Joint Open Genome and Omics Platform (JoGo)

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geneid	728062
ensemblid	ENSG00000226023.6
hgncid	33287
symbol	CT47A6
name	cancer/testis antigen family 47 member A6
refseq_nuc	NM_001080141.2
refseq_prot	NP_001073610.1
ensembl_nuc	ENST00000419194.3
ensembl_prot	ENSP00000399711.2
mane_status	MANE Select
chr	chrX
start	120958165
end	120961487
strand	-
ver	v1.2
region	chrX:120958165-120961487
region5000	chrX:120953165-120966487
regionname0	CT47A6_chrX_120958165_120961487
regionname5000	CT47A6_chrX_120953165_120966487

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	288	96	23	32	19	8	14	13	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0002	0/0	288	6	5	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0003	0/0	31	1	0	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0004	0/0	66	1	0	0	1	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0005	0/0	288	1	0	0	1	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0006	0/0	288	1	0	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0007	0/0	288	1	0	0	0	0	1	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0008	0/0	288	1	0	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0009	0/0	288	1	1	0	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0010	0/0	287	1	1	0	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	867	77	20	25	15	5	12	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0002	0/0	867	10	0	4	2	2	2	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0003	0/0	867	6	5	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0004	0/0	867	3	0	1	2	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0005	0/0	867	2	0	2	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0006	0/0	867	2	2	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0007	0/0	870	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0008	0/0	864	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0009	0/0	867	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0010	0/0	867	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0011	0/0	867	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0012	0/0	867	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0013	0/0	867	1	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0014	0/0	867	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0015	0/0	868	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
c0016	0/0	867	1	0	0	0	1	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	432	78	18	27	16	5	12	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
t0002	0/0	432	22	10	5	5	1	1	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
t0003	0/0	432	5	1	1	0	1	2	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
t0004	0/0	431	1	0	0	0	1	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
t0005	0/0	431	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
t0006	0/0	433	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
t0007	0/0	430	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
t0008	0/0	432	1	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	18	9	7	0	1	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0002	0/0	16	0	7	6	1	2	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0003	0/0	16	4	5	5	1	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0004	0/0	12	4	3	3	0	2	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0005	0/0	10	0	4	2	2	2	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0006	0/0	5	1	1	0	1	2	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0007	0/0	3	2	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0008	0/0	3	3	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0009	0/0	2	0	2	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0010	0/0	2	0	1	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0011	0/0	2	0	1	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0012	0/0	2	2	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0013	0/0	1	0	0	0	1	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0014	0/0	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0015	0/0	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0016	0/0	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0017	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0018	0/0	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0019	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0020	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0021	0/0	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0022	0/0	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0023	0/0	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0024	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0025	0/0	1	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0026	0/0	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0027	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0028	0/0	1	0	0	0	1	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0029	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0030	0/0	1	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
g0031	0/0	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	867	77	20	25	15	5	12	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0002	0/0	867	10	0	4	2	2	2	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0004	0/0	867	3	0	1	2	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0005	0/0	867	2	0	2	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0006	0/0	867	2	2	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0010	0/0	867	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0016	0/0	867	1	0	0	0	1	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0002c0003	0/0	867	6	5	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0003c0007	0/0	870	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0004c0015	0/0	868	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0005c0012	0/0	867	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0006c0009	0/0	867	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0007c0011	0/0	867	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0008c0013	0/0	867	1	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0009c0014	0/0	867	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0010c0008	0/0	864	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1298	54	15	18	10	2	9	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0001t0002	0/0	1298	16	4	5	5	1	1	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0001t0003	0/0	1298	5	1	1	0	1	2	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0001t0004	0/0	1297	1	0	0	0	1	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0001t0008	0/0	1298	1	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0002t0001	0/0	1298	10	0	4	2	2	2	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0004t0001	0/0	1298	2	0	1	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0004t0006	0/0	1299	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0005t0001	0/0	1298	2	0	2	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0006t0002	0/0	1298	2	2	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0010t0002	0/0	1298	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0001c0016t0001	0/0	1298	1	0	0	0	1	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0002c0003t0001	0/0	1298	3	2	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0002c0003t0002	0/0	1298	3	3	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0003c0007t0007	0/0	1299	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0004c0015t0001	0/0	1299	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0005c0012t0001	0/0	1298	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0006c0009t0001	0/0	1298	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0007c0011t0001	0/0	1298	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0008c0013t0001	0/0	1298	1	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0009c0014t0001	0/0	1298	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487
a0010c0008t0005	0/0	1294	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	copy fasta	chrX	120953165	120966487

