Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	80712
ensemblid	ENSG00000123576.5
hgncid	14865
symbol	ESX1
name	ESX homeobox 1
refseq_nuc	NM_153448.4
refseq_prot	NP_703149.1
ensembl_nuc	ENST00000372588.4
ensembl_prot	ENSP00000361669.4
mane_status	MANE Select
chr	chrX
start	104250038
end	104254933
strand	-
ver	v1.2
region	chrX:104250038-104254933
region5000	chrX:104245038-104259933
regionname0	ESX1_chrX_104250038_104254933
regionname5000	ESX1_chrX_104245038_104259933

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	406	92	3	11	66	2	10	47	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0002	0/0	415	76	29	13	24	0	10	20	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0003	0/0	406	33	0	7	24	1	1	21	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0004	1/0	406	32	16	5	5	4	1	3	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0005	0/0	397	17	2	5	8	1	1	7	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0006	0/0	415	10	3	2	1	3	1	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0007	0/0	415	7	6	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0008	0/0	406	5	0	4	1	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0009	0/0	397	5	0	2	0	2	1	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0010	0/0	397	3	1	0	0	0	2	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0011	0/0	415	3	3	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0012	0/0	397	3	0	0	3	0	0	3	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0013	0/0	415	2	2	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0014	0/0	424	2	2	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0015	0/0	406	2	0	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0016	0/0	179	1	0	0	1	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0017	0/0	406	1	0	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0018	0/0	415	1	1	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0019	0/0	406	1	1	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0020	0/0	406	1	0	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0021	0/0	397	1	0	0	0	0	1	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0022	0/0	406	1	0	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0023	0/0	415	1	1	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0024	0/0	397	1	0	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0025	0/0	424	1	1	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0026	0/1	397	1	0	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0027	0/0	415	1	0	0	0	0	1	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0028	0/0	406	1	0	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0029	0/0	397	1	0	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0030	0/0	415	1	0	0	1	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0031	0/0	406	1	1	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0032	0/0	397	1	0	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0033	0/0	406	1	0	0	0	0	1	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0034	0/0	406	1	0	0	1	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0035	0/0	74	1	0	0	1	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0036	0/0	10	1	0	0	1	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1221	89	3	11	63	2	10	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0002	0/0	1248	76	29	13	24	0	10	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0003	0/0	1221	33	0	7	24	1	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0004	1/0	1221	32	16	5	5	4	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0005	0/0	1194	17	2	5	8	1	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0006	0/0	1248	10	3	2	1	3	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0007	0/0	1248	7	6	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0008	0/0	1221	5	0	4	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0009	0/0	1194	5	0	2	0	2	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0010	0/0	1194	3	0	0	3	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0011	0/0	1194	3	1	0	0	0	2	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0012	0/0	1248	3	3	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0013	0/0	1221	2	0	2	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0014	0/0	1275	2	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0015	0/0	1248	2	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0016	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0017	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0018	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0019	0/0	1248	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0020	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0021	0/0	1194	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0022	0/0	1248	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0023	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0024	0/1	1194	1	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0025	0/0	1275	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0026	0/0	1194	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0027	0/0	1221	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0028	0/0	1194	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0029	0/0	1248	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0030	0/0	1221	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0031	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0032	0/0	1194	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0033	0/0	1221	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0034	0/0	1248	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0035	0/0	1221	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0036	0/0	1221	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0037	0/0	1223	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0038	0/0	1196	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
c0039	0/0	1222	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	275	297	60	54	138	13	30	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
t0002	0/0	275	13	12	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
t0003	0/0	276	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
t0004	0/0	275	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
t0005	0/0	275	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	63	2	7	44	2	8	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0002	0/0	56	13	12	22	0	9	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0003	0/0	32	0	6	24	1	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0004	0/0	16	2	5	4	4	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0005	0/0	12	2	4	6	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0006	1/0	10	8	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0007	0/0	8	3	1	0	3	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0008	0/0	7	6	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0009	0/0	5	0	2	0	2	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0010	0/0	5	5	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0011	0/0	5	5	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0012	0/0	4	0	4	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0013	0/0	4	0	0	4	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0014	0/0	4	0	1	2	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0015	0/0	3	3	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0016	0/0	3	1	0	1	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0017	0/0	3	0	0	3	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0018	0/0	3	1	0	0	0	2	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0019	0/0	3	0	0	3	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0020	0/0	3	0	0	3	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0021	0/0	2	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0022	0/0	2	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0023	0/0	2	0	2	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0024	0/0	2	0	2	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0025	0/0	2	0	1	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0026	0/0	2	1	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0027	0/0	2	1	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0028	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0029	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0030	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0031	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0032	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0033	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0034	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0035	0/0	1	0	0	0	1	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0036	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0037	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0038	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0039	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0040	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0041	0/0	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0042	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0043	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0044	0/0	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0045	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0046	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0047	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0048	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0049	0/0	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0050	0/0	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0051	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0052	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0053	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0054	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0055	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0056	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0057	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0058	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0059	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0060	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0061	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0062	0/1	1	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0063	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0064	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0065	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0066	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0067	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0068	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0069	0/0	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0070	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0071	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0072	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0073	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0074	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0075	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0076	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
g0077	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1221	89	3	11	63	2	10	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0001c0017	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0001c0018	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0001c0023	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0002c0002	0/0	1248	76	29	13	24	0	10	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0003c0003	0/0	1221	33	0	7	24	1	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0004c0004	1/0	1221	32	16	5	5	4	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0005c0005	0/0	1194	17	2	5	8	1	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0006c0006	0/0	1248	10	3	2	1	3	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0007c0007	0/0	1248	7	6	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0008c0008	0/0	1221	5	0	4	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0009c0009	0/0	1194	5	0	2	0	2	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0010c0011	0/0	1194	3	1	0	0	0	2	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0011c0012	0/0	1248	3	3	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0012c0010	0/0	1194	3	0	0	3	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0013c0015	0/0	1248	2	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0014c0014	0/0	1275	2	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0015c0013	0/0	1221	2	0	2	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0016c0037	0/0	1223	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0017c0036	0/0	1221	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0018c0034	0/0	1248	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0019c0035	0/0	1221	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0020c0031	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0021c0032	0/0	1194	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0022c0020	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0023c0022	0/0	1248	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0024c0021	0/0	1194	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0025c0025	0/0	1275	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0026c0024	0/1	1194	1	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0027c0019	0/0	1248	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0028c0027	0/0	1221	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0029c0026	0/0	1194	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0030c0029	0/0	1248	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0031c0030	0/0	1221	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0032c0028	0/0	1194	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0033c0033	0/0	1221	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0034c0016	0/0	1221	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0035c0038	0/0	1196	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0036c0039	0/0	1222	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1495	88	3	10	63	2	10	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0001c0001t0004	0/0	1495	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0001c0017t0001	0/0	1495	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0001c0018t0001	0/0	1495	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0001c0023t0001	0/0	1495	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0002c0002t0001	0/0	1522	76	29	13	24	0	10	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0003c0003t0001	0/0	1495	33	0	7	24	1	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0004c0004t0001	1/0	1495	32	16	5	5	4	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0005c0005t0001	0/0	1468	17	2	5	8	1	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0006c0006t0001	0/0	1522	9	3	1	1	3	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0006c0006t0005	0/0	1522	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0007c0007t0002	0/0	1522	7	6	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0008c0008t0001	0/0	1495	5	0	4	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0009c0009t0001	0/0	1468	5	0	2	0	2	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0010c0011t0001	0/0	1468	3	1	0	0	0	2	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0011c0012t0002	0/0	1522	3	3	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0012c0010t0001	0/0	1468	3	0	0	3	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0013c0015t0001	0/0	1522	2	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0014c0014t0002	0/0	1549	2	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0015c0013t0001	0/0	1495	2	0	2	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0016c0037t0001	0/0	1497	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0017c0036t0001	0/0	1495	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0018c0034t0001	0/0	1522	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0019c0035t0001	0/0	1495	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0020c0031t0001	0/0	1495	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0021c0032t0001	0/0	1468	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0022c0020t0001	0/0	1495	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0023c0022t0001	0/0	1522	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0024c0021t0001	0/0	1468	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0025c0025t0001	0/0	1549	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0026c0024t0001	0/1	1468	1	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0027c0019t0001	0/0	1522	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0028c0027t0001	0/0	1495	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0029c0026t0001	0/0	1468	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0030c0029t0001	0/0	1522	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0031c0030t0002	0/0	1495	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0032c0028t0001	0/0	1468	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0033c0033t0001	0/0	1495	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0034c0016t0001	0/0	1495	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0035c0038t0001	0/0	1470	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933
a0036c0039t0003	0/0	1497	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	copy fasta	chrX	104245038	104259933

