr5_174719582_174735896	MSX2
HG00280	hp1	a0001	c0001	t0001	g0002	EUR	FIN	MSX2_chr5_174719582_174735896	MSX2
HG00280	hp2	a0001	c0001	t0001	g0005	EUR	FIN	MSX2_chr5_174719582_174735896	MSX2
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MSX2_chr5_174719582_174735896	MSX2
HG00558	hp2	a0001	c0001	t0001	g0002	EAS	CHS	MSX2_chr5_174719582_174735896	MSX2
HG00609	hp1	a0001	c0001	t0001	g0002	EAS	CHS	MSX2_chr5_174719582_174735896	MSX2
HG00609	hp2	a0001	c0001	t0001	g0012	EAS	CHS	MSX2_chr5_174719582_174735896	MSX2
HG00621	hp1	a0002	c0002	t0002	g0007	EAS	CHS	MSX2_chr5_174719582_174735896	MSX2
HG00621	hp2	a0001	c0001	t0003	g0013	EAS	CHS	MSX2_chr5_174719582_174735896	MSX2
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG00642	hp2	a0001	c0001	t0001	g0002	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG00673	hp1	a0001	c0001	t0001	g0030	EAS	CHS	MSX2_chr5_174719582_174735896	MSX2
HG00673	hp2	a0001	c0001	t0001	g0030	EAS	CHS	MSX2_chr5_174719582_174735896	MSX2
HG00733	hp1	a0001	c0001	t0008	g0029	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG00733	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG00735	hp1	a0002	c0002	t0002	g0003	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG00735	hp2	a0001	c0001	t0001	g0005	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG00741	hp1	a0001	c0001	t0001	g0027	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG00741	hp2	a0001	c0001	t0001	g0008	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01070	hp1	a0001	c0001	t0001	g0008	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01070	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01071	hp1	a0001	c0001	t0001	g0008	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01071	hp2	a0001	c0001	t0001	g0002	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01074	hp1	a0001	c0001	t0010	g0027	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01074	hp2	a0001	c0001	t0001	g0002	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01099	hp1	a0001	c0001	t0001	g0005	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01099	hp2	a0002	c0002	t0004	g0006	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01106	hp1	a0002	c0002	t0002	g0019	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01106	hp2	a0001	c0001	t0001	g0002	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01109	hp1	a0002	c0002	t0002	g0003	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01109	hp2	a0002	c0002	t0002	g0003	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01167	hp1	a0001	c0001	t0001	g0018	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01167	hp2	a0001	c0001	t0001	g0017	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01168	hp1	a0003	c0003	t0001	g0050	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01168	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01169	hp1	a0003	c0003	t0001	g0008	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01169	hp2	a0001	c0001	t0001	g0018	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01175	hp1	a0001	c0001	t0015	g0001	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01243	hp2	a0001	c0001	t0001	g0002	AMR	PUR	MSX2_chr5_174719582_174735896	MSX2
HG01257	hp1	a0001	c0001	t0001	g0002	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01257	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01258	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01261	hp1	a0002	c0002	t0006	g0034	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01261	hp2	a0001	c0001	t0001	g0028	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01346	hp2	a0001	c0001	t0001	g0067	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01358	hp1	a0001	c0001	t0001	g0002	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01358	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01361	hp1	a0001	c0001	t0001	g0008	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01361	hp2	a0001	c0001	t0001	g0047	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01433	hp1	a0001	c0001	t0001	g0002	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01433	hp2	a0001	c0001	t0001	g0002	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01496	hp1	a0002	c0002	t0002	g0019	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MSX2_chr5_174719582_174735896	MSX2
HG01516	hp2	a0001	c0001	t0001	g0002	EUR	IBS	MSX2_chr5_174719582_174735896	MSX2
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MSX2_chr5_174719582_174735896	MSX2
HG01517	hp2	a0001	c0001	t0001	g0002	EUR	IBS	MSX2_chr5_174719582_174735896	MSX2
HG01884	hp1	a0002	c0002	t0004	g0006	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG01884	hp2	a0001	c0001	t0001	g0001	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG01891	hp1	a0002	c0002	t0001	g0078	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG01891	hp2	a0002	c0002	t0002	g0003	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG01943	hp1	a0001	c0001	t0001	g0029	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG01943	hp2	a0001	c0001	t0008	g0001	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG01952	hp1	a0001	c0001	t0001	g0062	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG01952	hp2	a0001	c0001	t0001	g0008	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG01975	hp2	a0001	c0001	t0003	g0004	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG01978	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG02004	hp2	a0001	c0001	t0001	g0059	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG02015	hp1	a0001	c0001	t0001	g0009	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02015	hp2	a0001	c0001	t0001	g0001	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02055	hp1	a0002	c0002	t0005	g0003	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02055	hp2	a0002	c0002	t0004	g0014	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02056	hp2	a0001	c0001	t0001	g0001	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02071	hp1	a0001	c0001	t0001	g0005	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02071	hp2	a0001	c0001	t0001	g0005	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02074	hp1	a0001	c0001	t0001	g0037	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02074	hp2	a0001	c0001	t0001	g0011	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02080	hp1	a0001	c0001	t0001	g0002	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02132	hp1	a0001	c0001	t0001	g0009	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02132	hp2	a0001	c0001	t0001	g0001	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02135	hp2	a0001	c0001	t0003	g0004	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02145	hp1	a0002	c0002	t0004	g0006	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02145	hp2	a0002	c0002	t0001	g0038	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02148	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG02155	hp1	a0001	c0001	t0001	g0001	EAS	CDX	MSX2_chr5_174719582_174735896	MSX2
HG02155	hp2	a0001	c0001	t0003	g0004	EAS	CDX	MSX2_chr5_174719582_174735896	MSX2
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	MSX2_chr5_174719582_174735896	MSX2
HG02165	hp2	a0001	c0001	t0001	g0068	EAS	CDX	MSX2_chr5_174719582_174735896	MSX2
HG02257	hp1	a0002	c0002	t0005	g0003	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02257	hp2	a0001	c0001	t0001	g0080	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02258	hp1	a0001	c0001	t0001	g0002	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02258	hp2	a0001	c0001	t0001	g0017	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02273	hp1	a0001	c0001	t0001	g0002	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG02280	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02280	hp2	a0002	c0002	t0002	g0003	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02300	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG02300	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MSX2_chr5_174719582_174735896	MSX2
HG02451	hp1	a0001	c0001	t0002	g0005	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02451	hp2	a0002	c0002	t0001	g0043	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02523	hp2	a0001	c0001	t0001	g0002	EAS	KHV	MSX2_chr5_174719582_174735896	MSX2
HG02572	hp1	a0002	c0002	t0013	g0045	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02572	hp2	a0002	c0002	t0002	g0003	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02602	hp1	a0001	c0001	t0001	g0005	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG02602	hp2	a0001	c0001	t0001	g0060	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG02615	hp1	a0002	c0002	t0005	g0003	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02622	hp1	a0002	c0002	t0004	g0006	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02622	hp2	a0002	c0002	t0002	g0075	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02630	hp1	a0001	c0001	t0002	g0001	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02630	hp2	a0002	c0002	t0001	g0041	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02647	hp1	a0002	c0002	t0007	g0076	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02647	hp2	a0002	c0002	t0002	g0003	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02683	hp1	a0001	c0001	t0001	g0002	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG02683	hp2	a0001	c0001	t0001	g0049	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG02698	hp1	a0001	c0001	t0001	g0002	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG02698	hp2	a0001	c0001	t0001	g0058	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG02717	hp1	a0002	c0002	t0002	g0007	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02717	hp2	a0001	c0001	t0002	g0001	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02723	hp1	a0001	c0001	t0001	g0002	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02723	hp2	a0001	c0001	t0001	g0017	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG02735	hp2	a0002	c0002	t0004	g0083	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG02738	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG02809	hp1	a0002	c0002	t0002	g0003	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02809	hp2	a0002	c0002	t0002	g0003	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02818	hp1	a0004	c0005	t0001	g0055	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02818	hp2	a0002	c0002	t0001	g0039	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02886	hp1	a0002	c0002	t0002	g0079	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02886	hp2	a0001	c0001	t0001	g0002	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02895	hp1	a0002	c0002	t0004	g0006	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02895	hp2	a0001	c0001	t0001	g0024	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02896	hp1	a0002	c0002	t0001	g0016	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02896	hp2	a0002	c0002	t0005	g0036	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02897	hp1	a0002	c0002	t0001	g0016	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02897	hp2	a0001	c0001	t0001	g0024	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG02965	hp1	a0002	c0002	t0005	g0003	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG02965	hp2	a0001	c0001	t0001	g0002	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG02970	hp1	a0002	c0002	t0007	g0035	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG02970	hp2	a0001	c0001	t0001	g0025	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG02976	hp1	a0002	c0002	t0001	g0042	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG02976	hp2	a0001	c0001	t0001	g0051	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG03017	hp1	a0001	c0001	t0001	g0021	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03017	hp2	a0001	c0001	t0003	g0056	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03041	hp1	a0002	c0002	t0005	g0003	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG03041	hp2	a0002	c0002	t0001	g0016	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG03098	hp1	a0002	c0002	t0004	g0014	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03098	hp2	a0001	c0001	t0003	g0004	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03130	hp1	a0002	c0002	t0011	g0019	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG03130	hp2	a0002	c0002	t0004	g0015	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG03139	hp1	a0002	c0002	t0004	g0014	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG03139	hp2	a0001	c0001	t0001	g0002	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG03195	hp1	a0001	c0001	t0001	g0026	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG03195	hp2	a0002	c0002	t0002	g0007	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG03209	hp1	a0001	c0001	t0001	g0002	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03209	hp2	a0001	c0001	t0001	g0023	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03225	hp2	a0002	c0002	t0005	g0003	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03239	hp2	a0001	c0001	t0001	g0022	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03453	hp1	a0001	c0001	t0001	g0023	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03453	hp2	a0002	c0002	t0002	g0003	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03486	hp1	a0002	c0002	t0004	g0006	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03486	hp2	a0002	c0002	t0002	g0003	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03491	hp2	a0001	c0001	t0001	g0002	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03492	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03516	hp1	a0002	c0002	t0002	g0036	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG03516	hp2	a0001	c0001	t0001	g0054	AFR	ESN	MSX2_chr5_174719582_174735896	MSX2