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	18	9	7	0	1	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0001g0002	0/0	16	0	7	6	1	2	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0001g0004	0/0	12	4	3	3	0	2	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0001g0011	0/0	2	0	1	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0001g0015	0/0	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0001g0016	0/0	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0001g0017	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0001g0018	0/0	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0001g0021	0/0	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0001g0022	0/0	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0002g0003	0/0	16	4	5	5	1	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0003g0006	0/0	5	1	1	0	1	2	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0004g0013	0/0	1	0	0	0	1	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0001t0008g0030	0/0	1	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0002t0001g0005	0/0	10	0	4	2	2	2	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0004t0001g0010	0/0	2	0	1	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0004t0006g0020	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0005t0001g0009	0/0	2	0	2	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0006t0002g0012	0/0	2	2	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0010t0002g0031	0/0	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0001c0016t0001g0028	0/0	1	0	0	0	1	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0002c0003t0001g0007	0/0	3	2	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0002c0003t0002g0008	0/0	3	3	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0003c0007t0007g0029	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0004c0015t0001g0027	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0005c0012t0001g0024	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0006c0009t0001g0019	0/0	1	0	0	1	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0007c0011t0001g0023	0/0	1	0	0	0	0	1	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0008c0013t0001g0025	0/0	1	0	1	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0009c0014t0001g0026	0/0	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
a0010c0008t0005g0014	0/0	1	1	0	0	0	0	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0016	t0001	g0028	EUR	GBR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00323	hp1	a0001	c0001	t0004	g0013	EUR	FIN	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00323	hp2	a0001	c0002	t0001	g0005	EUR	FIN	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00609	hp1	a0001	c0001	t0001	g0002	EAS	CHS	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00621	hp1	a0003	c0007	t0007	g0029	EAS	CHS	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00642	hp1	a0001	c0002	t0001	g0005	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00733	hp1	a0001	c0005	t0001	g0009	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00733	hp2	a0001	c0005	t0001	g0009	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00735	hp1	a0008	c0013	t0001	g0025	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00735	hp2	a0001	c0001	t0001	g0002	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00738	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG00741	hp2	a0001	c0004	t0001	g0010	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01069	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01071	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01071	hp2	a0001	c0001	t0002	g0003	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01074	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01099	hp1	a0001	c0001	t0001	g0004	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01109	hp1	a0001	c0001	t0002	g0003	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01168	hp1	a0001	c0001	t0002	g0003	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01168	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01169	hp2	a0002	c0003	t0001	g0007	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01175	hp1	a0001	c0001	t0008	g0030	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01192	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01255	hp1	a0001	c0002	t0001	g0005	AMR	CLM	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01358	hp1	a0001	c0001	t0003	g0006	AMR	CLM	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01361	hp2	a0001	c0001	t0002	g0003	AMR	CLM	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01515	hp1	a0001	c0001	t0002	g0003	EUR	IBS	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01517	hp1	a0001	c0001	t0003	g0006	EUR	IBS	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01517	hp2	a0001	c0002	t0001	g0005	EUR	IBS	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01891	hp1	a0001	c0001	t0003	g0006	AFR	ACB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01891	hp2	a0001	c0001	t0001	g0004	AFR	ACB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01928	hp1	a0001	c0001	t0001	g0002	AMR	PEL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01934	hp1	a0001	c0001	t0002	g0003	AMR	PEL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01975	hp1	a0001	c0002	t0001	g0005	AMR	PEL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01975	hp2	a0001	c0001	t0001	g0004	AMR	PEL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02004	hp1	a0001	c0002	t0001	g0005	AMR	PEL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02004	hp2	a0001	c0001	