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	63	2	7	44	2	8	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0013	0/0	4	0	0	4	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0019	0/0	3	0	0	3	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0020	0/0	3	0	0	3	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0023	0/0	2	0	2	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0025	0/0	2	0	1	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0026	0/0	2	1	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0038	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0039	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0040	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0041	0/0	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0065	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0067	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0069	0/0	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0073	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0001g0075	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0001t0004g0063	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0017t0001g0057	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0018t0001g0058	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0001c0023t0001g0061	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0002c0002t0001g0002	0/0	56	13	12	22	0	9	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0002c0002t0001g0010	0/0	5	5	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0002c0002t0001g0011	0/0	5	5	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0002c0002t0001g0016	0/0	3	1	0	1	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0002c0002t0001g0027	0/0	2	1	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0002c0002t0001g0031	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0002c0002t0001g0054	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0002c0002t0001g0055	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0002c0002t0001g0070	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0002c0002t0001g0074	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0003c0003t0001g0003	0/0	32	0	6	24	1	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0003c0003t0001g0037	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0004c0004t0001g0004	0/0	16	2	5	4	4	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0004c0004t0001g0006	1/0	10	8	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0004c0004t0001g0022	0/0	2	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0004c0004t0001g0033	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0004c0004t0001g0036	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0004c0004t0001g0068	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0004c0004t0001g0071	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0005c0005t0001g0005	0/0	12	2	4	6	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0005c0005t0001g0014	0/0	4	0	1	2	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0005c0005t0001g0035	0/0	1	0	0	0	1	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0006c0006t0001g0007	0/0	8	3	1	0	3	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0006c0006t0001g0030	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0006c0006t0005g0072	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0007c0007t0002g0008	0/0	7	6	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0008c0008t0001g0012	0/0	4	0	4	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0008c0008t0001g0060	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0009c0009t0001g0009	0/0	5	0	2	0	2	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0010c0011t0001g0018	0/0	3	1	0	0	0	2	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0011c0012t0002g0015	0/0	3	3	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0012c0010t0001g0017	0/0	3	0	0	3	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0013c0015t0001g0043	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0013c0015t0001g0052	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0014c0014t0002g0021	0/0	2	2	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0015c0013t0001g0024	0/0	2	0	2	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0016c0037t0001g0076	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0017c0036t0001g0053	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0018c0034t0001g0051	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0019c0035t0001g0042	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0020c0031t0001g0066	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0021c0032t0001g0049	0/0	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0022c0020t0001g0059	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0023c0022t0001g0034	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0024c0021t0001g0045	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0025c0025t0001g0032	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0026c0024t0001g0062	0/1	1	0	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0027c0019t0001g0044	0/0	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0028c0027t0001g0047	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0029c0026t0001g0046	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0030c0029t0001g0048	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0031c0030t0002g0028	0/0	1	1	0	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0032c0028t0001g0064	0/0	1	0	1	0	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0033c0033t0001g0050	0/0	1	0	0	0	0	1	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0034c0016t0001g0056	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0035c0038t0001g0077	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
a0036c0039t0003g0029	0/0	1	0	0	1	0	0	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0004	c0004	t0001	g0004	EUR	GBR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00099	hp2	a0009	c0009	t0001	g0009	EUR	GBR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00140	hp1	a0003	c0003	t0001	g0003	EUR	GBR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00323	hp1	a0006	c0006	t0001	g0007	EUR	FIN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00323	hp2	a0009	c0009	t0001	g0009	EUR	FIN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00408	hp1	a0002	c0002	t0001	g0002	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00408	hp2	a0001	c0001	t0001	g0025	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00544	hp1	a0001	c0001	t0001	g0065	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00544	hp2	a0003	c0003	t0001	g0003	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00558	hp2	a0001	c0001	t0001	g0073	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00597	hp2	a0003	c0003	t0001	g0003	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00621	hp1	a0001	c0001	t0001	g0013	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00639	hp1	a0006	c0006	t0005	g0072	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00639	hp2	a0004	c0004	t0001	g0004	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00642	hp1	a0008	c0008	t0001	g0012	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00733	hp1	a0001	c0001	t0001	g0025	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00733	hp2	a0003	c0003	t0001	g0003	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00735	hp1	a0002	c0002	t0001	g0002	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00738	hp1	a0004	c0004	t0001	g0004	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00741	hp1	a0001	c0001	t0004	g0063	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG00741	hp2	a0009	c0009	t0001	g0009	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01074	hp1	a0002	c0002	t0001	g0002	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01081	hp2	a0015	c0013	t0001	g0024	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01099	hp1	a0005	c0005	t0001	g0005	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01106	hp1	a0015	c0013	t0001	g0024	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01109	hp1	a0002	c0002	t0001	g0002	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01167	hp1	a0001	c0001	t0001	g0023	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01168	hp2	a0002	c0002	t0001	g0002	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01169	hp1	a0001	c0001	t0001	g0023	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01169	hp2	a0002	c0002	t0001	g0002	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01175	hp1	a0004	c0004	t0001	g0004	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01175	hp2	a0003	c0003	t0001	g0003	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01192	hp1	a0006	c0006	t0001	g0007	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01243	hp1	a0007	c0007	t0002	g0008	AMR	PUR	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01256	hp1	a0003	c0003	t0001	g0003	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01257	hp1	a0032	c0028	t0001	g0064	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01257	hp2	a0002	c0002	t0001	g0002	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01258	hp1	a0002	c0002	t0001	g0002	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01346	hp1	a0005	c0005	t0001	g0014	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01358	hp1	a0009	c0009	t0001	g0009	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01361	hp1	a0008	c0008	t0001	g0012	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01361	hp2	a0002	c0002	t0001	g0027	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01433	hp1	a0002	c0002	t0001	g0002	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01496	hp1	a0005	c0005	t0001	g0005	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01496	hp2	a0008	c0008	t0001	g0012	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01515	hp1	a0004	c0004	t0001	g0004	EUR	IBS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01516	hp1	a0006	c0006	t0001	g0007	EUR	IBS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01516	hp2	a0004	c0004	t0001	g0004	EUR	IBS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01517	hp1	a0004	c0004	t0001	g0004	EUR	IBS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01517	hp2	a0006	c0006	t0001	g0007	EUR	IBS	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01884	hp1	a0004	c0004	t0001	g0004	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01884	hp2	a0002	c0002	t0001	g0002	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01891	hp1	a0025	c0025	t0001	g0032	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01891	hp2	a0004	c0004	t0001	g0068	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01928	hp1	a0003	c0003	t0001	g0003	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01934	hp1	a0002	c0002	t0001	g0002	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01943	hp1	a0024	c0021	t0001	g0045	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01952	hp1	a0002	c0002	t0001	g0002	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01978	hp1	a0002	c0002	t0001	g0002	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01978	hp2	a0017	c0036	t0001	g0053	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01981	hp1	a0004	c0004	t0001	g0004	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01981	hp2	a0003	c0003	t0001	g0003	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01993	hp1	a0005	c0005	t0001	g0005	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01993	hp2	a0002	c0002	t0001	g0002	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02004	hp1	a0005	c0005	t0001	g0005	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02004	hp2	a0029	c0026	t0001	g0046	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02040	hp1	a0002	c0002	t0001	g0074	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02055	hp1	a0013	c0015	t0001	g0052	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02056	hp1	a0001	c0001	t0001	g0013	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02071	hp1	a0022	c0020	t0001	g0059	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02080	hp1	a0001	c0001	t0001	g0038	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02083	hp1	a0005	c0005	t0001	g0005	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02135	hp1	a0004	c0004	t0001	g0004	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02145	hp1	a0007	c0007	t0002	g0008	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02148	hp1	a0028	c0027	t0001	g0047	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02148	hp2	a0008	c0008	t0001	g0012	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02155	hp1	a0002	c0002	t0001	g0002	EAS	CDX	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02155	hp2	a0001	c0001	t0001	g0013	EAS	CDX	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02165	hp2	a0020	c0031	t0001	g0066	EAS	CDX	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02257	hp1	a0002	c0002	t0001	g0002	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02257	hp2	a0002	c0002	t0001	g0002	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02258	hp1	a0004	c0004	t0001	g0071	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02280	hp1	a0019	c0035	t0001	g0042	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02280	hp2	a0002	c0002	t0001	g0002	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02293	hp1	a0003	c0003	t0001	g0037	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02293	hp2	a0004	c0004	t0001	g0004	AMR	PEL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02523	hp1	a0003	c0003	t0001	g0003	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02523	hp2	a0004	c0004	t0001	g0006	EAS	KHV	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02572	hp1	a0002	c0002	t0001	g0002	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02622	hp1	a0007	c0007	t0002	g0008	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02622	hp2	a0014	c0014	t0002	g0021	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02630	hp1	a0002	c0002	t0001	g0002	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02630	