HG03540	hp1	a0002	c0002	t0007	g0035	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG03540	hp2	a0002	c0002	t0002	g0032	AFR	GWD	MSX2_chr5_174719582_174735896	MSX2
HG03579	hp1	a0002	c0002	t0002	g0007	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03579	hp2	a0002	c0002	t0002	g0007	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03654	hp2	a0001	c0001	t0001	g0028	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03669	hp1	a0001	c0001	t0001	g0065	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03669	hp2	a0001	c0001	t0001	g0005	SAS	PJL	MSX2_chr5_174719582_174735896	MSX2
HG03831	hp1	a0001	c0001	t0001	g0002	SAS	BEB	MSX2_chr5_174719582_174735896	MSX2
HG03831	hp2	a0001	c0001	t0003	g0004	SAS	BEB	MSX2_chr5_174719582_174735896	MSX2
HG03834	hp1	a0001	c0001	t0001	g0002	SAS	BEB	MSX2_chr5_174719582_174735896	MSX2
HG03834	hp2	a0001	c0001	t0001	g0002	SAS	BEB	MSX2_chr5_174719582_174735896	MSX2
HG03927	hp1	a0001	c0001	t0001	g0022	SAS	BEB	MSX2_chr5_174719582_174735896	MSX2
HG03927	hp2	a0001	c0001	t0014	g0004	SAS	BEB	MSX2_chr5_174719582_174735896	MSX2
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	MSX2_chr5_174719582_174735896	MSX2
HG03942	hp2	a0001	c0001	t0001	g0001	SAS	BEB	MSX2_chr5_174719582_174735896	MSX2
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	MSX2_chr5_174719582_174735896	MSX2
HG04184	hp2	a0001	c0001	t0001	g0002	SAS	BEB	MSX2_chr5_174719582_174735896	MSX2
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	MSX2_chr5_174719582_174735896	MSX2
HG04199	hp2	a0001	c0001	t0003	g0004	SAS	STU	MSX2_chr5_174719582_174735896	MSX2
HG04204	hp1	a0002	c0002	t0004	g0074	SAS	STU	MSX2_chr5_174719582_174735896	MSX2
HG04204	hp2	a0001	c0001	t0001	g0002	SAS	STU	MSX2_chr5_174719582_174735896	MSX2
HG04228	hp1	a0002	c0002	t0004	g0014	SAS	STU	MSX2_chr5_174719582_174735896	MSX2
HG04228	hp2	a0001	c0001	t0001	g0002	SAS	STU	MSX2_chr5_174719582_174735896	MSX2
NA18522	hp1	a0002	c0002	t0005	g0003	AFR	YRI	MSX2_chr5_174719582_174735896	MSX2
NA18522	hp2	a0002	c0002	t0004	g0015	AFR	YRI	MSX2_chr5_174719582_174735896	MSX2
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	MSX2_chr5_174719582_174735896	MSX2
NA18612	hp2	a0001	c0001	t0001	g0009	EAS	CHB	MSX2_chr5_174719582_174735896	MSX2
NA18747	hp1	a0001	c0001	t0001	g0002	EAS	CHB	MSX2_chr5_174719582_174735896	MSX2
NA18747	hp2	a0001	c0001	t0001	g0001	EAS	CHB	MSX2_chr5_174719582_174735896	MSX2
NA18906	hp1	a0002	c0002	t0002	g0003	AFR	YRI	MSX2_chr5_174719582_174735896	MSX2
NA18906	hp2	a0002	c0002	t0004	g0015	AFR	YRI	MSX2_chr5_174719582_174735896	MSX2
NA18941	hp1	a0001	c0001	t0001	g0011	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18941	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18942	hp1	a0001	c0001	t0001	g0010	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18942	hp2	a0001	c0001	t0001	g0005	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18943	hp2	a0001	c0001	t0001	g0011	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18944	hp2	a0001	c0001	t0001	g0071	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18947	hp1	a0001	c0001	t0001	g0012	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18947	hp2	a0001	c0001	t0001	g0009	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18948	hp1	a0001	c0001	t0001	g0009	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18948	hp2	a0001	c0001	t0001	g0053	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18951	hp1	a0001	c0001	t0001	g0009	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18952	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18952	hp2	a0001	c0001	t0001	g0005	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18954	hp1	a0002	c0002	t0002	g0020	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18954	hp2	a0001	c0001	t0001	g0009	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18960	hp2	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18962	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18962	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18963	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18963	hp2	a0001	c0001	t0001	g0082	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18964	hp1	a0001	c0001	t0001	g0073	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18965	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18965	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18969	hp1	a0001	c0001	t0001	g0011	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18969	hp2	a0001	c0001	t0001	g0046	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18971	hp1	a0001	c0004	t0001	g0005	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18971	hp2	a0001	c0001	t0001	g0010	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18974	hp2	a0001	c0001	t0001	g0021	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18975	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18975	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18977	hp1	a0001	c0001	t0001	g0066	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18977	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18978	hp1	a0001	c0001	t0001	g0064	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18978	hp2	a0001	c0001	t0001	g0010	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18979	hp1	a0001	c0001	t0003	g0013	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18983	hp2	a0002	c0002	t0009	g0033	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18985	hp2	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18986	hp1	a0001	c0001	t0003	g0057	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18986	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18989	hp1	a0001	c0001	t0001	g0052	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18989	hp2	a0001	c0001	t0003	g0013	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18990	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18990	hp2	a0002	c0002	t0009	g0033	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18991	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18991	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18993	hp1	a0001	c0001	t0001	g0063	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18993	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18995	hp2	a0001	c0001	t0001	g0069	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18997	hp1	a0001	c0001	t0012	g0011	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18997	hp2	a0002	c0002	t0002	g0020	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18998	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18998	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18999	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19000	hp2	a0001	c0001	t0001	g0012	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19004	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19005	hp2	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19007	hp1	a0001	c0001	t0001	g0010	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19007	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19010	hp1	a0001	c0001	t0003	g0013	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19010	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19011	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19011	hp2	a0001	c0001	t0001	g0044	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19012	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19030	hp1	a0002	c0002	t0002	g0007	AFR	LWK	MSX2_chr5_174719582_174735896	MSX2
NA19030	hp2	a0002	c0002	t0002	g0032	AFR	LWK	MSX2_chr5_174719582_174735896	MSX2
NA19043	hp1	a0001	c0001	t0001	g0002	AFR	LWK	MSX2_chr5_174719582_174735896	MSX2
NA19043	hp2	a0001	c0001	t0002	g0001	AFR	LWK	MSX2_chr5_174719582_174735896	MSX2
NA19054	hp1	a0001	c0001	t0001	g0031	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19054	hp2	a0001	c0001	t0001	g0070	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19057	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19059	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19059	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19062	hp1	a0001	c0001	t0001	g0061	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19062	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19063	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19065	hp2	a0001	c0001	t0001	g0031	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19066	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19070	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19070	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19072	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19072	hp2	a0001	c0001	t0001	g0081	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19078	hp1	a0001	c0001	t0001	g0012	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19078	hp2	a0001	c0001	t0001	g0005	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19079	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19079	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19085	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19085	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19086	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19086	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19090	hp1	a0001	c0001	t0001	g0010	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19090	hp2	a0001	c0001	t0003	g0004	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19091	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19091	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA19240	hp1	a0002	c0002	t0002	g0007	AFR	YRI	MSX2_chr5_174719582_174735896	MSX2
NA19240	hp2	a0001	c0001	t0001	g0026	AFR	YRI	MSX2_chr5_174719582_174735896	MSX2
NA20129	hp1	a0002	c0002	t0004	g0015	AFR	ASW	MSX2_chr5_174719582_174735896	MSX2
NA20129	hp2	a0001	c0001	t0001	g0072	AFR	ASW	MSX2_chr5_174719582_174735896	MSX2
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	MSX2_chr5_174719582_174735896	MSX2
NA20752	hp2	a0001	c0001	t0001	g0018	EUR	TSI	MSX2_chr5_174719582_174735896	MSX2
NA20805	hp1	a0001	c0001	t0008	g0001	EUR	TSI	MSX2_chr5_174719582_174735896	MSX2
NA20805	hp2	a0001	c0001	t0001	g0001	EUR	TSI	MSX2_chr5_174719582_174735896	MSX2
HG01123	hp1	a0002	c0002	t0002	g0003	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MSX2_chr5_174719582_174735896	MSX2
HG02109	hp1	a0001	c0001	t0001	g0002	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02109	hp2	a0002	c0002	t0002	g0007	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02486	hp1	a0001	c0001	t0001	g0025	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02486	hp2	a0001	c0001	t0001	g0001	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02559	hp1	a0002	c0002	t0002	g0003	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG02559	hp2	a0001	c0001	t0001	g0002	AFR	ACB	MSX2_chr5_174719582_174735896	MSX2
HG03471	hp1	a0002	c0002	t0004	g0006	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG03471	hp2	a0002	c0002	t0005	g0003	AFR	MSL	MSX2_chr5_174719582_174735896	MSX2
HG06807	hp1	a0002	c0002	t0004	g0006	AFR	USA	MSX2_chr5_174719582_174735896	MSX2
HG06807	hp2	a0002	c0002	t0006	g0040	AFR	USA	MSX2_chr5_174719582_174735896	MSX2
NA18955	hp1	a0001	c0001	t0001	g0048	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA18955	hp2	a0002	c0002	t0002	g0020	EAS	JPT	MSX2_chr5_174719582_174735896	MSX2
NA20300	hp1	a0001	c0001	t0001	g0008	AFR	USA	MSX2_chr5_174719582_174735896	MSX2
NA20300	hp2	a0002	c0002	t0002	g0003	AFR	USA	MSX2_chr5_174719582_174735896	MSX2
NA21309	hp1	a0002	c0002	t0002	g0003	AFR	LWK	MSX2_chr5_174719582_174735896	MSX2
NA21309	hp2	a0002	c0002	t0002	g0077	AFR	LWK	MSX2_chr5_174719582_174735896	MSX2
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	MSX2_chr5_174719582_174735896	MSX2
homoSapiens_grch38	hp1	a0002	c0002	t0006	g0034	REF	REF	MSX2_chr5_174719582_174735896	MSX2