t0001	g0004	AMR	PEL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02015	hp1	a0001	c0004	t0001	g0010	EAS	KHV	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02027	hp1	a0006	c0009	t0001	g0019	EAS	KHV	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02056	hp1	a0001	c0001	t0001	g0004	EAS	KHV	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02074	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02135	hp1	a0001	c0001	t0001	g0004	EAS	KHV	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02258	hp1	a0001	c0001	t0001	g0021	AFR	ACB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02615	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02647	hp1	a0001	c0010	t0002	g0031	AFR	GWD	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02683	hp1	a0001	c0001	t0001	g0002	SAS	PJL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02683	hp2	a0001	c0001	t0001	g0018	SAS	PJL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02717	hp1	a0001	c0001	t0002	g0003	AFR	GWD	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02723	hp1	a0001	c0001	t0002	g0003	AFR	GWD	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02723	hp2	a0002	c0003	t0001	g0007	AFR	GWD	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02735	hp1	a0001	c0001	t0001	g0004	SAS	PJL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02738	hp1	a0001	c0001	t0001	g0004	SAS	PJL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02818	hp1	a0001	c0001	t0001	g0004	AFR	GWD	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02818	hp2	a0001	c0001	t0001	g0004	AFR	GWD	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02970	hp1	a0002	c0003	t0002	g0008	AFR	ESN	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02970	hp2	a0002	c0003	t0001	g0007	AFR	ESN	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02976	hp1	a0001	c0006	t0002	g0012	AFR	ESN	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03139	hp1	a0010	c0008	t0005	g0014	AFR	ESN	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03195	hp1	a0001	c0001	t0001	g0004	AFR	ESN	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03195	hp2	a0002	c0003	t0002	g0008	AFR	ESN	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03486	hp1	a0002	c0003	t0002	g0008	AFR	MSL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03486	hp2	a0001	c0001	t0001	g0001	AFR	MSL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03490	hp1	a0001	c0001	t0002	g0003	SAS	PJL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03491	hp1	a0001	c0001	t0003	g0006	SAS	PJL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03491	hp2	a0001	c0001	t0001	g0011	SAS	PJL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03492	hp1	a0001	c0001	t0003	g0006	SAS	PJL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03688	hp1	a0007	c0011	t0001	g0023	SAS	STU	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03831	hp1	a0001	c0001	t0001	g0002	SAS	BEB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03831	hp2	a0001	c0002	t0001	g0005	SAS	BEB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03942	hp1	a0001	c0001	t0001	g0015	SAS	BEB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG04204	hp1	a0001	c0001	t0001	g0016	SAS	STU	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG04228	hp1	a0001	c0002	t0001	g0005	SAS	STU	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA18612	hp1	a0001	c0001	t0002	g0003	EAS	CHB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA18940	hp1	a0001	c0001	t0002	g0003	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA18944	hp1	a0001	c0001	t0001	g0017	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA18948	hp1	a0005	c0012	t0001	g0024	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA18962	hp1	a0001	c0001	t0002	g0003	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA18983	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19004	hp1	a0001	c0002	t0001	g0005	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19009	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19043	hp1	a0001	c0001	t0001	g0022	AFR	LWK	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19055	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19060	hp1	a0004	c0015	t0001	g0027	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19070	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19084	hp1	a0001	c0001	t0002	g0003	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19084	hp2	a0001	c0004	t0006	g0020	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19085	hp1	a0001	c0001	t0002	g0003	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19088	hp1	a0001	c0002	t0001	g0005	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA19091	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA20805	hp1	a0001	c0001	t0001	g0002	EUR	TSI	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01123	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG01123	hp2	a0001	c0001	t0001	g0011	AMR	CLM	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02109	hp1	a0001	c0001	t0001	g0001	AFR	ACB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02109	hp2	a0001	c0001	t0001	g0001	AFR	ACB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02559	hp1	a0009	c0014	t0001	g0026	AFR	ACB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG02559	hp2	a0001	c0006	t0002	g0012	AFR	ACB	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA21309	hp1	a0001	c0001	t0002	g0003	AFR	LWK	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487
NA21309	hp2	a0001	c0001	t0002	g0003	AFR	LWK	CT47A6_chrX_120953165_120966487	CT47A6	chrX	120953165	120966487