hp2	a0002	c0002	t0001	g0010	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02647	hp1	a0004	c0004	t0001	g0006	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02683	hp1	a0010	c0011	t0001	g0018	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02698	hp1	a0002	c0002	t0001	g0002	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02717	hp1	a0002	c0002	t0001	g0055	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02723	hp1	a0002	c0002	t0001	g0016	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02723	hp2	a0018	c0034	t0001	g0051	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02735	hp1	a0004	c0004	t0001	g0004	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02738	hp1	a0027	c0019	t0001	g0044	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02809	hp1	a0002	c0002	t0001	g0011	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02809	hp2	a0004	c0004	t0001	g0006	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02818	hp1	a0002	c0002	t0001	g0054	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02818	hp2	a0002	c0002	t0001	g0002	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02886	hp1	a0004	c0004	t0001	g0033	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02886	hp2	a0002	c0002	t0001	g0011	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02895	hp1	a0004	c0004	t0001	g0022	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02897	hp1	a0002	c0002	t0001	g0027	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02897	hp2	a0004	c0004	t0001	g0022	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02922	hp1	a0031	c0030	t0002	g0028	AFR	ESN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02922	hp2	a0007	c0007	t0002	g0008	AFR	ESN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02965	hp1	a0006	c0006	t0001	g0007	AFR	ESN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02970	hp1	a0002	c0002	t0001	g0010	AFR	ESN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02970	hp2	a0007	c0007	t0002	g0008	AFR	ESN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02976	hp1	a0002	c0002	t0001	g0002	AFR	ESN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02976	hp2	a0023	c0022	t0001	g0034	AFR	ESN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03017	hp1	a0002	c0002	t0001	g0002	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03041	hp1	a0002	c0002	t0001	g0002	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03041	hp2	a0001	c0001	t0001	g0001	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03098	hp1	a0004	c0004	t0001	g0006	AFR	MSL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03130	hp1	a0006	c0006	t0001	g0007	AFR	ESN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03139	hp1	a0005	c0005	t0001	g0005	AFR	ESN	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03209	hp1	a0004	c0004	t0001	g0036	AFR	MSL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03225	hp1	a0004	c0004	t0001	g0006	AFR	MSL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03239	hp1	a0006	c0006	t0001	g0007	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03239	hp2	a0033	c0033	t0001	g0050	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03453	hp1	a0002	c0002	t0001	g0010	AFR	MSL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03453	hp2	a0011	c0012	t0002	g0015	AFR	MSL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03486	hp1	a0014	c0014	t0002	g0021	AFR	MSL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03486	hp2	a0004	c0004	t0001	g0006	AFR	MSL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03490	hp1	a0010	c0011	t0001	g0018	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03540	hp1	a0002	c0002	t0001	g0002	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03540	hp2	a0007	c0007	t0002	g0008	AFR	GWD	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03579	hp1	a0002	c0002	t0001	g0002	AFR	MSL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03654	hp1	a0001	c0001	t0001	g0069	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03688	hp1	a0003	c0003	t0001	g0003	SAS	STU	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03704	hp1	a0002	c0002	t0001	g0002	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03704	hp2	a0009	c0009	t0001	g0009	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03710	hp1	a0002	c0002	t0001	g0002	SAS	PJL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03834	hp1	a0002	c0002	t0001	g0016	SAS	BEB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03927	hp1	a0005	c0005	t0001	g0014	SAS	BEB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03927	hp2	a0001	c0001	t0001	g0041	SAS	BEB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG04115	hp1	a0002	c0002	t0001	g0002	SAS	STU	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG04184	hp1	a0002	c0002	t0001	g0002	SAS	BEB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG04199	hp1	a0002	c0002	t0001	g0002	SAS	STU	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG04204	hp1	a0002	c0002	t0001	g0002	SAS	STU	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG04228	hp1	a0002	c0002	t0001	g0002	SAS	STU	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18522	hp1	a0011	c0012	t0002	g0015	AFR	YRI	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18612	hp1	a0002	c0002	t0001	g0002	EAS	CHB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18906	hp1	a0006	c0006	t0001	g0007	AFR	YRI	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18906	hp2	a0002	c0002	t0001	g0011	AFR	YRI	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18941	hp1	a0034	c0016	t0001	g0056	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18945	hp1	a0005	c0005	t0001	g0005	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18946	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18946	hp2	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18947	hp2	a0005	c0005	t0001	g0005	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18949	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18949	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18951	hp2	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18952	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18953	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18957	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18957	hp2	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18959	hp1	a0004	c0004	t0001	g0004	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18960	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18961	hp1	a0004	c0004	t0001	g0004	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18962	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18963	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18963	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18964	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18964	hp2	a0008	c0008	t0001	g0060	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18965	hp1	a0012	c0010	t0001	g0017	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18966	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18967	hp1	a0001	c0001	t0001	g0020	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18968	hp1	a0001	c0001	t0001	g0026	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18968	hp2	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18969	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18970	hp1	a0005	c0005	t0001	g0005	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18974	hp1	a0016	c0037	t0001	g0076	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18975	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18975	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18977	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18979	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18980	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18982	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18984	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18987	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18987	hp2	a0001	c0001	t0001	g0039	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18988	hp1	a0001	c0001	t0001	g0019	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18989	hp1	a0001	c0001	t0001	g0019	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18990	hp1	a0001	c0001	t0001	g0019	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18992	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18992	hp2	a0005	c0005	t0001	g0014	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18993	hp1	a0005	c0005	t0001	g0005	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18993	hp2	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18994	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18998	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18998	hp2	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19000	hp1	a0004	c0004	t0001	g0004	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19002	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19004	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19006	hp1	a0001	c0001	t0001	g0075	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19007	hp1	a0002	c0002	t0001	g0016	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19009	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19010	hp1	a0001	c0018	t0001	g0058	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19011	hp1	a0001	c0023	t0001	g0061	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19011	hp2	a0030	c0029	t0001	g0048	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19012	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19030	hp1	a0001	c0001	t0001	g0026	AFR	LWK	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19030	hp2	a0002	c0002	t0001	g0011	AFR	LWK	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19043	hp1	a0002	c0002	t0001	g0010	AFR	LWK	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19056	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19058	hp1	a0001	c0001	t0001	g0020	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19060	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19062	hp1	a0001	c0017	t0001	g0057	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19063	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19064	hp2	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19065	hp1	a0001	c0001	t0001	g0013	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19065	hp2	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19066	hp1	a0012	c0010	t0001	g0017	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19067	hp1	a0035	c0038	t0001	g0077	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19068	hp1	a0001	c0001	t0001	g0040	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19070	hp1	a0001	c0001	t0001	g0067	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19072	hp1	a0036	c0039	t0003	g0029	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19074	hp1	a0005	c0005	t0001	g0014	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19074	hp2	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19078	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19078	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19080	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19080	hp2	a0001	c0001	t0001	g0020	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19083	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19084	hp2	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19085	hp1	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19087	hp2	a0003	c0003	t0001	g0003	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19088	hp1	a0002	c0002	t0001	g0002	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19089	hp1	a0005	c0005	t0001	g0005	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19091	hp1	a0006	c0006	t0001	g0030	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19240	hp1	a0002	c0002	t0001	g0011	AFR	YRI	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA19240	hp2	a0002	c0002	t0001	g0070	AFR	YRI	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA20129	hp1	a0005	c0005	t0001	g0005	AFR	ASW	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA20129	hp2	a0001	c0001	t0001	g0001	AFR	ASW	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA20752	hp1	a0005	c0005	t0001	g0035	EUR	TSI	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA20905	hp1	a0021	c0032	t0001	g0049	SAS	GIH	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01123	hp1	a0001	c0001	t0001	g0001	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG01123	hp2	a0003	c0003	t0001	g0003	AMR	CLM	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02109	hp1	a0004	c0004	t0001	g0006	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02109	hp2	a0002	c0002	t0001	g0010	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02486	hp1	a0002	c0002	t0001	g0031	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02559	hp1	a0004	c0004	t0001	g0006	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG02559	hp2	a0007	c0007	t0002	g0008	AFR	ACB	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG03471	hp1	a0011	c0012	t0002	g0015	AFR	MSL	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG06807	hp1	a0004	c0004	t0001	g0006	AFR	USA	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
HG06807	hp2	a0013	c0015	t0001	g0043	AFR	USA	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA18955	hp1	a0012	c0010	t0001	g0017	EAS	JPT	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA20300	hp1	a0002	c0002	t0001	g0002	AFR	USA	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA20300	hp2	a0010	c0011	t0001	g0018	AFR	USA	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA21309	hp1	a0004	c0004	t0001	g0004	AFR	LWK	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
NA21309	hp2	a0002	c0002	t0001	g0002	AFR	LWK	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
homoSapiens_chm13v2	hp1	a0026	c0024	t0001	g0062	REF	REF	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933
homoSapiens_grch38	hp1	a0004	c0004	t0001	g0006	REF	REF	ESX1_chrX_104245038_104259933	ESX1	chrX	104245038	104259933