chr:pos	ref	alt	# # of ahapid:amio-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	chr	pos
chr5:174724856	C C	G G	1	a0004 a0004	1	HG02818.hp1 HG02818.hp1	missense_variant	MODERATE	c.197C>G c.197C>G	p.Pro66Arg p.Pro66Arg	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/2	275/2195	197/804	66/267	chr5	174724856
chr5:174729165	T T	C C	3	a0001 a0003 a0004 a0001 a0003 a0004	274	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(271): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02886.hp2 HG02895.hp2 HG02897.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.386T>C c.386T>C	p.Met129Thr p.Met129Thr	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	464/2195	386/804	129/267	chr5	174729165
chr5:174729568	G G	A A	1	a0003 a0003	2	HG01168.hp1 HG01169.hp1 HG01168.hp1 HG01169.hp1	missense_variant	MODERATE	c.789G>A c.789G>A	p.Met263Ile p.Met263Ile	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	867/2195	789/804	263/267	chr5	174729568

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	distance	status	chr	pos
chr5:174729214	G G	A A	1	a0001c0004 a0001c0004	1	NA18971.hp1 NA18971.hp1	synonymous_variant	LOW	c.435G>A c.435G>A	p.Pro145Pro p.Pro145Pro	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	513/2195	435/804	145/267			chr5	174729214