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:120959537	C C	T T	1	a0006 a0006	1	HG02027.hp1 HG02027.hp1	missense_variant	MODERATE	c.805G>A c.805G>A	p.Glu269Lys p.Glu269Lys	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/3	1064/1298	805/867	269/288	chrX	120959537
chrX:120960499	TG TG	T T	1	a0003 a0003	1	HG00621.hp1 HG00621.hp1	frameshift_variant	HIGH	c.729delC c.729delC	p.Thr244fs p.Thr244fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	988/1298	729/867	243/288	chrX	120960499
chrX:120960578	C C	CA CA	1	a0003 a0003	1	HG00621.hp1 HG00621.hp1	frameshift_variant	HIGH	c.650_651insT c.650_651insT	p.Glu217fs p.Glu217fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	909/1298	650/867	217/288	chrX	120960578
chrX:120960598	G G	C C	1	a0002 a0002	6	HG01169.hp2 HG02723.hp2 HG02970.hp1 others(3): Show HG01169.hp2 HG02723.hp2 HG02970.hp1 HG02970.hp2 HG03195.hp2 HG03486.hp1	missense_variant	MODERATE	c.631C>G c.631C>G	p.Pro211Ala p.Pro211Ala	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	890/1298	631/867	211/288	chrX	120960598
chrX:120960687	C C	CG CG	1	a0010 a0010	1	HG03139.hp1 HG03139.hp1	frameshift_variant	HIGH	c.541dupC c.541dupC	p.Arg181fs p.Arg181fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	800/1298	541/867	181/288	chrX	120960687
chrX:120960690	G G	A A	1	a0007 a0007	1	HG03688.hp1 HG03688.hp1	missense_variant	MODERATE	c.539C>T c.539C>T	p.Ala180Val p.Ala180Val	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	798/1298	539/867	180/288	chrX	120960690
chrX:120960717	G G	GCA GCA	1	a0010 a0010	1	HG03139.hp1 HG03139.hp1	frameshift_variant	HIGH	c.511_512insTG c.511_512insTG	p.Pro171fs p.Pro171fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	770/1298	511/867	171/288	chrX	120960717
chrX:120960725	CA CA	C C	1	a0010 a0010	1	HG03139.hp1 HG03139.hp1	frameshift_variant	HIGH	c.503delT c.503delT	p.Leu168fs p.Leu168fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	762/1298	503/867	168/288	chrX	120960725
chrX:120960728	C C	CA CA	1	a0003 a0003	1	HG00621.hp1 HG00621.hp1	frameshift_variant	HIGH	c.500_501insT c.500_501insT	p.Leu168fs p.Leu168fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	759/1298	500/867	167/288	chrX	120960728
chrX:120960729	G G	A A	1	a0005 a0005	1	NA18948.hp1 NA18948.hp1	missense_variant	MODERATE	c.500C>T c.500C>T	p.Pro167Leu p.Pro167Leu	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	759/1298	500/867	167/288	chrX	120960729
chrX:120960740	GC GC	G G	1	a0003 a0003	1	HG00621.hp1 HG00621.hp1	frameshift_variant	HIGH	c.488delG c.488delG	p.Gly163fs p.Gly163fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	747/1298	488/867	163/288	chrX	120960740
chrX:120960756	G G	A A	1	a0008 a0008	1	HG00735.hp1 HG00735.hp1	missense_variant	MODERATE	c.473C>T c.473C>T	p.Ala158Val p.Ala158Val	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	732/1298	473/867	158/288	chrX	120960756
chrX:120960757	C C	CT CT	1	a0010 a0010	1	HG03139.hp1 HG03139.hp1	frameshift_variant	HIGH	c.471_472insA c.471_472insA	p.Ala158fs p.Ala158fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	730/1298	471/867	157/288	chrX	120960757
chrX:120960873	A A	AT AT	1	a0010 a0010	1	HG03139.hp1 HG03139.hp1	frameshift_variant	HIGH	c.355dupA c.355dupA	p.Ile119fs p.Ile119fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	614/1298	355/867	119/288	chrX	120960873
chrX:120960931	T T	TC TC	1	a0003 a0003	1	HG00621.hp1 HG00621.hp1	frameshift_variant	HIGH	c.297dupG c.297dupG	p.Asn100fs p.Asn100fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	556/1298	297/867	99/288	chrX	120960931
chrX:120960936	T T	C C	1	a0009 a0009	1	HG02559.hp1 HG02559.hp1	missense_variant	MODERATE	c.293A>G c.293A>G	p.Glu98Gly p.Glu98Gly	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	552/1298	293/867	98/288	chrX	120960936
chrX:120961020	G G	GC GC	1	a0003 a0003	1	HG00621.hp1 HG00621.hp1	frameshift_variant	HIGH	c.208dupG c.208dupG	p.Ala70fs p.Ala70fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	467/1298	208/867	70/288	chrX	120961020
chrX:120961031	A A	AC AC	1	a0010 a0010	1	HG03139.hp1 HG03139.hp1	frameshift_variant	HIGH	c.197dupG c.197dupG	p.Glu67fs p.Glu67fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	456/1298	197/867	66/288	chrX	120961031
chrX:120961060	G G	GC GC	1	a0004 a0004	1	NA19060.hp1 NA19060.hp1	frameshift_variant	HIGH	c.168dupG c.168dupG	p.Pro57fs p.Pro57fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	427/1298	168/867	56/288	chrX	120961060
chrX:120961081	C C	CG CG	1	a0010 a0010	1	HG03139.hp1 HG03139.hp1	frameshift_variant	HIGH	c.147dupC c.147dupC	p.Glu50fs p.Glu50fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	406/1298	147/867	49/288	chrX	120961081
chrX:120961102	TGCTGTCG others(2): Show TGCTGTCGGG	T T	1	a0010 a0010	1	HG03139.hp1 HG03139.hp1	conservative_inframe_deletion	MODERATE	c.118_126delCCCGACAG others(1): Show c.118_126delCCCGACAGC	p.Pro40_Ser42del p.Pro40_Ser42del	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	385/1298	118/867	40/288	chrX	120961102
chrX:120961176	A A	AC AC	1	a0003 a0003	1	HG00621.hp1 HG00621.hp1	frameshift_variant	HIGH	c.52dupG c.52dupG	p.Val18fs p.Val18fs	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	311/1298	52/867	18/288	chrX	120961176