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:104250317	T T	TGGGTGGC others(20): Show TGGGTGGCACAGGCGCCATGGGCGGCCC	2	a0007 a0014 a0007 a0014	9	HG01243.hp1 HG02145.hp1 HG02559.hp2 others(6): Show HG01243.hp1 HG02145.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02922.hp2 HG02970.hp2 HG03486.hp1 HG03540.hp2	conservative_inframe_insertion	MODERATE	c.1131_1132insGGGCCG others(21): Show c.1131_1132insGGGCCGCCCATGGCGCCTGTGCCACCC	p.Pro377_Arg378insGl others(25): Show p.Pro377_Arg378insGlyProProMetAlaProValProPro	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1215/1495	1131/1221	377/406	chrX	104250317
chrX:104250317	T T	TGGGTGGC others(20): Show TGGGTGGCAGAGGCGCCATGGGCGGCCC	5	a0002 a0018 a0023 others(2): Show a0002 a0018 a0023 a0027 a0030	80	HG00408.hp1 HG00735.hp1 HG01074.hp1 others(77): Show HG00408.hp1 HG00735.hp1 HG01074.hp1 HG01109.hp1 HG01168.hp2 HG01169.hp2 HG01257.hp2 HG01258.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp2 HG01934.hp1 HG01952.hp1 HG01978.hp1 HG01993.hp2 HG02040.hp1 HG02109.hp2 HG02155.hp1 HG02257.hp1 HG02257.hp2 HG02280.hp2 HG02486.hp1 HG02572.hp1 HG02630.hp1 HG02630.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02897.hp1 HG02970.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03453.hp1 HG03540.hp1 HG03579.hp1 HG03704.hp1 HG03710.hp1 HG03834.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18906.hp2 NA18949.hp1 NA18952.hp1 NA18957.hp1 NA18963.hp1 NA18964.hp1 NA18968.hp2 NA18980.hp1 NA18987.hp1 NA18992.hp1 NA18993.hp2 NA18998.hp1 NA19002.hp1 NA19004.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp2 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19063.hp1 NA19064.hp2 NA19080.hp1 NA19088.hp1 NA19240.hp1 NA19240.hp2 NA20300.hp1 NA21309.hp2	conservative_inframe_insertion	MODERATE	c.1105_1131dupGGGCCG others(21): Show c.1105_1131dupGGGCCGCCCATGGCGCCTCTGCCACCC	p.Pro377_Arg378insGl others(25): Show p.Pro377_Arg378insGlyProProMetAlaProLeuProPro	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1215/1495	1131/1221	377/406	chrX	104250317
chrX:104250317	TGGGTGGC others(20): Show TGGGTGGCAGAGGCGCCATGGGCGGCCC	T T	4	a0005 a0009 a0026 others(1): Show a0005 a0009 a0026 a0032	24	HG00099.hp2 HG00323.hp2 HG00741.hp2 others(21): Show HG00099.hp2 HG00323.hp2 HG00741.hp2 HG01099.hp1 HG01257.hp1 HG01346.hp1 HG01358.hp1 HG01496.hp1 HG01993.hp1 HG02004.hp1 HG02083.hp1 HG03139.hp1 HG03704.hp2 HG03927.hp1 NA18945.hp1 NA18947.hp2 NA18970.hp1 NA18992.hp2 NA18993.hp1 NA19074.hp1 NA19089.hp1 NA20129.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	conservative_inframe_deletion	MODERATE	c.1105_1131delGGGCCG others(21): Show c.1105_1131delGGGCCGCCCATGGCGCCTCTGCCACCC	p.Gly369_Pro377del p.Gly369_Pro377del	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1215/1495	1105/1221	369/406	chrX	104250317
chrX:104250326	G G	C C	2	a0011 a0031 a0011 a0031	4	HG02922.hp1 HG03453.hp2 HG03471.hp1 others(1): Show HG02922.hp1 HG03453.hp2 HG03471.hp1 NA18522.hp1	missense_variant	MODERATE	c.1123C>G c.1123C>G	p.Leu375Val p.Leu375Val	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1207/1495	1123/1221	375/406	chrX	104250326
chrX:104250389	T T	TG TG	1	a0036 a0036	1	NA19072.hp1 NA19072.hp1	frameshift_variant	HIGH	c.1059dupC c.1059dupC	p.Met354fs p.Met354fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1143/1495	1059/1221	353/406	chrX	104250389
chrX:104250395	G G	GC GC	1	a0016 a0016	1	NA18974.hp1 NA18974.hp1	frameshift_variant	HIGH	c.1053dupG c.1053dupG	p.Pro352fs p.Pro352fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1137/1495	1053/1221	351/406	chrX	104250395
chrX:104250407	G G	C C	7	a0001 a0019 a0020 others(4): Show a0001 a0019 a0020 a0022 a0026 a0034 a0036	98	HG00280.hp1 HG00408.hp2 HG00544.hp1 others(95): Show HG00280.hp1 HG00408.hp2 HG00544.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG00733.hp1 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01081.hp1 HG01123.hp1 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01255.hp1 HG01346.hp2 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02132.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02280.hp1 HG02602.hp1 HG02683.hp2 HG03041.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03834.hp2 HG03927.hp2 HG03942.hp1 HG04184.hp2 NA18747.hp1 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18946.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18963.hp2 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18971.hp1 NA18975.hp1 NA18975.hp2 NA18979.hp2 NA18980.hp2 NA18986.hp1 NA18987.hp2 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18995.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19030.hp1 NA19058.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp2 NA19082.hp1 NA19084.hp1 NA19084.hp2 NA19086.hp1 NA19087.hp1 NA20129.hp2 NA20805.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.1042C>G c.1042C>G	p.Leu348Val p.Leu348Val	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1126/1495	1042/1221	348/406	chrX	104250407
chrX:104250409	G G	C C	7	a0001 a0019 a0020 others(4): Show a0001 a0019 a0020 a0022 a0026 a0034 a0036	98	HG00280.hp1 HG00408.hp2 HG00544.hp1 others(95): Show HG00280.hp1 HG00408.hp2 HG00544.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG00733.hp1 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01081.hp1 HG01123.hp1 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01255.hp1 HG01346.hp2 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02132.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02280.hp1 HG02602.hp1 HG02683.hp2 HG03041.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03834.hp2 HG03927.hp2 HG03942.hp1 HG04184.hp2 NA18747.hp1 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18946.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18963.hp2 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18971.hp1 NA18975.hp1 NA18975.hp2 NA18979.hp2 NA18980.hp2 NA18986.hp1 NA18987.hp2 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18995.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19030.hp1 NA19058.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp2 NA19082.hp1 NA19084.hp1 NA19084.hp2 NA19086.hp1 NA19087.hp1 NA20129.hp2 NA20805.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.1040C>G c.1040C>G	p.Pro347Arg p.Pro347Arg	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1124/1495	1040/1221	347/406	chrX	104250409
chrX:104250409	G G	GGCGCCAT others(20): Show GGCGCCATGGGCGGCCCGGGTGGCACAC	4	a0006 a0011 a0013 others(1): Show a0006 a0011 a0013 a0014	17	HG00323.hp1 HG00639.hp1 HG01192.hp1 others(14): Show HG00323.hp1 HG00639.hp1 HG01192.hp1 HG01516.hp1 HG01517.hp2 HG02055.hp1 HG02622.hp2 HG02965.hp1 HG03130.hp1 HG03239.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA19091.hp1	conservative_inframe_insertion	MODERATE	c.1013_1039dupGTGTGC others(21): Show c.1013_1039dupGTGTGCCACCCGGGCCGCCCATGGCGC	p.Arg338_Ala346dup p.Arg338_Ala346dup	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1123/1495	1039/1221	347/406	chrX	104250409
chrX:104250409	G G	GGCGCCAT others(47): Show GGCGCCATGGGCGGCCCGGGTGGCAGAGGCGCCATGGGCGGCCCGGGTGG CACAC	1	a0025 a0025	1	HG01891.hp1 HG01891.hp1	conservative_inframe_insertion	MODERATE	c.1039_1040insGTGTGC others(48): Show c.1039_1040insGTGTGCCACCCGGGCCGCCCATGGCGCCTCTGCCAC CCGGGCCGCCCATGGCGC	p.Ala346_Pro347insAr others(52): Show p.Ala346_Pro347insArgValProProGlyProProMetAlaProLe uProProGlyProProMetAla	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1123/1495	1039/1221	347/406	chrX	104250409
chrX:104250409	GGCGCCAT others(20): Show GGCGCCATGGGCGGCCCGGGTGGCACAC	G G	1	a0024 a0024	1	HG01943.hp1 HG01943.hp1	disruptive_inframe_deletion	MODERATE	c.1013_1039delGTGTGC others(21): Show c.1013_1039delGTGTGCCACCCGGGCCGCCCATGGCGC	p.Arg338_Ala346del p.Arg338_Ala346del	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1123/1495	1013/1221	338/406	chrX	104250409
chrX:104250434	C C	G G	11	a0003 a0008 a0012 others(8): Show a0003 a0008 a0012 a0015 a0016 a0017 a0023 a0028 a0029 a0033 a0035	50	HG00140.hp1 HG00544.hp2 HG00597.hp2 others(47): Show HG00140.hp1 HG00544.hp2 HG00597.hp2 HG00642.hp1 HG00733.hp2 HG01081.hp2 HG01106.hp1 HG01123.hp2 HG01175.hp2 HG01256.hp1 HG01361.hp1 HG01496.hp2 HG01928.hp1 HG01978.hp2 HG01981.hp2 HG02004.hp2 HG02148.hp1 HG02148.hp2 HG02293.hp1 HG02523.hp1 HG02976.hp2 HG03239.hp2 HG03688.hp1 NA18946.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18962.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18969.hp1 NA18974.hp1 NA18977.hp1 NA18979.hp1 NA18982.hp1 NA18984.hp1 NA18994.hp1 NA18998.hp2 NA19012.hp1 NA19060.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19074.hp2 NA19083.hp1 NA19085.hp1 NA19087.hp2	missense_variant	MODERATE	c.1015G>C c.1015G>C	p.Val339Leu p.Val339Leu	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1099/1495	1015/1221	339/406	chrX	104250434