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chr5:174724643	C C	G G	2	a0001c0001t0008 a0001c0001t0015 a0001c0001t0008 a0001c0001t0015	4	HG00733.hp1 HG01175.hp1 HG01943.hp2 others(1): Show HG00733.hp1 HG01175.hp1 HG01943.hp2 NA20805.hp1	5_prime_UTR_variant	MODIFIER	c.-17C>G c.-17C>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/2	17		chr5	174724643
chr5:174724646	A A	G G	1	a0001c0001t0014 a0001c0001t0014	1	HG03927.hp2 HG03927.hp2	5_prime_UTR_variant	MODIFIER	c.-14A>G c.-14A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/2	14		chr5	174724646
chr5:174729932	T T	C C	1	a0002c0002t0005 a0002c0002t0005	9	HG02055.hp1 HG02257.hp1 HG02615.hp1 others(6): Show HG02055.hp1 HG02257.hp1 HG02615.hp1 HG02896.hp2 HG02965.hp1 HG03041.hp1 HG03225.hp2 HG03471.hp2 NA18522.hp1	3_prime_UTR_variant	MODIFIER	c.349T>C c.349T>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	349		chr5	174729932
chr5:174729949	T T	G G	1	a0001c0001t0010 a0001c0001t0010	1	HG01074.hp1 HG01074.hp1	3_prime_UTR_variant	MODIFIER	c.366T>G c.366T>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	366		chr5	174729949
chr5:174729999	A A	C C	1	a0002c0002t0004 a0002c0002t0004	18	HG01099.hp2 HG01884.hp1 HG02055.hp2 others(15): Show HG01099.hp2 HG01884.hp1 HG02055.hp2 HG02145.hp1 HG02622.hp1 HG02735.hp2 HG02895.hp1 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03471.hp1 HG03486.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp2 NA18906.hp2 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.416A>C c.416A>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	416		chr5	174729999
chr5:174730093	A A	G G	11	a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 others(8): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0004t0001 a0002c0002t0001 a0002c0002t0013 a0003c0003t0001 a0004c0005t0001	277	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(274): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp1 HG01943.hp1 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.510A>G c.510A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	510		chr5	174730093
chr5:174730241	C C	T T	2	a0002c0002t0004 a0002c0002t0013 a0002c0002t0004 a0002c0002t0013	19	HG01099.hp2 HG01884.hp1 HG02055.hp2 others(16): Show HG01099.hp2 HG01884.hp1 HG02055.hp2 HG02145.hp1 HG02572.hp1 HG02622.hp1 HG02735.hp2 HG02895.hp1 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03471.hp1 HG03486.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp2 NA18906.hp2 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.658C>T c.658C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	658		chr5	174730241
chr5:174730306	A A	C C	1	a0002c0002t0007 a0002c0002t0007	3	HG02647.hp1 HG02970.hp1 HG03540.hp1 HG02647.hp1 HG02970.hp1 HG03540.hp1	3_prime_UTR_variant	MODIFIER	c.723A>C c.723A>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	723		chr5	174730306
chr5:174730580	G G	GA GA	19	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(16): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0004t0001 a0002c0002t0001 a0002c0002t0002 a0002c0002t0004 a0002c0002t0005 a0002c0002t0007 a0002c0002t0009 a0002c0002t0011 a0002c0002t0013 a0003c0003t0001 a0004c0005t0001	353	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(350): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18955.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.1006dupA c.1006dupA	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	1007	INFO_REALIGN_3_PRIME	chr5	174730580
chr5:174730663	T T	TG TG	2	a0001c0001t0003 a0001c0001t0014 a0001c0001t0003 a0001c0001t0014	26	HG00621.hp2 HG01975.hp2 HG02135.hp2 others(23): Show HG00621.hp2 HG01975.hp2 HG02135.hp2 HG02155.hp2 HG03017.hp2 HG03098.hp2 HG03831.hp2 HG03927.hp2 HG04199.hp2 NA18952.hp1 NA18960.hp2 NA18962.hp1 NA18963.hp1 NA18965.hp1 NA18975.hp1 NA18979.hp1 NA18985.hp2 NA18986.hp1 NA18989.hp2 NA18991.hp1 NA18998.hp1 NA19005.hp2 NA19010.hp1 NA19011.hp1 NA19072.hp1 NA19090.hp2	3_prime_UTR_variant	MODIFIER	c.1086dupG c.1086dupG	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	1087	INFO_REALIGN_3_PRIME	chr5	174730663
chr5:174730708	A A	G G	9	a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 a0001c0001t0014 a0001c0001t0015 a0001c0004t0001 a0002c0002t0001 a0003c0003t0001 a0004c0005t0001	275	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(272): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp1 HG01943.hp1 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.1125A>G c.1125A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	1125		chr5	174730708
chr5:174730729	T T	C C	9	a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 a0001c0001t0014 a0001c0001t0015 a0001c0004t0001 a0002c0002t0001 a0003c0003t0001 a0004c0005t0001	275	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(272): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp1 HG01943.hp1 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.1146T>C c.1146T>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	1146		chr5	174730729
chr5:174730759	G G	C C	12	a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 others(9): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 a0001c0001t0014 a0001c0001t0015 a0001c0004t0001 a0002c0002t0001 a0002c0002t0004 a0002c0002t0009 a0002c0002t0013 a0003c0003t0001 a0004c0005t0001	296	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(293): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01943.hp1 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03471.hp1 HG03486.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.1176G>C c.1176G>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	1176		chr5	174730759
chr5:174730789	T T	C C	1	a0002c0002t0009 a0002c0002t0009	2	NA18983.hp2 NA18990.hp2 NA18983.hp2 NA18990.hp2	3_prime_UTR_variant	MODIFIER	c.1206T>C c.1206T>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	1206		chr5	174730789
chr5:174730832	T T	C C	1	a0002c0002t0011 a0002c0002t0011	1	HG03130.hp1 HG03130.hp1	3_prime_UTR_variant	MODIFIER	c.1249T>C c.1249T>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	2/2	1249		chr5	174730832