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:120959508	T T	C C	14	a0001c0001 a0001c0005 a0001c0006 others(11): Show a0001c0001 a0001c0005 a0001c0006 a0001c0010 a0001c0016 a0002c0003 a0003c0007 a0004c0015 a0005c0012 a0006c0009 a0007c0011 a0008c0013 a0009c0014 a0010c0008	97	HG00140.hp1 HG00323.hp1 HG00609.hp1 others(94): Show HG00140.hp1 HG00323.hp1 HG00609.hp1 HG00621.hp1 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01515.hp1 HG01517.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01975.hp2 HG02004.hp2 HG02027.hp1 HG02056.hp1 HG02074.hp1 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02258.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03688.hp1 HG03831.hp1 HG03942.hp1 HG04204.hp1 NA18612.hp1 NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18962.hp1 NA18983.hp1 NA19009.hp1 NA19043.hp1 NA19055.hp1 NA19060.hp1 NA19070.hp1 NA19084.hp1 NA19085.hp1 NA19091.hp1 NA20752.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	synonymous_variant	LOW	c.834A>G c.834A>G	p.Ala278Ala p.Ala278Ala	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/3	1093/1298	834/867	278/288	chrX	120959508
chrX:120960530	T T	C C	14	a0001c0001 a0001c0004 a0001c0006 others(11): Show a0001c0001 a0001c0004 a0001c0006 a0001c0010 a0001c0016 a0002c0003 a0003c0007 a0004c0015 a0005c0012 a0006c0009 a0007c0011 a0008c0013 a0009c0014 a0010c0008	98	HG00140.hp1 HG00323.hp1 HG00609.hp1 others(95): Show HG00140.hp1 HG00323.hp1 HG00609.hp1 HG00621.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01515.hp1 HG01517.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01975.hp2 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02056.hp1 HG02074.hp1 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02258.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03688.hp1 HG03831.hp1 HG03942.hp1 HG04204.hp1 NA18612.hp1 NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18962.hp1 NA18983.hp1 NA19009.hp1 NA19043.hp1 NA19055.hp1 NA19060.hp1 NA19070.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19091.hp1 NA20752.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	synonymous_variant	LOW	c.699A>G c.699A>G	p.Pro233Pro p.Pro233Pro	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	958/1298	699/867	233/288	chrX	120960530
chrX:120960584	G G	A A	1	a0001c0010 a0001c0010	1	HG02647.hp1 HG02647.hp1	synonymous_variant	LOW	c.645C>T c.645C>T	p.Ala215Ala p.Ala215Ala	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	904/1298	645/867	215/288	chrX	120960584
chrX:120960614	G G	C C	1	a0001c0006 a0001c0006	2	HG02559.hp2 HG02976.hp1 HG02559.hp2 HG02976.hp1	synonymous_variant	LOW	c.615C>G c.615C>G	p.Ala205Ala p.Ala205Ala	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	874/1298	615/867	205/288	chrX	120960614
chrX:120961211	G G	A A	1	a0001c0016 a0001c0016	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.18C>T c.18C>T	p.Asp6Asp p.Asp6Asp	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	277/1298	18/867	6/288	chrX	120961211