chrX:104250436	C C	G G	11	a0003 a0008 a0012 others(8): Show a0003 a0008 a0012 a0015 a0016 a0017 a0023 a0028 a0029 a0033 a0035	50	HG00140.hp1 HG00544.hp2 HG00597.hp2 others(47): Show HG00140.hp1 HG00544.hp2 HG00597.hp2 HG00642.hp1 HG00733.hp2 HG01081.hp2 HG01106.hp1 HG01123.hp2 HG01175.hp2 HG01256.hp1 HG01361.hp1 HG01496.hp2 HG01928.hp1 HG01978.hp2 HG01981.hp2 HG02004.hp2 HG02148.hp1 HG02148.hp2 HG02293.hp1 HG02523.hp1 HG02976.hp2 HG03239.hp2 HG03688.hp1 NA18946.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18962.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18969.hp1 NA18974.hp1 NA18977.hp1 NA18979.hp1 NA18982.hp1 NA18984.hp1 NA18994.hp1 NA18998.hp2 NA19012.hp1 NA19060.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19074.hp2 NA19083.hp1 NA19085.hp1 NA19087.hp2	missense_variant	MODERATE	c.1013G>C c.1013G>C	p.Arg338Pro p.Arg338Pro	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1097/1495	1013/1221	338/406	chrX	104250436
chrX:104250461	C C	G G	1	a0028 a0028	1	HG02148.hp1 HG02148.hp1	missense_variant	MODERATE	c.988G>C c.988G>C	p.Val330Leu p.Val330Leu	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1072/1495	988/1221	330/406	chrX	104250461
chrX:104250463	C C	G G	2	a0022 a0028 a0022 a0028	2	HG02071.hp1 HG02148.hp1 HG02071.hp1 HG02148.hp1	missense_variant	MODERATE	c.986G>C c.986G>C	p.Arg329Pro p.Arg329Pro	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1070/1495	986/1221	329/406	chrX	104250463
chrX:104250463	CGCGCCAT others(20): Show CGCGCCATGGGCGGCCCGGGTGGCACAG	C C	2	a0010 a0029 a0010 a0029	4	HG02004.hp2 HG02683.hp1 HG03490.hp1 others(1): Show HG02004.hp2 HG02683.hp1 HG03490.hp1 NA20300.hp2	disruptive_inframe_deletion	MODERATE	c.959_985delCTGTGCCA others(19): Show c.959_985delCTGTGCCACCCGGGCCGCCCATGGCGC	p.Pro320_Ala328del p.Pro320_Ala328del	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1069/1495	959/1221	320/406	chrX	104250463
chrX:104250482	G G	T T	1	a0027 a0027	1	HG02738.hp1 HG02738.hp1	missense_variant	MODERATE	c.967C>A c.967C>A	p.Pro323Thr p.Pro323Thr	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1051/1495	967/1221	323/406	chrX	104250482
chrX:104250482	GTGGCACA others(20): Show GTGGCACAGGCGCCATGGGCGGCCCGGT	G G	1	a0021 a0021	1	NA20905.hp1 NA20905.hp1	conservative_inframe_deletion	MODERATE	c.940_966delACCGGGCC others(19): Show c.940_966delACCGGGCCGCCCATGGCGCCTGTGCCA	p.Thr314_Pro322del p.Thr314_Pro322del	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1050/1495	940/1221	314/406	chrX	104250482
chrX:104250490	G G	C C	13	a0003 a0007 a0011 others(10): Show a0003 a0007 a0011 a0012 a0014 a0015 a0016 a0028 a0030 a0031 a0032 a0033 a0035	57	HG00140.hp1 HG00544.hp2 HG00597.hp2 others(54): Show HG00140.hp1 HG00544.hp2 HG00597.hp2 HG00733.hp2 HG01081.hp2 HG01106.hp1 HG01123.hp2 HG01175.hp2 HG01243.hp1 HG01256.hp1 HG01257.hp1 HG01928.hp1 HG01981.hp2 HG02145.hp1 HG02148.hp1 HG02293.hp1 HG02523.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03540.hp2 HG03688.hp1 NA18522.hp1 NA18946.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18957.hp2 NA18960.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18969.hp1 NA18974.hp1 NA18977.hp1 NA18979.hp1 NA18982.hp1 NA18984.hp1 NA18994.hp1 NA18998.hp2 NA19011.hp2 NA19012.hp1 NA19060.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19074.hp2 NA19083.hp1 NA19085.hp1 NA19087.hp2	missense_variant	MODERATE	c.959C>G c.959C>G	p.Pro320Arg p.Pro320Arg	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1043/1495	959/1221	320/406	chrX	104250490
chrX:104250509	T T	G G	3	a0015 a0020 a0033 a0015 a0020 a0033	4	HG01081.hp2 HG01106.hp1 HG02165.hp2 others(1): Show HG01081.hp2 HG01106.hp1 HG02165.hp2 HG03239.hp2	missense_variant	MODERATE	c.940A>C c.940A>C	p.Thr314Pro p.Thr314Pro	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1024/1495	940/1221	314/406	chrX	104250509
chrX:104250509	TTGGCACA others(20): Show TTGGCACAGGCGCCATGGGCGGCCAGGG	T T	2	a0012 a0035 a0012 a0035	4	NA18955.hp1 NA18965.hp1 NA19066.hp1 others(1): Show NA18955.hp1 NA18965.hp1 NA19066.hp1 NA19067.hp1	conservative_inframe_deletion	MODERATE	c.913_939delCCCTGGCC others(19): Show c.913_939delCCCTGGCCGCCCATGGCGCCTGTGCCA	p.Pro305_Pro313del p.Pro305_Pro313del	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1023/1495	913/1221	305/406	chrX	104250509
chrX:104250517	G G	C C	1	a0033 a0033	1	HG03239.hp2 HG03239.hp2	missense_variant	MODERATE	c.932C>G c.932C>G	p.Pro311Arg p.Pro311Arg	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1016/1495	932/1221	311/406	chrX	104250517
chrX:104250533	A A	C C	1	a0015 a0015	2	HG01081.hp2 HG01106.hp1 HG01081.hp2 HG01106.hp1	missense_variant	MODERATE	c.916T>G c.916T>G	p.Trp306Gly p.Trp306Gly	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1000/1495	916/1221	306/406	chrX	104250533
chrX:104250536	G G	T T	1	a0015 a0015	2	HG01081.hp2 HG01106.hp1 HG01081.hp2 HG01106.hp1	missense_variant	MODERATE	c.913C>A c.913C>A	p.Pro305Thr p.Pro305Thr	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	997/1495	913/1221	305/406	chrX	104250536
chrX:104250575	C C	T T	1	a0034 a0034	1	NA18941.hp1 NA18941.hp1	missense_variant	MODERATE	c.874G>A c.874G>A	p.Ala292Thr p.Ala292Thr	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	958/1495	874/1221	292/406	chrX	104250575
chrX:104250608	G G	A A	3	a0013 a0018 a0019 a0013 a0018 a0019	4	HG02055.hp1 HG02280.hp1 HG02723.hp2 others(1): Show HG02055.hp1 HG02280.hp1 HG02723.hp2 HG06807.hp2	missense_variant	MODERATE	c.841C>T c.841C>T	p.Arg281Cys p.Arg281Cys	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	925/1495	841/1221	281/406	chrX	104250608
chrX:104250611	A A	G G	1	a0017 a0017	1	HG01978.hp2 HG01978.hp2	missense_variant	MODERATE	c.838T>C c.838T>C	p.Ser280Pro p.Ser280Pro	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	922/1495	838/1221	280/406	chrX	104250611
chrX:104250871	T T	C C	1	a0009 a0009	5	HG00099.hp2 HG00323.hp2 HG00741.hp2 others(2): Show HG00099.hp2 HG00323.hp2 HG00741.hp2 HG01358.hp1 HG03704.hp2	missense_variant	MODERATE	c.578A>G c.578A>G	p.Lys193Arg p.Lys193Arg	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	662/1495	578/1221	193/406	chrX	104250871
chrX:104254161	C C	CA CA	1	a0016 a0016	1	NA18974.hp1 NA18974.hp1	frameshift_variant	HIGH	c.498dupT c.498dupT	p.Val167fs p.Val167fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/4	582/1495	498/1221	166/406	chrX	104254161
chrX:104254219	C C	CG CG	1	a0036 a0036	1	NA19072.hp1 NA19072.hp1	frameshift_variant	HIGH	c.440dupC c.440dupC	p.Gln148fs p.Gln148fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/4	524/1495	440/1221	147/406	chrX	104254219
chrX:104254261	T T	TG TG	1	a0035 a0035	1	NA19067.hp1 NA19067.hp1	frameshift_variant	HIGH	c.398dupC c.398dupC	p.Gln134fs p.Gln134fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/4	482/1495	398/1221	133/406	chrX	104254261
chrX:104254299	GC GC	G G	1	a0035 a0035	1	NA19067.hp1 NA19067.hp1	frameshift_variant	HIGH	c.360delG c.360delG	p.Pro121fs p.Pro121fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/4	444/1495	360/1221	120/406	chrX	104254299
chrX:104254316	TG TG	T T	1	a0036 a0036	1	NA19072.hp1 NA19072.hp1	frameshift_variant	HIGH	c.343delC c.343delC	p.Gln115fs p.Gln115fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/4	427/1495	343/1221	115/406	chrX	104254316
chrX:104254371	G G	GT GT	1	a0035 a0035	1	NA19067.hp1 NA19067.hp1	frameshift_variant	HIGH	c.288dupA c.288dupA	p.Gln97fs p.Gln97fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/4	372/1495	288/1221	96/406	chrX	104254371
chrX:104254442	T T	TC TC	1	a0035 a0035	1	NA19067.hp1 NA19067.hp1	frameshift_variant	HIGH	c.217dupG c.217dupG	p.Asp73fs p.Asp73fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/4	301/1495	217/1221	73/406	chrX	104254442
chrX:104254464	AC AC	A A	1	a0036 a0036	1	NA19072.hp1 NA19072.hp1	frameshift_variant	HIGH	c.195delG c.195delG	p.Ser66fs p.Ser66fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/4	279/1495	195/1221	65/406	chrX	104254464
chrX:104254845	T T	TC TC	1	a0036 a0036	1	NA19072.hp1 NA19072.hp1	frameshift_variant	HIGH	c.4dupG c.4dupG	p.Glu2fs p.Glu2fs	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	1/4	88/1495	4/1221	2/406	chrX	104254845