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr5:174725097	G G	A A	71	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(68): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0014g0004 a0001c0001t0015g0001 a0001c0004t0001g0005 a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0006g0040 a0002c0002t0013g0045 a0003c0003t0001g0008 a0003c0003t0001g0050 a0004c0005t0001g0055	281	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(278): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp2 HG06807.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.379+59G>A c.379+59G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725097
chr5:174725106	C C	T T	3	a0002c0002t0002g0007 a0002c0002t0002g0020 a0002c0002t0004g0015 a0002c0002t0002g0007 a0002c0002t0002g0020 a0002c0002t0004g0015	15	HG00621.hp1 HG02109.hp2 HG02717.hp1 others(12): Show HG00621.hp1 HG02109.hp2 HG02717.hp1 HG03130.hp2 HG03195.hp2 HG03579.hp1 HG03579.hp2 NA18522.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp2 NA18997.hp2 NA19030.hp1 NA19240.hp1 NA20129.hp1	intron_variant	MODIFIER	c.379+68C>T c.379+68C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725106
chr5:174725107	C C	T T	3	a0002c0002t0002g0007 a0002c0002t0002g0020 a0002c0002t0004g0015 a0002c0002t0002g0007 a0002c0002t0002g0020 a0002c0002t0004g0015	15	HG00621.hp1 HG02109.hp2 HG02717.hp1 others(12): Show HG00621.hp1 HG02109.hp2 HG02717.hp1 HG03130.hp2 HG03195.hp2 HG03579.hp1 HG03579.hp2 NA18522.hp2 NA18906.hp2 NA18954.hp1 NA18955.hp2 NA18997.hp2 NA19030.hp1 NA19240.hp1 NA20129.hp1	intron_variant	MODIFIER	c.379+69C>T c.379+69C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725107
chr5:174725190	G G	C C	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.379+152G>C c.379+152G>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725190
chr5:174725208	A A	G G	1	a0002c0002t0004g0083 a0002c0002t0004g0083	1	HG02735.hp2 HG02735.hp2	intron_variant	MODIFIER	c.379+170A>G c.379+170A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725208
chr5:174725240	G G	T T	1	a0001c0001t0001g0073 a0001c0001t0001g0073	1	NA18964.hp1 NA18964.hp1	intron_variant	MODIFIER	c.379+202G>T c.379+202G>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725240
chr5:174725262	C C	CT CT	2	a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0030 a0001c0001t0001g0031	4	HG00673.hp1 HG00673.hp2 NA19054.hp1 others(1): Show HG00673.hp1 HG00673.hp2 NA19054.hp1 NA19065.hp2	intron_variant	MODIFIER	c.379+225dupT c.379+225dupT	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174725262
chr5:174725312	G G	A A	1	a0001c0001t0001g0012 a0001c0001t0001g0012	4	HG00609.hp2 NA18947.hp1 NA19000.hp2 others(1): Show HG00609.hp2 NA18947.hp1 NA19000.hp2 NA19078.hp1	intron_variant	MODIFIER	c.379+274G>A c.379+274G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725312
chr5:174725411	C C	T T	1	a0001c0001t0001g0072 a0001c0001t0001g0072	1	NA20129.hp2 NA20129.hp2	intron_variant	MODIFIER	c.379+373C>T c.379+373C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725411
chr5:174725598	AAGGGATG others(8): Show AAGGGATGGTGGCACC	A A	34	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 others(31): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0082 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0015g0001 a0001c0004t0001g0005	150	HG00280.hp2 HG00558.hp1 HG00609.hp2 others(147): Show HG00280.hp2 HG00558.hp1 HG00609.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG01070.hp2 HG01074.hp1 HG01099.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG01884.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02486.hp2 HG02523.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02717.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG03225.hp1 HG03239.hp1 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04199.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp2 NA18954.hp2 NA18960.hp1 NA18962.hp2 NA18963.hp2 NA18964.hp2 NA18965.hp2 NA18969.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18986.hp2 NA18993.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19070.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp2 NA19085.hp2 NA19086.hp2 NA19091.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.379+574_379+588del others(15): Show c.379+574_379+588delCCAGGGATGGTGGCA	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174725598
chr5:174725641	G G	A A	3	a0002c0002t0004g0014 a0002c0002t0004g0074 a0002c0002t0004g0083 a0002c0002t0004g0014 a0002c0002t0004g0074 a0002c0002t0004g0083	6	HG02055.hp2 HG02735.hp2 HG03098.hp1 others(3): Show HG02055.hp2 HG02735.hp2 HG03098.hp1 HG03139.hp1 HG04204.hp1 HG04228.hp1	intron_variant	MODIFIER	c.379+603G>A c.379+603G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725641
chr5:174725692	G G	A A	7	a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 others(4): Show a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0006g0040	9	HG02145.hp2 HG02451.hp2 HG02630.hp2 others(6): Show HG02145.hp2 HG02451.hp2 HG02630.hp2 HG02818.hp2 HG02896.hp1 HG02897.hp1 HG02976.hp1 HG03041.hp2 HG06807.hp2	intron_variant	MODIFIER	c.379+654G>A c.379+654G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725692
chr5:174725750	A A	C C	2	a0002c0002t0002g0007 a0002c0002t0004g0015 a0002c0002t0002g0007 a0002c0002t0004g0015	12	HG00621.hp1 HG02109.hp2 HG02717.hp1 others(9): Show HG00621.hp1 HG02109.hp2 HG02717.hp1 HG03130.hp2 HG03195.hp2 HG03579.hp1 HG03579.hp2 NA18522.hp2 NA18906.hp2 NA19030.hp1 NA19240.hp1 NA20129.hp1	intron_variant	MODIFIER	c.379+712A>C c.379+712A>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725750
chr5:174725974	C C	G G	7	a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 others(4): Show a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0006g0040	9	HG02145.hp2 HG02451.hp2 HG02630.hp2 others(6): Show HG02145.hp2 HG02451.hp2 HG02630.hp2 HG02818.hp2 HG02896.hp1 HG02897.hp1 HG02976.hp1 HG03041.hp2 HG06807.hp2	intron_variant	MODIFIER	c.379+936C>G c.379+936C>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174725974
chr5:174726034	A A	G G	46	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 others(43): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0082 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0014g0004 a0001c0001t0015g0001 a0001c0004t0001g0005 a0004c0005t0001g0055	189	HG00280.hp2 HG00558.hp1 HG00609.hp2 others(186): Show HG00280.hp2 HG00558.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG01070.hp2 HG01074.hp1 HG01099.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG01884.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02258.hp2 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02895.hp2 HG02897.hp2 HG02970.hp2 HG03017.hp2 HG03098.hp2 HG03195.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03453.hp1 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp2 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04199.hp1 HG04199.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp2 NA18991.hp1 NA18993.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp1 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19005.hp1 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19012.hp2 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19070.hp2 NA19072.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp2 NA19085.hp2 NA19086.hp2 NA19090.hp2 NA19091.hp2 NA19240.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.379+996A>G c.379+996A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726034
chr5:174726041	C C	G G	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	NA18944.hp2 NA18944.hp2	intron_variant	MODIFIER	c.379+1003C>G c.379+1003C>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726041
chr5:174726158	T T	A A	1	a0001c0001t0001g0060 a0001c0001t0001g0060	1	HG02602.hp2 HG02602.hp2	intron_variant	MODIFIER	c.379+1120T>A c.379+1120T>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726158
chr5:174726202	A A	G G	73	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(70): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0014g0004 a0001c0001t0015g0001 a0001c0004t0001g0005 a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0006g0040 a0002c0002t0013g0045 a0003c0003t0001g0008 a0003c0003t0001g0050 a0004c0005t0001g0055	283	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(280): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp2 HG06807.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.379+1164A>G c.379+1164A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726202
chr5:174726207	G G	C C	72	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(69): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0081 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0014g0004 a0001c0001t0015g0001 a0001c0004t0001g0005 a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0006g0040 a0002c0002t0013g0045 a0003c0003t0001g0008 a0003c0003t0001g0050 a0004c0005t0001g0055	282	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(279): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp2 HG06807.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.379+1169G>C c.379+1169G>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726207
chr5:174726207	G G	T T	1	a0001c0001t0001g0082 a0001c0001t0001g0082	1	NA18963.hp2 NA18963.hp2	intron_variant	MODIFIER	c.379+1169G>T c.379+1169G>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726207
chr5:174726286	A A	G G	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	NA18948.hp2 NA18948.hp2	intron_variant	MODIFIER	c.379+1248A>G c.379+1248A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726286
chr5:174726302	C C	T T	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	HG02698.hp2 HG02698.hp2	intron_variant	MODIFIER	c.379+1264C>T c.379+1264C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726302