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:120958170	GT GT	G G	1	a0003c0007t0007 a0003c0007t0007	1	HG00621.hp1 HG00621.hp1	3_prime_UTR_variant	MODIFIER	c.166delA c.166delA	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	3/3	1304	chrX	120958170
chrX:120958219	A A	AT AT	1	a0001c0004t0006 a0001c0004t0006	1	NA19084.hp2 NA19084.hp2	3_prime_UTR_variant	MODIFIER	c.117dupA c.117dupA	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	3/3	1255	chrX	120958219
chrX:120958245	TG TG	T T	1	a0010c0008t0005 a0010c0008t0005	1	HG03139.hp1 HG03139.hp1	3_prime_UTR_variant	MODIFIER	c.91delC c.91delC	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	3/3	1229	chrX	120958245
chrX:120958294	TC TC	T T	1	a0003c0007t0007 a0003c0007t0007	1	HG00621.hp1 HG00621.hp1	3_prime_UTR_variant	MODIFIER	c.42delG c.42delG	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	3/3	1180	chrX	120958294
chrX:120961249	TG TG	T T	1	a0001c0001t0004 a0001c0001t0004	1	HG00323.hp1 HG00323.hp1	5_prime_UTR_variant	MODIFIER	c.-22delC c.-22delC	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	22	chrX	120961249
chrX:120961261	C C	A A	1	a0003c0007t0007 a0003c0007t0007	1	HG00621.hp1 HG00621.hp1	5_prime_UTR_variant	MODIFIER	c.-33G>T c.-33G>T	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	33	chrX	120961261
chrX:120961343	A A	G G	1	a0001c0001t0003 a0001c0001t0003	5	HG01358.hp1 HG01517.hp1 HG01891.hp1 others(2): Show HG01358.hp1 HG01517.hp1 HG01891.hp1 HG03491.hp1 HG03492.hp1	5_prime_UTR_variant	MODIFIER	c.-115T>C c.-115T>C	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	115	chrX	120961343
chrX:120961353	C C	T T	1	a0001c0001t0008 a0001c0001t0008	1	HG01175.hp1 HG01175.hp1	5_prime_UTR_variant	MODIFIER	c.-125G>A c.-125G>A	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	125	chrX	120961353
chrX:120961368	G G	A A	1	a0001c0001t0008 a0001c0001t0008	1	HG01175.hp1 HG01175.hp1	5_prime_UTR_variant	MODIFIER	c.-140C>T c.-140C>T	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	140	chrX	120961368
chrX:120961400	A A	G G	1	a0001c0001t0008 a0001c0001t0008	1	HG01175.hp1 HG01175.hp1	5_prime_UTR_variant	MODIFIER	c.-172T>C c.-172T>C	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	172	chrX	120961400
chrX:120961427	A A	G G	1	a0001c0001t0008 a0001c0001t0008	1	HG01175.hp1 HG01175.hp1	5_prime_UTR_variant	MODIFIER	c.-199T>C c.-199T>C	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	199	chrX	120961427
chrX:120961442	G G	T T	1	a0001c0001t0008 a0001c0001t0008	1	HG01175.hp1 HG01175.hp1	5_prime_UTR_variant	MODIFIER	c.-214C>A c.-214C>A	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	214	chrX	120961442
chrX:120961463	C C	T T	1	a0001c0001t0008 a0001c0001t0008	1	HG01175.hp1 HG01175.hp1	5_prime_UTR_variant	MODIFIER	c.-235G>A c.-235G>A	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	235	chrX	120961463
chrX:120961467	T T	G G	1	a0001c0001t0008 a0001c0001t0008	1	HG01175.hp1 HG01175.hp1	5_prime_UTR_variant	MODIFIER	c.-239A>C c.-239A>C	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	239	chrX	120961467
chrX:120961468	T T	C C	1	a0001c0001t0008 a0001c0001t0008	1	HG01175.hp1 HG01175.hp1	5_prime_UTR_variant	MODIFIER	c.-240A>G c.-240A>G	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	240	chrX	120961468
chrX:120961484	T T	C C	5	a0001c0001t0002 a0001c0001t0003 a0001c0006t0002 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0006t0002 a0001c0010t0002 a0002c0003t0002	27	HG01071.hp2 HG01109.hp1 HG01168.hp1 others(24): Show HG01071.hp2 HG01109.hp1 HG01168.hp1 HG01358.hp1 HG01361.hp2 HG01515.hp1 HG01517.hp1 HG01891.hp1 HG01934.hp1 HG02559.hp2 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02970.hp1 HG02976.hp1 HG03195.hp2 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03492.hp1 NA18612.hp1 NA18940.hp1 NA18962.hp1 NA19084.hp1 NA19085.hp1 NA21309.hp1 NA21309.hp2	5_prime_UTR_variant	MODIFIER	c.-256A>G c.-256A>G	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/3	256	chrX	120961484