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:104250393	C C	T T	2	a0001c0018 a0001c0023 a0001c0018 a0001c0023	2	NA19010.hp1 NA19011.hp1 NA19010.hp1 NA19011.hp1	synonymous_variant	LOW	c.1056G>A c.1056G>A	p.Pro352Pro p.Pro352Pro	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1140/1495	1056/1221	352/406	chrX	104250393
chrX:104250519	C C	T T	1	a0001c0018 a0001c0018	1	NA19010.hp1 NA19010.hp1	synonymous_variant	LOW	c.930G>A c.930G>A	p.Ala310Ala p.Ala310Ala	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1014/1495	930/1221	310/406	chrX	104250519
chrX:104250528	C C	T T	1	a0001c0017 a0001c0017	1	NA19062.hp1 NA19062.hp1	synonymous_variant	LOW	c.921G>A c.921G>A	p.Pro307Pro p.Pro307Pro	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	1005/1495	921/1221	307/406	chrX	104250528
chrX:104250612	G G	C C	1	a0017c0036 a0017c0036	1	HG01978.hp2 HG01978.hp2	synonymous_variant	LOW	c.837C>G c.837C>G	p.Gly279Gly p.Gly279Gly	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	921/1495	837/1221	279/406	chrX	104250612

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:104250098	G G	T T	1	a0006c0006t0005 a0006c0006t0005	1	HG00639.hp1 HG00639.hp1	3_prime_UTR_variant	MODIFIER	c.130C>A c.130C>A	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	130	chrX	104250098
chrX:104250182	A A	G G	1	a0001c0001t0004 a0001c0001t0004	1	HG00741.hp1 HG00741.hp1	3_prime_UTR_variant	MODIFIER	c.46T>C c.46T>C	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	4/4	46	chrX	104250182
chrX:104254915	C C	CG CG	1	a0036c0039t0003 a0036c0039t0003	1	NA19072.hp1 NA19072.hp1	5_prime_UTR_variant	MODIFIER	c.-67dupC c.-67dupC	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	1/4	67	chrX	104254915
chrX:104254930	C C	T T	4	a0007c0007t0002 a0011c0012t0002 a0014c0014t0002 others(1): Show a0007c0007t0002 a0011c0012t0002 a0014c0014t0002 a0031c0030t0002	13	HG01243.hp1 HG02145.hp1 HG02559.hp2 others(10): Show HG01243.hp1 HG02145.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03540.hp2 NA18522.hp1	5_prime_UTR_variant	MODIFIER	c.-81G>A c.-81G>A	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	1/4	81	chrX	104254930