chr5:174726522	G G	A A	1	a0001c0001t0001g0061 a0001c0001t0001g0061	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.379+1484G>A c.379+1484G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726522
chr5:174726586	C C	CA CA	33	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0011 others(30): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0031 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0071 a0001c0001t0001g0081 a0001c0001t0002g0001 a0001c0001t0003g0013 a0001c0001t0008g0001 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0015g0001 a0002c0002t0001g0038 a0002c0002t0002g0075 a0002c0002t0013g0045 a0004c0005t0001g0055	145	HG00558.hp1 HG00609.hp2 HG00621.hp2 others(142): Show HG00558.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00733.hp2 HG00741.hp1 HG01070.hp2 HG01074.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG01884.hp2 HG01943.hp2 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02145.hp2 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp2 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02572.hp1 HG02602.hp2 HG02615.hp2 HG02622.hp2 HG02630.hp1 HG02717.hp2 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02895.hp2 HG02897.hp2 HG02970.hp2 HG03195.hp1 HG03225.hp1 HG03239.hp1 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04199.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp2 NA18941.hp1 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18954.hp2 NA18960.hp1 NA18962.hp2 NA18964.hp2 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18986.hp2 NA18989.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp2 NA19010.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp2 NA19054.hp1 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19070.hp2 NA19072.hp2 NA19078.hp1 NA19079.hp2 NA19085.hp2 NA19086.hp2 NA19091.hp2 NA19240.hp2 NA20752.hp1 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.379+1568dupA c.379+1568dupA	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174726586
chr5:174726586	C C	CAA CAA	10	a0001c0001t0001g0005 a0001c0001t0001g0023 a0001c0001t0001g0030 others(7): Show a0001c0001t0001g0005 a0001c0001t0001g0023 a0001c0001t0001g0030 a0001c0001t0001g0037 a0001c0001t0001g0054 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0002g0005 a0001c0004t0001g0005	21	HG00280.hp2 HG00673.hp1 HG00673.hp2 others(18): Show HG00280.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp2 HG01099.hp1 HG01952.hp1 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02451.hp1 HG02602.hp1 HG03209.hp2 HG03453.hp1 HG03516.hp2 HG03669.hp2 NA18942.hp2 NA18952.hp2 NA18971.hp1 NA18978.hp1 NA18993.hp1 NA19078.hp2	intron_variant	MODIFIER	c.379+1567_379+1568d others(4): Show c.379+1567_379+1568dupAA	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174726586
chr5:174726586	CA CA	C C	8	a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0003g0057 others(5): Show a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0003g0057 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0002g0036 a0002c0002t0005g0036 a0003c0003t0001g0050	8	HG01168.hp1 HG02451.hp2 HG02896.hp2 others(5): Show HG01168.hp1 HG02451.hp2 HG02896.hp2 HG02976.hp1 HG02976.hp2 HG03516.hp1 NA18986.hp1 NA18989.hp1	intron_variant	MODIFIER	c.379+1568delA c.379+1568delA	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174726586
chr5:174726610	G G	T T	1	a0001c0001t0001g0028 a0001c0001t0001g0028	2	HG01261.hp2 HG03654.hp2 HG01261.hp2 HG03654.hp2	intron_variant	MODIFIER	c.379+1572G>T c.379+1572G>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726610
chr5:174726733	G G	T T	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	HG02683.hp2 HG02683.hp2	intron_variant	MODIFIER	c.379+1695G>T c.379+1695G>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726733
chr5:174726840	G G	C C	1	a0002c0002t0002g0032 a0002c0002t0002g0032	2	HG03540.hp2 NA19030.hp2 HG03540.hp2 NA19030.hp2	intron_variant	MODIFIER	c.379+1802G>C c.379+1802G>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174726840
chr5:174726931	TC TC	T T	3	a0001c0001t0001g0010 a0001c0001t0001g0046 a0001c0001t0001g0052 a0001c0001t0001g0010 a0001c0001t0001g0046 a0001c0001t0001g0052	7	NA18942.hp1 NA18969.hp2 NA18971.hp2 others(4): Show NA18942.hp1 NA18969.hp2 NA18971.hp2 NA18978.hp2 NA18989.hp1 NA19007.hp1 NA19090.hp1	intron_variant	MODIFIER	c.379+1896delC c.379+1896delC	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174726931
chr5:174727061	A A	C C	1	a0002c0002t0004g0074 a0002c0002t0004g0074	1	HG04204.hp1 HG04204.hp1	intron_variant	MODIFIER	c.379+2023A>C c.379+2023A>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727061
chr5:174727070	C C	A A	1	a0001c0001t0001g0082 a0001c0001t0001g0082	1	NA18963.hp2 NA18963.hp2	intron_variant	MODIFIER	c.379+2032C>A c.379+2032C>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727070
chr5:174727070	CA CA	C C	39	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 others(36): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0023 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0015g0001 a0001c0004t0001g0005 a0004c0005t0001g0055	160	HG00280.hp2 HG00558.hp1 HG00609.hp2 others(157): Show HG00280.hp2 HG00558.hp1 HG00609.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG01070.hp2 HG01074.hp1 HG01099.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG01884.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp2 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02970.hp2 HG03195.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03453.hp1 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04199.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp2 NA18954.hp2 NA18960.hp1 NA18962.hp2 NA18964.hp2 NA18965.hp2 NA18969.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18986.hp2 NA18993.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19070.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp2 NA19085.hp2 NA19086.hp2 NA19091.hp2 NA19240.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.379+2042delA c.379+2042delA	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174727070
chr5:174727071	A A	C C	1	a0001c0001t0001g0082 a0001c0001t0001g0082	1	NA18963.hp2 NA18963.hp2	intron_variant	MODIFIER	c.379+2033A>C c.379+2033A>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727071
chr5:174727090	G G	A A	1	a0002c0002t0007g0076 a0002c0002t0007g0076	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.379+2052G>A c.379+2052G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727090
chr5:174727096	T T	C C	9	a0001c0001t0001g0008 a0001c0001t0001g0047 a0002c0002t0002g0077 others(6): Show a0001c0001t0001g0008 a0001c0001t0001g0047 a0002c0002t0002g0077 a0002c0002t0004g0006 a0002c0002t0004g0014 a0002c0002t0004g0074 a0002c0002t0004g0083 a0003c0003t0001g0008 a0003c0003t0001g0050	24	HG00741.hp2 HG01070.hp1 HG01071.hp1 others(21): Show HG00741.hp2 HG01070.hp1 HG01071.hp1 HG01099.hp2 HG01168.hp1 HG01169.hp1 HG01361.hp1 HG01361.hp2 HG01884.hp1 HG01952.hp2 HG02055.hp2 HG02145.hp1 HG02622.hp1 HG02735.hp2 HG02895.hp1 HG03098.hp1 HG03139.hp1 HG03471.hp1 HG03486.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.379+2058T>C c.379+2058T>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727096
chr5:174727169	C C	T T	37	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 others(34): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0018 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0015g0001 a0001c0004t0001g0005 a0004c0005t0001g0055	153	HG00280.hp2 HG00558.hp1 HG00609.hp2 others(150): Show HG00280.hp2 HG00558.hp1 HG00609.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG01070.hp2 HG01074.hp1 HG01099.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG01884.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02486.hp2 HG02523.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02698.hp2 HG02717.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG03225.hp1 HG03239.hp1 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04199.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp2 NA18954.hp2 NA18960.hp1 NA18962.hp2 NA18963.hp2 NA18964.hp2 NA18965.hp2 NA18969.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18986.hp2 NA18993.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19005.hp1 NA19007.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19070.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp2 NA19085.hp2 NA19086.hp2 NA19091.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.380-1990C>T c.380-1990C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727169
chr5:174727181	C C	T T	4	a0001c0001t0001g0011 a0001c0001t0001g0064 a0001c0001t0001g0070 others(1): Show a0001c0001t0001g0011 a0001c0001t0001g0064 a0001c0001t0001g0070 a0001c0001t0012g0011	7	HG02074.hp2 NA18941.hp1 NA18943.hp2 others(4): Show HG02074.hp2 NA18941.hp1 NA18943.hp2 NA18969.hp1 NA18978.hp1 NA18997.hp1 NA19054.hp2	intron_variant	MODIFIER	c.380-1978C>T c.380-1978C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727181
chr5:174727201	G G	A A	1	a0002c0002t0001g0039 a0002c0002t0001g0039	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.380-1958G>A c.380-1958G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727201
chr5:174727243	T T	A A	1	a0001c0001t0001g0018 a0001c0001t0001g0018	3	HG01167.hp1 HG01169.hp2 NA20752.hp2 HG01167.hp1 HG01169.hp2 NA20752.hp2	intron_variant	MODIFIER	c.380-1916T>A c.380-1916T>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727243
chr5:174727303	A A	G G	1	a0002c0002t0002g0077 a0002c0002t0002g0077	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.380-1856A>G c.380-1856A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727303
chr5:174727339	T T	C C	1	a0002c0002t0009g0033 a0002c0002t0009g0033	2	NA18983.hp2 NA18990.hp2 NA18983.hp2 NA18990.hp2	intron_variant	MODIFIER	c.380-1820T>C c.380-1820T>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727339