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:120958359	G G	A A	20	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0011 others(17): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0011 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0002g0003 a0001c0001t0003g0006 a0001c0001t0008g0030 a0001c0004t0006g0020 a0001c0006t0002g0012 a0001c0010t0002g0031 a0001c0016t0001g0028 a0002c0003t0001g0007 a0002c0003t0002g0008 a0003c0007t0007g0029 a0004c0015t0001g0027 a0005c0012t0001g0024 a0006c0009t0001g0019 a0007c0011t0001g0023 a0010c0008t0005g0014	73	HG00140.hp1 HG00621.hp1 HG00741.hp1 others(70): Show HG00140.hp1 HG00621.hp1 HG00741.hp1 HG01071.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01515.hp1 HG01517.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01975.hp2 HG02004.hp2 HG02027.hp1 HG02056.hp1 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02258.hp1 HG02486.hp1 HG02559.hp2 HG02615.hp1 HG02615.hp2 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03688.hp1 NA18612.hp1 NA18940.hp1 NA18948.hp1 NA18962.hp1 NA19043.hp1 NA19060.hp1 NA19070.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA20752.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.32-54C>T c.32-54C>T	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120958359
chrX:120958423	TA TA	T T	1	a0003c0007t0007g0029 a0003c0007t0007g0029	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.32-119delT c.32-119delT	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120958423
chrX:120958670	GC GC	G G	1	a0003c0007t0007g0029 a0003c0007t0007g0029	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.32-366delG c.32-366delG	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120958670
chrX:120958786	T T	TA TA	1	a0001c0001t0004g0013 a0001c0001t0004g0013	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.32-482dupT c.32-482dupT	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120958786
chrX:120958801	GA GA	G G	2	a0001c0001t0004g0013 a0003c0007t0007g0029 a0001c0001t0004g0013 a0003c0007t0007g0029	2	HG00323.hp1 HG00621.hp1 HG00323.hp1 HG00621.hp1	intron_variant	MODIFIER	c.32-497delT c.32-497delT	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120958801
chrX:120958906	T T	TA TA	1	a0010c0008t0005g0014 a0010c0008t0005g0014	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.31+537dupT c.31+537dupT	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120958906
chrX:120958949	T T	C C	9	a0001c0001t0001g0004 a0001c0001t0001g0011 a0001c0004t0006g0020 others(6): Show a0001c0001t0001g0004 a0001c0001t0001g0011 a0001c0004t0006g0020 a0001c0016t0001g0028 a0003c0007t0007g0029 a0004c0015t0001g0027 a0005c0012t0001g0024 a0006c0009t0001g0019 a0010c0008t0005g0014	21	HG00140.hp1 HG00621.hp1 HG01099.hp1 others(18): Show HG00140.hp1 HG00621.hp1 HG01099.hp1 HG01123.hp2 HG01891.hp2 HG01975.hp2 HG02004.hp2 HG02027.hp1 HG02056.hp1 HG02135.hp1 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG03139.hp1 HG03195.hp1 HG03491.hp2 NA18948.hp1 NA19060.hp1 NA19070.hp1 NA19084.hp2	intron_variant	MODIFIER	c.31+495A>G c.31+495A>G	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120958949
chrX:120959010	TA TA	T T	1	a0001c0001t0004g0013 a0001c0001t0004g0013	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.31+433delT c.31+433delT	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120959010
chrX:120959133	A A	AC AC	1	a0003c0007t0007g0029 a0003c0007t0007g0029	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.31+310dupG c.31+310dupG	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120959133
chrX:120959228	A A	AG AG	1	a0001c0001t0004g0013 a0001c0001t0004g0013	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.31+215dupC c.31+215dupC	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120959228
chrX:120959232	A A	G G	2	a0001c0001t0001g0011 a0006c0009t0001g0019 a0001c0001t0001g0011 a0006c0009t0001g0019	3	HG01123.hp2 HG02027.hp1 HG03491.hp2 HG01123.hp2 HG02027.hp1 HG03491.hp2	intron_variant	MODIFIER	c.31+212T>C c.31+212T>C	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120959232
chrX:120959309	A A	T T	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG04204.hp1 HG04204.hp1	intron_variant	MODIFIER	c.31+135T>A c.31+135T>A	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120959309
chrX:120959335	C C	CT CT	1	a0001c0001t0004g0013 a0001c0001t0004g0013	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.31+108dupA c.31+108dupA	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120959335
chrX:120959397	TA TA	T T	1	a0001c0001t0004g0013 a0001c0001t0004g0013	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.31+46delT c.31+46delT	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120959397
chrX:120959417	G G	C C	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	NA18944.hp1 NA18944.hp1	intron_variant	MODIFIER	c.31+27C>G c.31+27C>G	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120959417
chrX:120959425	CA CA	C C	1	a0003c0007t0007g0029 a0003c0007t0007g0029	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.31+18delT c.31+18delT	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	2/2	chrX	120959425
chrX:120959806	G G	A A	1	a0001c0001t0004g0013 a0001c0001t0004g0013	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.743-207C>T c.743-207C>T	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120959806