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:104251020	T T	C C	1	a0001c0001t0001g0069 a0001c0001t0001g0069	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.553-124A>G c.553-124A>G	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251020
chrX:104251066	C C	T T	30	a0001c0001t0001g0001 a0001c0001t0001g0013 a0001c0001t0001g0019 others(27): Show a0001c0001t0001g0001 a0001c0001t0001g0013 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0023 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0065 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0073 a0001c0001t0001g0075 a0001c0001t0004g0063 a0001c0017t0001g0057 a0001c0018t0001g0058 a0001c0023t0001g0061 a0004c0004t0001g0004 a0005c0005t0001g0014 a0006c0006t0001g0030 a0008c0008t0001g0060 a0020c0031t0001g0066 a0022c0020t0001g0059 a0026c0024t0001g0062 a0032c0028t0001g0064 a0034c0016t0001g0056 a0036c0039t0003g0029	120	HG00099.hp1 HG00280.hp1 HG00408.hp2 others(117): Show HG00099.hp1 HG00280.hp1 HG00408.hp2 HG00544.hp1 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG01069.hp1 HG01081.hp1 HG01123.hp1 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01175.hp1 HG01255.hp1 HG01257.hp1 HG01346.hp1 HG01346.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01981.hp1 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02293.hp2 HG02602.hp1 HG02683.hp2 HG02735.hp1 HG03041.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04184.hp2 NA18747.hp1 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18946.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18959.hp1 NA18961.hp1 NA18963.hp2 NA18964.hp2 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18971.hp1 NA18975.hp1 NA18975.hp2 NA18979.hp2 NA18980.hp2 NA18986.hp1 NA18987.hp2 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18992.hp2 NA18995.hp1 NA19000.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19030.hp1 NA19058.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp2 NA19082.hp1 NA19084.hp1 NA19084.hp2 NA19086.hp1 NA19087.hp1 NA19091.hp1 NA20129.hp2 NA20805.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.553-170G>A c.553-170G>A	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251066
chrX:104251128	C C	T T	4	a0002c0002t0001g0027 a0006c0006t0001g0007 a0006c0006t0005g0072 others(1): Show a0002c0002t0001g0027 a0006c0006t0001g0007 a0006c0006t0005g0072 a0025c0025t0001g0032	12	HG00323.hp1 HG00639.hp1 HG01192.hp1 others(9): Show HG00323.hp1 HG00639.hp1 HG01192.hp1 HG01361.hp2 HG01516.hp1 HG01517.hp2 HG01891.hp1 HG02897.hp1 HG02965.hp1 HG03130.hp1 HG03239.hp1 NA18906.hp1	intron_variant	MODIFIER	c.553-232G>A c.553-232G>A	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251128
chrX:104251129	A A	G G	2	a0002c0002t0001g0011 a0002c0002t0001g0055 a0002c0002t0001g0011 a0002c0002t0001g0055	6	HG02717.hp1 HG02809.hp1 HG02886.hp2 others(3): Show HG02717.hp1 HG02809.hp1 HG02886.hp2 NA18906.hp2 NA19030.hp2 NA19240.hp1	intron_variant	MODIFIER	c.553-233T>C c.553-233T>C	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251129
chrX:104251194	A A	AG AG	1	a0016c0037t0001g0076 a0016c0037t0001g0076	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.553-299dupC c.553-299dupC	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251194
chrX:104251229	T T	G G	4	a0007c0007t0002g0008 a0011c0012t0002g0015 a0014c0014t0002g0021 others(1): Show a0007c0007t0002g0008 a0011c0012t0002g0015 a0014c0014t0002g0021 a0031c0030t0002g0028	13	HG01243.hp1 HG02145.hp1 HG02559.hp2 others(10): Show HG01243.hp1 HG02145.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03540.hp2 NA18522.hp1	intron_variant	MODIFIER	c.553-333A>C c.553-333A>C	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251229
chrX:104251341	TG TG	T T	1	a0016c0037t0001g0076 a0016c0037t0001g0076	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.553-446delC c.553-446delC	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251341
chrX:104251364	C C	CA CA	1	a0016c0037t0001g0076 a0016c0037t0001g0076	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.553-469dupT c.553-469dupT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251364
chrX:104251404	T T	C C	1	a0002c0002t0001g0054 a0002c0002t0001g0054	1	HG02818.hp1 HG02818.hp1	intron_variant	MODIFIER	c.553-508A>G c.553-508A>G	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251404
chrX:104251426	T T	A A	1	a0001c0001t0001g0065 a0001c0001t0001g0065	1	HG00544.hp1 HG00544.hp1	intron_variant	MODIFIER	c.553-530A>T c.553-530A>T	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251426
chrX:104251600	AT AT	A A	1	a0036c0039t0003g0029 a0036c0039t0003g0029	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.553-705delA c.553-705delA	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251600
chrX:104251794	T T	A A	3	a0002c0002t0001g0010 a0004c0004t0001g0068 a0004c0004t0001g0071 a0002c0002t0001g0010 a0004c0004t0001g0068 a0004c0004t0001g0071	7	HG01891.hp2 HG02109.hp2 HG02258.hp1 others(4): Show HG01891.hp2 HG02109.hp2 HG02258.hp1 HG02630.hp2 HG02970.hp1 HG03453.hp1 NA19043.hp1	intron_variant	MODIFIER	c.553-898A>T c.553-898A>T	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251794
chrX:104251915	T T	C C	1	a0020c0031t0001g0066 a0020c0031t0001g0066	1	HG02165.hp2 HG02165.hp2	intron_variant	MODIFIER	c.552+868A>G c.552+868A>G	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251915
chrX:104251967	C C	T T	4	a0007c0007t0002g0008 a0011c0012t0002g0015 a0014c0014t0002g0021 others(1): Show a0007c0007t0002g0008 a0011c0012t0002g0015 a0014c0014t0002g0021 a0031c0030t0002g0028	13	HG01243.hp1 HG02145.hp1 HG02559.hp2 others(10): Show HG01243.hp1 HG02145.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03540.hp2 NA18522.hp1	intron_variant	MODIFIER	c.552+816G>A c.552+816G>A	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104251967
chrX:104252014	AT AT	A A	1	a0016c0037t0001g0076 a0016c0037t0001g0076	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.552+768delA c.552+768delA	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104252014
chrX:104252069	T T	C C	1	a0002c0002t0001g0055 a0002c0002t0001g0055	1	HG02717.hp1 HG02717.hp1	intron_variant	MODIFIER	c.552+714A>G c.552+714A>G	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104252069
chrX:104252111	TC TC	T T	1	a0016c0037t0001g0076 a0016c0037t0001g0076	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.552+671delG c.552+671delG	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104252111
chrX:104252114	CA CA	C C	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	NA18987.hp2 NA18987.hp2	intron_variant	MODIFIER	c.552+668delT c.552+668delT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104252114
chrX:104252172	A A	T T	1	a0001c0001t0001g0019 a0001c0001t0001g0019	3	NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1	intron_variant	MODIFIER	c.552+611T>A c.552+611T>A	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104252172
chrX:104252238	T T	C C	2	a0002c0002t0001g0011 a0002c0002t0001g0055 a0002c0002t0001g0011 a0002c0002t0001g0055	6	HG02717.hp1 HG02809.hp1 HG02886.hp2 others(3): Show HG02717.hp1 HG02809.hp1 HG02886.hp2 NA18906.hp2 NA19030.hp2 NA19240.hp1	intron_variant	MODIFIER	c.552+545A>G c.552+545A>G	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104252238
chrX:104252303	T T	C C	1	a0001c0001t0001g0067 a0001c0001t0001g0067	1	NA19070.hp1 NA19070.hp1	intron_variant	MODIFIER	c.552+480A>G c.552+480A>G	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104252303
chrX:104252556	A A	T T	2	a0013c0015t0001g0043 a0019c0035t0001g0042 a0013c0015t0001g0043 a0019c0035t0001g0042	2	HG02280.hp1 HG06807.hp2 HG02280.hp1 HG06807.hp2	intron_variant	MODIFIER	c.552+227T>A c.552+227T>A	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104252556
chrX:104252710	A A	AT AT	1	a0036c0039t0003g0029 a0036c0039t0003g0029	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.552+72dupA c.552+72dupA	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	3/3	chrX	104252710
chrX:104252846	CA CA	C C	1	a0036c0039t0003g0029 a0036c0039t0003g0029	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.507-19delT c.507-19delT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104252846
chrX:104253142	C C	CA CA	1	a0001c0001t0001g0041 a0001c0001t0001g0041	1	HG03927.hp2 HG03927.hp2	intron_variant	MODIFIER	c.507-315dupT c.507-315dupT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253142
chrX:104253142	CA CA	C C	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	NA18987.hp2 NA18987.hp2	intron_variant	MODIFIER	c.507-315delT c.507-315delT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253142
chrX:104253142	CAA CAA	C C	1	a0001c0001t0001g0038 a0001c0001t0001g0038	1	HG02080.hp1 HG02080.hp1	intron_variant	MODIFIER	c.507-316_507-315del others(2): Show c.507-316_507-315delTT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253142
chrX:104253151	AAC AAC	A A	4	a0001c0001t0001g0013 a0001c0001t0001g0025 a0001c0001t0001g0073 others(1): Show a0001c0001t0001g0013 a0001c0001t0001g0025 a0001c0001t0001g0073 a0006c0006t0001g0030	8	HG00408.hp2 HG00558.hp2 HG00621.hp1 others(5): Show HG00408.hp2 HG00558.hp2 HG00621.hp1 HG00733.hp1 HG02056.hp1 HG02155.hp2 NA19065.hp1 NA19091.hp1	intron_variant	MODIFIER	c.507-325_507-324del others(2): Show c.507-325_507-324delGT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253151