chr5:174727432	G G	A A	1	a0001c0001t0001g0062 a0001c0001t0001g0062	1	HG01952.hp1 HG01952.hp1	intron_variant	MODIFIER	c.380-1727G>A c.380-1727G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727432
chr5:174727471	A A	C C	1	a0001c0001t0001g0022 a0001c0001t0001g0022	2	HG03239.hp2 HG03927.hp1 HG03239.hp2 HG03927.hp1	intron_variant	MODIFIER	c.380-1688A>C c.380-1688A>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727471
chr5:174727515	A A	G G	94	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(91): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0014g0004 a0001c0001t0015g0001 a0001c0004t0001g0005 a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0078 a0002c0002t0002g0003 a0002c0002t0002g0007 a0002c0002t0002g0019 a0002c0002t0002g0020 a0002c0002t0002g0032 a0002c0002t0002g0036 a0002c0002t0002g0075 a0002c0002t0002g0077 a0002c0002t0002g0079 a0002c0002t0004g0006 a0002c0002t0004g0014 a0002c0002t0004g0015 a0002c0002t0004g0074 a0002c0002t0004g0083 a0002c0002t0005g0003 a0002c0002t0005g0036 a0002c0002t0007g0035 a0002c0002t0007g0076 a0002c0002t0009g0033 a0002c0002t0011g0019 a0002c0002t0013g0045 a0003c0003t0001g0008 a0003c0003t0001g0050 a0004c0005t0001g0055	353	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(350): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18955.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.380-1644A>G c.380-1644A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727515
chr5:174727558	T T	G G	1	a0001c0001t0001g0065 a0001c0001t0001g0065	1	HG03669.hp1 HG03669.hp1	intron_variant	MODIFIER	c.380-1601T>G c.380-1601T>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727558
chr5:174727593	A A	C C	1	a0002c0002t0013g0045 a0002c0002t0013g0045	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.380-1566A>C c.380-1566A>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727593
chr5:174727763	A A	G G	1	a0001c0001t0001g0069 a0001c0001t0001g0069	1	NA18995.hp2 NA18995.hp2	intron_variant	MODIFIER	c.380-1396A>G c.380-1396A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727763
chr5:174727921	A A	G G	2	a0002c0002t0007g0035 a0002c0002t0007g0076 a0002c0002t0007g0035 a0002c0002t0007g0076	3	HG02647.hp1 HG02970.hp1 HG03540.hp1 HG02647.hp1 HG02970.hp1 HG03540.hp1	intron_variant	MODIFIER	c.380-1238A>G c.380-1238A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727921
chr5:174727983	T T	C C	5	a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 others(2): Show a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0014g0004	26	HG00621.hp2 HG01975.hp2 HG02135.hp2 others(23): Show HG00621.hp2 HG01975.hp2 HG02135.hp2 HG02155.hp2 HG03017.hp2 HG03098.hp2 HG03831.hp2 HG03927.hp2 HG04199.hp2 NA18952.hp1 NA18960.hp2 NA18962.hp1 NA18963.hp1 NA18965.hp1 NA18975.hp1 NA18979.hp1 NA18985.hp2 NA18986.hp1 NA18989.hp2 NA18991.hp1 NA18998.hp1 NA19005.hp2 NA19010.hp1 NA19011.hp1 NA19072.hp1 NA19090.hp2	intron_variant	MODIFIER	c.380-1176T>C c.380-1176T>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174727983
chr5:174728019	C C	T T	1	a0002c0002t0002g0079 a0002c0002t0002g0079	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.380-1140C>T c.380-1140C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728019
chr5:174728229	C C	G G	1	a0001c0001t0001g0065 a0001c0001t0001g0065	1	HG03669.hp1 HG03669.hp1	intron_variant	MODIFIER	c.380-930C>G c.380-930C>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728229
chr5:174728235	T T	C C	2	a0002c0002t0001g0038 a0002c0002t0001g0042 a0002c0002t0001g0038 a0002c0002t0001g0042	2	HG02145.hp2 HG02976.hp1 HG02145.hp2 HG02976.hp1	intron_variant	MODIFIER	c.380-924T>C c.380-924T>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728235
chr5:174728244	G G	C C	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.380-915G>C c.380-915G>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728244
chr5:174728375	CTGTAAAA others(49): Show CTGTAAAATGATGTTCAGATTTTATAATCTGTGGACTGGATGCAATGACA GCTTGTG	C C	1	a0001c0001t0001g0048 a0001c0001t0001g0048	1	NA18955.hp1 NA18955.hp1	intron_variant	MODIFIER	c.380-783_380-728del others(56): Show c.380-783_380-728delTGTAAAATGATGTTCAGATTTTATAATCTG TGGACTGGATGCAATGACAGCTTGTG	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728375
chr5:174728427	T T	TG TG	93	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(90): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0014g0004 a0001c0001t0015g0001 a0001c0004t0001g0005 a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0078 a0002c0002t0002g0003 a0002c0002t0002g0007 a0002c0002t0002g0019 a0002c0002t0002g0020 a0002c0002t0002g0032 a0002c0002t0002g0036 a0002c0002t0002g0075 a0002c0002t0002g0077 a0002c0002t0002g0079 a0002c0002t0004g0006 a0002c0002t0004g0014 a0002c0002t0004g0015 a0002c0002t0004g0074 a0002c0002t0004g0083 a0002c0002t0005g0003 a0002c0002t0005g0036 a0002c0002t0007g0035 a0002c0002t0007g0076 a0002c0002t0009g0033 a0002c0002t0011g0019 a0002c0002t0013g0045 a0003c0003t0001g0008 a0003c0003t0001g0050 a0004c0005t0001g0055	352	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(349): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.380-732_380-731ins others(1): Show c.380-732_380-731insG	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728427
chr5:174728525	C C	T T	8	a0002c0002t0002g0077 a0002c0002t0004g0006 a0002c0002t0004g0014 others(5): Show a0002c0002t0002g0077 a0002c0002t0004g0006 a0002c0002t0004g0014 a0002c0002t0004g0015 a0002c0002t0004g0074 a0002c0002t0004g0083 a0002c0002t0009g0033 a0002c0002t0013g0045	22	HG01099.hp2 HG01884.hp1 HG02055.hp2 others(19): Show HG01099.hp2 HG01884.hp1 HG02055.hp2 HG02145.hp1 HG02572.hp1 HG02622.hp1 HG02735.hp2 HG02895.hp1 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03471.hp1 HG03486.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp2 NA18906.hp2 NA18983.hp2 NA18990.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.380-634C>T c.380-634C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728525
chr5:174728622	C C	T T	1	a0001c0001t0001g0026 a0001c0001t0001g0026	2	HG03195.hp1 NA19240.hp2 HG03195.hp1 NA19240.hp2	intron_variant	MODIFIER	c.380-537C>T c.380-537C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728622
chr5:174728779	T T	C C	73	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 others(70): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0014g0004 a0001c0001t0015g0001 a0001c0004t0001g0005 a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0078 a0003c0003t0001g0008 a0003c0003t0001g0050 a0004c0005t0001g0055	283	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(280): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp2 HG04228.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.380-380T>C c.380-380T>C	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728779
chr5:174728791	T T	G G	1	a0001c0001t0003g0056 a0001c0001t0003g0056	1	HG03017.hp2 HG03017.hp2	intron_variant	MODIFIER	c.380-368T>G c.380-368T>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728791
chr5:174728802	G G	GT GT	6	a0002c0002t0002g0077 a0002c0002t0004g0006 a0002c0002t0004g0014 others(3): Show a0002c0002t0002g0077 a0002c0002t0004g0006 a0002c0002t0004g0014 a0002c0002t0004g0015 a0002c0002t0004g0074 a0002c0002t0004g0083	19	HG01099.hp2 HG01884.hp1 HG02055.hp2 others(16): Show HG01099.hp2 HG01884.hp1 HG02055.hp2 HG02145.hp1 HG02622.hp1 HG02735.hp2 HG02895.hp1 HG03098.hp1 HG03130.hp2 HG03139.hp1 HG03471.hp1 HG03486.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp2 NA18906.hp2 NA20129.hp1 NA21309.hp2	intron_variant	MODIFIER	c.380-355dupT c.380-355dupT	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174728802
chr5:174728854	C C	T T	5	a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 others(2): Show a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0014g0004	26	HG00621.hp2 HG01975.hp2 HG02135.hp2 others(23): Show HG00621.hp2 HG01975.hp2 HG02135.hp2 HG02155.hp2 HG03017.hp2 HG03098.hp2 HG03831.hp2 HG03927.hp2 HG04199.hp2 NA18952.hp1 NA18960.hp2 NA18962.hp1 NA18963.hp1 NA18965.hp1 NA18975.hp1 NA18979.hp1 NA18985.hp2 NA18986.hp1 NA18989.hp2 NA18991.hp1 NA18998.hp1 NA19005.hp2 NA19010.hp1 NA19011.hp1 NA19072.hp1 NA19090.hp2	intron_variant	MODIFIER	c.380-305C>T c.380-305C>T	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728854
chr5:174728892	C C	G G	1	a0001c0001t0001g0068 a0001c0001t0001g0068	1	HG02165.hp2 HG02165.hp2	intron_variant	MODIFIER	c.380-267C>G c.380-267C>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728892
chr5:174728967	ATG ATG	A A	4	a0001c0001t0001g0067 a0002c0002t0007g0035 a0002c0002t0007g0076 others(1): Show a0001c0001t0001g0067 a0002c0002t0007g0035 a0002c0002t0007g0076 a0002c0002t0013g0045	5	HG01346.hp2 HG02572.hp1 HG02647.hp1 others(2): Show HG01346.hp2 HG02572.hp1 HG02647.hp1 HG02970.hp1 HG03540.hp1	intron_variant	MODIFIER	c.380-164_380-163del others(2): Show c.380-164_380-163delGT	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174728967