chrX:120959837	TC TC	T T	1	a0010c0008t0005g0014 a0010c0008t0005g0014	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.743-239delG c.743-239delG	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120959837
chrX:120959899	T T	TC TC	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG02683.hp2 HG02683.hp2	intron_variant	MODIFIER	c.743-301dupG c.743-301dupG	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120959899
chrX:120959914	C C	CG CG	1	a0001c0001t0004g0013 a0001c0001t0004g0013	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.743-316dupC c.743-316dupC	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120959914
chrX:120959937	TG TG	T T	1	a0003c0007t0007g0029 a0003c0007t0007g0029	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.743-339delC c.743-339delC	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120959937
chrX:120959976	G G	A A	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.743-377C>T c.743-377C>T	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120959976
chrX:120959996	A A	AC AC	2	a0003c0007t0007g0029 a0010c0008t0005g0014 a0003c0007t0007g0029 a0010c0008t0005g0014	2	HG00621.hp1 HG03139.hp1 HG00621.hp1 HG03139.hp1	intron_variant	MODIFIER	c.743-398dupG c.743-398dupG	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120959996
chrX:120960003	T T	C C	9	a0001c0001t0001g0004 a0001c0001t0001g0011 a0001c0004t0006g0020 others(6): Show a0001c0001t0001g0004 a0001c0001t0001g0011 a0001c0004t0006g0020 a0001c0016t0001g0028 a0003c0007t0007g0029 a0004c0015t0001g0027 a0005c0012t0001g0024 a0006c0009t0001g0019 a0010c0008t0005g0014	21	HG00140.hp1 HG00621.hp1 HG01099.hp1 others(18): Show HG00140.hp1 HG00621.hp1 HG01099.hp1 HG01123.hp2 HG01891.hp2 HG01975.hp2 HG02004.hp2 HG02027.hp1 HG02056.hp1 HG02135.hp1 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG03139.hp1 HG03195.hp1 HG03491.hp2 NA18948.hp1 NA19060.hp1 NA19070.hp1 NA19084.hp2	intron_variant	MODIFIER	c.743-404A>G c.743-404A>G	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960003
chrX:120960072	T T	G G	1	a0001c0001t0004g0013 a0001c0001t0004g0013	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.742+415A>C c.742+415A>C	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960072
chrX:120960130	CT CT	C C	1	a0003c0007t0007g0029 a0003c0007t0007g0029	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.742+356delA c.742+356delA	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960130
chrX:120960132	T T	G G	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.742+355A>C c.742+355A>C	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960132
chrX:120960186	G G	GC GC	1	a0003c0007t0007g0029 a0003c0007t0007g0029	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.742+300dupG c.742+300dupG	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960186
chrX:120960193	A A	T T	1	a0003c0007t0007g0029 a0003c0007t0007g0029	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.742+294T>A c.742+294T>A	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960193
chrX:120960237	C C	CA CA	1	a0003c0007t0007g0029 a0003c0007t0007g0029	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.742+249dupT c.742+249dupT	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960237
chrX:120960237	C C	G G	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.742+250G>C c.742+250G>C	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960237
chrX:120960340	A A	AG AG	1	a0010c0008t0005g0014 a0010c0008t0005g0014	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.742+146dupC c.742+146dupC	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960340
chrX:120960418	G G	A A	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.742+69C>T c.742+69C>T	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960418
chrX:120960456	T T	TC TC	2	a0003c0007t0007g0029 a0010c0008t0005g0014 a0003c0007t0007g0029 a0010c0008t0005g0014	2	HG00621.hp1 HG03139.hp1 HG00621.hp1 HG03139.hp1	intron_variant	MODIFIER	c.742+30dupG c.742+30dupG	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960456
chrX:120960456	TC TC	T T	1	a0001c0001t0004g0013 a0001c0001t0004g0013	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.742+30delG c.742+30delG	CT47A6	ENSG00000226023.6	transcript	ENST00000419194.3	protein_coding	1/2	chrX	120960456

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JoGo Online Haplotype Explorer CT47A6_chrX_120953165_120966487

JoGo Local Haplotype Explorer (on iGV) CT47A6_chrX_120953165_120966487

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 10)

CCoding Level Haplotype Info (Total: 16)

TTranscript Level Haplotype Info (Total: 8)

GGenebody Level Haplotype Info (Total: 31)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 16)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 22)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 31)

Haplotype Details by Sample (Haploid Level) (Total: 110)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 22)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 5)

TTranscript Level Haplotype Variants (Exon) (Total: 16)

GGenebody Level Haplotype Variants (Intron) (Total: 35)

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Annotation (Repeats)

Annotation (SNP Array)