chrX:104253152	AC AC	A A	22	a0001c0001t0001g0001 a0001c0001t0001g0019 a0001c0001t0001g0020 others(19): Show a0001c0001t0001g0001 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0023 a0001c0001t0001g0026 a0001c0001t0001g0065 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0075 a0001c0001t0004g0063 a0001c0017t0001g0057 a0001c0018t0001g0058 a0001c0023t0001g0061 a0004c0004t0001g0004 a0005c0005t0001g0014 a0008c0008t0001g0060 a0020c0031t0001g0066 a0022c0020t0001g0059 a0026c0024t0001g0062 a0032c0028t0001g0064 a0034c0016t0001g0056 a0036c0039t0003g0029	108	HG00099.hp1 HG00280.hp1 HG00544.hp1 others(105): Show HG00099.hp1 HG00280.hp1 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG01069.hp1 HG01081.hp1 HG01123.hp1 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01175.hp1 HG01255.hp1 HG01257.hp1 HG01346.hp1 HG01346.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01981.hp1 HG02015.hp1 HG02027.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02165.hp1 HG02165.hp2 HG02293.hp2 HG02602.hp1 HG02683.hp2 HG02735.hp1 HG03041.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03834.hp2 HG03927.hp1 HG03942.hp1 HG04184.hp2 NA18747.hp1 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18946.hp1 NA18947.hp1 NA18948.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18959.hp1 NA18961.hp1 NA18963.hp2 NA18964.hp2 NA18967.hp1 NA18968.hp1 NA18969.hp2 NA18971.hp1 NA18975.hp1 NA18975.hp2 NA18979.hp2 NA18980.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18992.hp2 NA18995.hp1 NA19000.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19030.hp1 NA19058.hp1 NA19062.hp1 NA19064.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp2 NA19082.hp1 NA19084.hp1 NA19084.hp2 NA19086.hp1 NA19087.hp1 NA20129.hp2 NA20805.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.507-325delG c.507-325delG	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253152
chrX:104253153	C C	CAT CAT	6	a0002c0002t0001g0016 a0003c0003t0001g0037 a0004c0004t0001g0036 others(3): Show a0002c0002t0001g0016 a0003c0003t0001g0037 a0004c0004t0001g0036 a0004c0004t0001g0071 a0005c0005t0001g0035 a0023c0022t0001g0034	8	HG02258.hp1 HG02293.hp1 HG02723.hp1 others(5): Show HG02258.hp1 HG02293.hp1 HG02723.hp1 HG02976.hp2 HG03209.hp1 HG03834.hp1 NA19007.hp1 NA20752.hp1	intron_variant	MODIFIER	c.507-327_507-326dup others(2): Show c.507-327_507-326dupAT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253153
chrX:104253153	C C	CATAT CATAT	1	a0004c0004t0001g0033 a0004c0004t0001g0033	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.507-329_507-326dup others(4): Show c.507-329_507-326dupATAT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253153
chrX:104253153	C C	T T	4	a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 others(1): Show a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041	4	HG02080.hp1 HG03927.hp2 NA18987.hp2 others(1): Show HG02080.hp1 HG03927.hp2 NA18987.hp2 NA19068.hp1	intron_variant	MODIFIER	c.507-325G>A c.507-325G>A	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253153
chrX:104253153	CAT CAT	C C	5	a0004c0004t0001g0068 a0007c0007t0002g0008 a0011c0012t0002g0015 others(2): Show a0004c0004t0001g0068 a0007c0007t0002g0008 a0011c0012t0002g0015 a0014c0014t0002g0021 a0031c0030t0002g0028	14	HG01243.hp1 HG01891.hp2 HG02145.hp1 others(11): Show HG01243.hp1 HG01891.hp2 HG02145.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03540.hp2 NA18522.hp1	intron_variant	MODIFIER	c.507-327_507-326del others(2): Show c.507-327_507-326delAT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253153
chrX:104253155	T T	A A	3	a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0069 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0069	5	HG00408.hp2 HG00733.hp1 HG03654.hp1 others(2): Show HG00408.hp2 HG00733.hp1 HG03654.hp1 NA18968.hp1 NA19030.hp1	intron_variant	MODIFIER	c.507-327A>T c.507-327A>T	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253155
chrX:104253381	T T	C C	1	a0002c0002t0001g0070 a0002c0002t0001g0070	1	NA19240.hp2 NA19240.hp2	intron_variant	MODIFIER	c.507-553A>G c.507-553A>G	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253381
chrX:104253401	G G	GA GA	2	a0004c0004t0001g0071 a0036c0039t0003g0029 a0004c0004t0001g0071 a0036c0039t0003g0029	2	HG02258.hp1 NA19072.hp1 HG02258.hp1 NA19072.hp1	intron_variant	MODIFIER	c.507-574dupT c.507-574dupT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253401
chrX:104253412	C C	CA CA	8	a0002c0002t0001g0027 a0006c0006t0001g0007 a0006c0006t0005g0072 others(5): Show a0002c0002t0001g0027 a0006c0006t0001g0007 a0006c0006t0005g0072 a0007c0007t0002g0008 a0011c0012t0002g0015 a0014c0014t0002g0021 a0025c0025t0001g0032 a0031c0030t0002g0028	25	HG00323.hp1 HG00639.hp1 HG01192.hp1 others(22): Show HG00323.hp1 HG00639.hp1 HG01192.hp1 HG01243.hp1 HG01361.hp2 HG01516.hp1 HG01517.hp2 HG01891.hp1 HG02145.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02897.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG03130.hp1 HG03239.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03540.hp2 NA18522.hp1 NA18906.hp1	intron_variant	MODIFIER	c.507-585dupT c.507-585dupT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253412
chrX:104253445	G G	A A	2	a0001c0001t0001g0020 a0001c0001t0001g0073 a0001c0001t0001g0020 a0001c0001t0001g0073	4	HG00558.hp2 NA18967.hp1 NA19058.hp1 others(1): Show HG00558.hp2 NA18967.hp1 NA19058.hp1 NA19080.hp2	intron_variant	MODIFIER	c.507-617C>T c.507-617C>T	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253445
chrX:104253449	T T	A A	1	a0002c0002t0001g0074 a0002c0002t0001g0074	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.507-621A>T c.507-621A>T	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253449
chrX:104253501	AG AG	A A	1	a0016c0037t0001g0076 a0016c0037t0001g0076	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.506+652delC c.506+652delC	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253501
chrX:104253599	T T	TC TC	1	a0036c0039t0003g0029 a0036c0039t0003g0029	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.506+554dupG c.506+554dupG	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253599
chrX:104253641	C C	T T	1	a0001c0001t0001g0023 a0001c0001t0001g0023	2	HG01167.hp1 HG01169.hp1 HG01167.hp1 HG01169.hp1	intron_variant	MODIFIER	c.506+513G>A c.506+513G>A	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253641
chrX:104253659	GA GA	G G	1	a0025c0025t0001g0032 a0025c0025t0001g0032	1	HG01891.hp1 HG01891.hp1	intron_variant	MODIFIER	c.506+494delT c.506+494delT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253659
chrX:104253797	C C	CG CG	1	a0036c0039t0003g0029 a0036c0039t0003g0029	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.506+356dupC c.506+356dupC	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253797
chrX:104253820	A A	AG AG	1	a0016c0037t0001g0076 a0016c0037t0001g0076	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.506+333dupC c.506+333dupC	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253820
chrX:104253974	C C	G G	4	a0007c0007t0002g0008 a0011c0012t0002g0015 a0014c0014t0002g0021 others(1): Show a0007c0007t0002g0008 a0011c0012t0002g0015 a0014c0014t0002g0021 a0031c0030t0002g0028	13	HG01243.hp1 HG02145.hp1 HG02559.hp2 others(10): Show HG01243.hp1 HG02145.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03540.hp2 NA18522.hp1	intron_variant	MODIFIER	c.506+180G>C c.506+180G>C	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104253974
chrX:104254024	T T	C C	1	a0001c0001t0001g0075 a0001c0001t0001g0075	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.506+130A>G c.506+130A>G	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104254024
chrX:104254067	G G	C C	4	a0007c0007t0002g0008 a0011c0012t0002g0015 a0014c0014t0002g0021 others(1): Show a0007c0007t0002g0008 a0011c0012t0002g0015 a0014c0014t0002g0021 a0031c0030t0002g0028	13	HG01243.hp1 HG02145.hp1 HG02559.hp2 others(10): Show HG01243.hp1 HG02145.hp1 HG02559.hp2 HG02622.hp1 HG02622.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03540.hp2 NA18522.hp1	intron_variant	MODIFIER	c.506+87C>G c.506+87C>G	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104254067
chrX:104254114	TC TC	T T	1	a0036c0039t0003g0029 a0036c0039t0003g0029	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.506+39delG c.506+39delG	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	2/3	chrX	104254114
chrX:104254582	GA GA	G G	1	a0035c0038t0001g0077 a0035c0038t0001g0077	1	NA19067.hp1 NA19067.hp1	splice_region_variant&intron_variant	LOW	c.83-6delT c.83-6delT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	1/3	chrX	104254582
chrX:104254656	C C	G G	2	a0002c0002t0001g0031 a0004c0004t0001g0022 a0002c0002t0001g0031 a0004c0004t0001g0022	3	HG02486.hp1 HG02895.hp1 HG02897.hp2 HG02486.hp1 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.83-79G>C c.83-79G>C	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	1/3	chrX	104254656
chrX:104254659	TG TG	T T	1	a0035c0038t0001g0077 a0035c0038t0001g0077	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.83-83delC c.83-83delC	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	1/3	chrX	104254659
chrX:104254706	TC TC	T T	1	a0035c0038t0001g0077 a0035c0038t0001g0077	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.82+61delG c.82+61delG	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	1/3	chrX	104254706
chrX:104254713	GA GA	G G	1	a0035c0038t0001g0077 a0035c0038t0001g0077	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.82+54delT c.82+54delT	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	1/3	chrX	104254713
chrX:104254721	C C	T T	1	a0006c0006t0001g0030 a0006c0006t0001g0030	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.82+47G>A c.82+47G>A	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	1/3	chrX	104254721
chrX:104254732	GT GT	G G	1	a0035c0038t0001g0077 a0035c0038t0001g0077	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.82+35delA c.82+35delA	ESX1	ENSG00000123576.5	transcript	ENST00000372588.4	protein_coding	1/3	chrX	104254732

Search by Genic region

Search

🧬 JoGo Online Haplotype Explorer ESX1_chrX_104245038_104259933

JoGo Local Haplotype Explorer (on iGV) ESX1_chrX_104245038_104259933

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 36)

CCoding Level Haplotype Info (Total: 39)

TTranscript Level Haplotype Info (Total: 5)

GGenebody Level Haplotype Info (Total: 77)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 39)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 41)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 77)

Haplotype Details by Sample (Haploid Level) (Total: 313)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 37)

CCoding Level Variants (Synonymous Mutations) (Total: 4)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 4)

GGenebody Level Haplotype Variants (Intron) (Total: 56)

External Link

Annotation (Repeats)

Annotation (SNP Array)