chr5:174728967	ATGTG ATGTG	A A	52	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 others(49): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0014g0004 a0001c0001t0015g0001 a0001c0004t0001g0005 a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0078 a0004c0005t0001g0055	196	HG00280.hp2 HG00558.hp1 HG00609.hp2 others(193): Show HG00280.hp2 HG00558.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG01070.hp2 HG01074.hp1 HG01099.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01358.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG01884.hp2 HG01891.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp2 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02698.hp2 HG02717.hp2 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02976.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03195.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03453.hp1 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp2 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04199.hp1 HG04199.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp2 NA18991.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp1 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19005.hp1 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19012.hp2 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19070.hp2 NA19072.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp2 NA19085.hp2 NA19086.hp2 NA19090.hp2 NA19091.hp2 NA19240.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.380-166_380-163del others(4): Show c.380-166_380-163delGTGT	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174728967
chr5:174728967	ATGTGTG ATGTGTG	A A	9	a0002c0002t0002g0003 a0002c0002t0002g0007 a0002c0002t0002g0020 others(6): Show a0002c0002t0002g0003 a0002c0002t0002g0007 a0002c0002t0002g0020 a0002c0002t0002g0032 a0002c0002t0002g0036 a0002c0002t0002g0075 a0002c0002t0002g0079 a0002c0002t0005g0003 a0002c0002t0005g0036	42	HG00099.hp2 HG00621.hp1 HG00735.hp1 others(39): Show HG00099.hp2 HG00621.hp1 HG00735.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01891.hp2 HG02055.hp1 HG02109.hp2 HG02257.hp1 HG02280.hp2 HG02559.hp1 HG02572.hp2 HG02615.hp1 HG02622.hp2 HG02647.hp2 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02896.hp2 HG02965.hp1 HG03041.hp1 HG03195.hp2 HG03225.hp2 HG03453.hp2 HG03471.hp2 HG03486.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 NA18522.hp1 NA18906.hp1 NA18954.hp1 NA18955.hp2 NA18997.hp2 NA19030.hp1 NA19030.hp2 NA19240.hp1 NA20300.hp2 NA21309.hp1	intron_variant	MODIFIER	c.380-168_380-163del others(6): Show c.380-168_380-163delGTGTGT	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174728967
chr5:174728967	ATGTGTGT others(3): Show ATGTGTGTGTG	A A	2	a0002c0002t0002g0019 a0002c0002t0011g0019 a0002c0002t0002g0019 a0002c0002t0011g0019	3	HG01106.hp1 HG01496.hp1 HG03130.hp1 HG01106.hp1 HG01496.hp1 HG03130.hp1	intron_variant	MODIFIER	c.380-172_380-163del others(10): Show c.380-172_380-163delGTGTGTGTGT	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174728967
chr5:174728970	T T	G G	1	a0002c0002t0013g0045 a0002c0002t0013g0045	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.380-189T>G c.380-189T>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728970
chr5:174728993	G G	A A	3	a0001c0001t0001g0027 a0001c0001t0010g0027 a0002c0002t0013g0045 a0001c0001t0001g0027 a0001c0001t0010g0027 a0002c0002t0013g0045	3	HG00741.hp1 HG01074.hp1 HG02572.hp1 HG00741.hp1 HG01074.hp1 HG02572.hp1	intron_variant	MODIFIER	c.380-166G>A c.380-166G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728993
chr5:174728993	GTGTA GTGTA	G G	2	a0001c0001t0001g0025 a0002c0002t0004g0015 a0001c0001t0001g0025 a0002c0002t0004g0015	6	HG02486.hp1 HG02970.hp2 HG03130.hp2 others(3): Show HG02486.hp1 HG02970.hp2 HG03130.hp2 NA18522.hp2 NA18906.hp2 NA20129.hp1	intron_variant	MODIFIER	c.380-164_380-161del others(4): Show c.380-164_380-161delGTAT	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174728993
chr5:174728995	G G	A A	54	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 others(51): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0002g0001 a0001c0001t0002g0005 a0001c0001t0003g0004 a0001c0001t0003g0013 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0008g0001 a0001c0001t0008g0029 a0001c0001t0010g0027 a0001c0001t0012g0011 a0001c0001t0014g0004 a0001c0001t0015g0001 a0001c0004t0001g0005 a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0078 a0002c0002t0013g0045 a0004c0005t0001g0055	198	HG00280.hp2 HG00558.hp1 HG00609.hp2 others(195): Show HG00280.hp2 HG00558.hp1 HG00609.hp2 HG00621.hp2 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp1 HG01070.hp2 HG01074.hp1 HG01099.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG01884.hp2 HG01891.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp2 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02818.hp2 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02976.hp1 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03195.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03453.hp1 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03516.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03831.hp2 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04184.hp1 HG04199.hp1 HG04199.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp2 NA18941.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18969.hp1 NA18971.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp2 NA18991.hp1 NA18993.hp1 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp1 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19005.hp1 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19012.hp2 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19057.hp1 NA19057.hp2 NA19059.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19070.hp2 NA19072.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp2 NA19085.hp2 NA19086.hp2 NA19090.hp2 NA19091.hp2 NA19240.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.380-164G>A c.380-164G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728995
chr5:174728995	G G	GTA GTA	16	a0001c0001t0001g0002 a0001c0001t0001g0008 a0001c0001t0001g0010 others(13): Show a0001c0001t0001g0002 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0022 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0081 a0003c0003t0001g0008 a0003c0003t0001g0050	80	HG00099.hp1 HG00280.hp1 HG00558.hp2 others(77): Show HG00099.hp1 HG00280.hp1 HG00558.hp2 HG00609.hp1 HG00642.hp2 HG00741.hp2 HG01070.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp2 HG01106.hp2 HG01168.hp1 HG01169.hp1 HG01243.hp2 HG01257.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp1 HG01433.hp2 HG01516.hp2 HG01517.hp2 HG01952.hp2 HG02080.hp1 HG02109.hp1 HG02148.hp1 HG02258.hp1 HG02273.hp1 HG02523.hp2 HG02559.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02723.hp1 HG02886.hp2 HG02965.hp2 HG02976.hp2 HG03139.hp2 HG03209.hp1 HG03239.hp2 HG03491.hp2 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG04184.hp2 HG04204.hp2 HG04228.hp2 NA18747.hp1 NA18941.hp2 NA18942.hp1 NA18948.hp2 NA18955.hp1 NA18964.hp1 NA18969.hp2 NA18971.hp2 NA18978.hp2 NA18989.hp1 NA18990.hp1 NA18991.hp2 NA18993.hp2 NA18998.hp2 NA18999.hp2 NA19004.hp2 NA19007.hp1 NA19010.hp2 NA19011.hp2 NA19043.hp1 NA19059.hp2 NA19062.hp2 NA19063.hp2 NA19066.hp2 NA19070.hp1 NA19072.hp2 NA19079.hp1 NA19085.hp1 NA19086.hp1 NA19090.hp1 NA19091.hp1 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.380-160_380-159dup others(2): Show c.380-160_380-159dupAT	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174728995
chr5:174728995	G G	GTGTA GTGTA	2	a0001c0001t0001g0021 a0001c0001t0001g0047 a0001c0001t0001g0021 a0001c0001t0001g0047	3	HG01361.hp2 HG03017.hp1 NA18974.hp2 HG01361.hp2 HG03017.hp1 NA18974.hp2	intron_variant	MODIFIER	c.380-163_380-162ins others(4): Show c.380-163_380-162insGTAT	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174728995
chr5:174728995	GTA GTA	G G	3	a0002c0002t0002g0077 a0002c0002t0004g0006 a0002c0002t0004g0014 a0002c0002t0002g0077 a0002c0002t0004g0006 a0002c0002t0004g0014	13	HG01099.hp2 HG01884.hp1 HG02055.hp2 others(10): Show HG01099.hp2 HG01884.hp1 HG02055.hp2 HG02145.hp1 HG02622.hp1 HG02895.hp1 HG03098.hp1 HG03139.hp1 HG03471.hp1 HG03486.hp1 HG04228.hp1 HG06807.hp1 NA21309.hp2	intron_variant	MODIFIER	c.380-160_380-159del others(2): Show c.380-160_380-159delAT	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr5	174728995
chr5:174728997	A A	G G	2	a0002c0002t0004g0074 a0002c0002t0004g0083 a0002c0002t0004g0074 a0002c0002t0004g0083	2	HG02735.hp2 HG04204.hp1 HG02735.hp2 HG04204.hp1	intron_variant	MODIFIER	c.380-162A>G c.380-162A>G	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174728997
chr5:174729111	T T	A A	7	a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 others(4): Show a0002c0002t0001g0016 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0078	9	HG01891.hp1 HG02145.hp2 HG02451.hp2 others(6): Show HG01891.hp1 HG02145.hp2 HG02451.hp2 HG02630.hp2 HG02818.hp2 HG02896.hp1 HG02897.hp1 HG02976.hp1 HG03041.hp2	intron_variant	MODIFIER	c.380-48T>A c.380-48T>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174729111
chr5:174729138	G G	A A	1	a0001c0001t0001g0009 a0001c0001t0001g0009	7	HG02015.hp1 HG02132.hp1 NA18612.hp2 others(4): Show HG02015.hp1 HG02132.hp1 NA18612.hp2 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18954.hp2	intron_variant	MODIFIER	c.380-21G>A c.380-21G>A	MSX2	ENSG00000120149.9	transcript	ENST00000239243.7	protein_coding	1/1		chr5	174729138

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🧬 JoGo Online Haplotype Explorer MSX2_chr5_174719582_174735896

JoGo Local Haplotype Explorer (on iGV) MSX2_chr5_174719582_174735896

🧬 Gene Summary

Translation Multiple Alignment View

LD View

AAmino acid (protein) Level Haplotype Info (Total: 4)

CCoding Level Haplotype Info (Total: 5)

TTranscript Level Haplotype Info (Total: 15)

GGenebody Level Haplotype Info (Total: 83)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 5)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 20)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 96)

Haplotype Details by Sample (Haploid Level) (Total: 356)

AAmino acid (protein) Level Variants (Effect to Protein Coding Variants) (Total: 3)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Variants (5'UTR+3'UTR) (Total: 15)

GGenebody Level Haplotype Variants (Intron) (Total: 77)

Genealogies

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Annotation (Repeats)

Annotation (SNP Array)