Joint Open Genome and Omics Platform (JoGo)

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geneid	728075
ensemblid	ENSG00000230594.3
hgncid	33285
symbol	CT47A4
name	cancer/testis antigen family 47 member A4
refseq_nuc	NM_001080143.2
refseq_prot	NP_001073612.1
ensembl_nuc	ENST00000415858.3
ensembl_prot	ENSP00000389513.2
mane_status	MANE Select
chr	chrX
start	120967886
end	120971208
strand	-
ver	v1.2
region	chrX:120967886-120971208
region5000	chrX:120962886-120976208
regionname0	CT47A4_chrX_120967886_120971208
regionname5000	CT47A4_chrX_120962886_120976208

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	288	148	49	32	44	6	17	24	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0002	0/0	288	5	5	0	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0003	0/0	141	1	0	0	1	0	0	1	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0004	0/0	202	1	0	0	1	0	0	1	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0005	0/0	281	1	0	0	1	0	0	1	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0006	0/0	288	1	0	0	1	0	0	1	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0007	0/0	288	1	1	0	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0008	0/0	288	1	1	0	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0009	0/0	288	1	0	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0010	0/0	202	1	0	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0011	0/0	202	1	0	0	1	0	0	1	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0012	0/0	66	1	0	0	1	0	0	1	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0013	0/0	66	1	0	0	1	0	0	1	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	867	128	48	29	32	5	14	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0002	0/0	867	16	0	2	11	0	3	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0003	0/0	867	5	5	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0004	0/0	867	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0005	0/0	867	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0006	0/0	868	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0007	0/0	868	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0008	0/0	867	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0009	0/0	867	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0010	0/0	867	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0011	0/0	866	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0012	0/0	867	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0013	0/0	867	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0014	0/0	868	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0015	0/0	866	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0016	0/0	867	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0017	0/0	867	1	0	0	0	1	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
c0018	0/0	871	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	432	88	28	17	30	3	10	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
t0002	0/0	432	65	27	10	18	3	7	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
t0003	0/0	432	8	1	6	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
t0004	0/0	432	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
t0005	0/0	432	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
t0006	0/0	429	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	42	22	8	5	3	4	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0002	0/0	37	2	12	13	2	8	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0003	0/0	19	7	3	7	0	2	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0004	0/0	14	0	2	10	0	2	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0005	0/0	11	11	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0006	0/0	7	1	5	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0007	0/0	3	3	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0008	0/0	3	3	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0009	0/0	2	0	0	2	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0010	0/0	2	2	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0011	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0012	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0013	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0014	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0015	0/0	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0016	0/0	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0017	0/0	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0018	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0019	0/0	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0020	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0021	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0022	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0023	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0024	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0025	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0026	0/0	1	0	0	0	1	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0027	0/0	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0028	0/0	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0029	0/0	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0030	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0031	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0032	0/0	1	0	0	0	0	1	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0033	0/0	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
g0034	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	867	128	48	29	32	5	14	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0002	0/0	867	16	0	2	11	0	3	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0004	0/0	867	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0005	0/0	867	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0008	0/0	867	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0017	0/0	867	1	0	0	0	1	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0002c0003	0/0	867	5	5	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0003c0015	0/0	866	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0004c0007	0/0	868	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0005c0011	0/0	866	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0006c0010	0/0	867	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0007c0009	0/0	867	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0008c0012	0/0	867	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0009c0013	0/0	867	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0010c0006	0/0	868	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0011c0014	0/0	868	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0012c0016	0/0	867	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0013c0018	0/0	871	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1298	76	24	16	24	2	10	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0001t0002	0/0	1298	44	23	8	6	3	4	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0001t0003	0/0	1298	7	1	5	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0001t0006	0/0	1295	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0002t0002	0/0	1298	16	0	2	11	0	3	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0004t0002	0/0	1298	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0005t0001	0/0	1298	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0008t0001	0/0	1298	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0001c0017t0001	0/0	1298	1	0	0	0	1	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0002c0003t0001	0/0	1298	3	3	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0002c0003t0002	0/0	1298	2	2	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0003c0015t0002	0/0	1297	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0004c0007t0001	0/0	1299	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0005c0011t0005	0/0	1297	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0006c0010t0001	0/0	1298	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0007c0009t0001	0/0	1298	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0008c0012t0002	0/0	1298	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0009c0013t0003	0/0	1298	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0010c0006t0001	0/0	1299	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0011c0014t0001	0/0	1299	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0012c0016t0001	0/0	1298	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208
a0013c0018t0004	0/0	1302	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	copy fasta	chrX	120962886	120976208

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0002	0/0	37	2	12	13	2	8	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0001g0003	0/0	19	7	3	7	0	2	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0001g0005	0/0	11	11	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0001g0007	0/0	3	3	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0001g0009	0/0	2	0	0	2	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0001g0017	0/0	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0001g0019	0/0	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0001g0020	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0001g0022	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0002g0001	0/0	42	22	8	5	3	4	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0002g0029	0/0	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0002g0030	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0003g0006	0/0	7	1	5	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0001t0006g0021	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0002t0002g0004	0/0	14	0	2	10	0	2	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0002t0002g0031	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0002t0002g0032	0/0	1	0	0	0	0	1	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0004t0002g0028	0/0	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0005t0001g0012	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0008t0001g0015	0/0	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0001c0017t0001g0026	0/0	1	0	0	0	1	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0002c0003t0001g0008	0/0	3	3	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0002c0003t0002g0010	0/0	2	2	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0003c0015t0002g0034	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0004c0007t0001g0014	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0005c0011t0005g0023	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0006c0010t0001g0018	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0007c0009t0001g0016	0/0	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0008c0012t0002g0033	0/0	1	1	0	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0009c0013t0003g0027	0/0	1	0	1	0	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0010c0006t0001g0013	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0011c0014t0001g0024	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0012c0016t0001g0025	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
a0013c0018t0004g0011	0/0	1	0	0	1	0	0	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0017	t0001	g0026	EUR	GBR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00544	hp1	a0001	c0001	t0002	g0001	EAS	CHS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00544	hp2	a0010	c0006	t0001	g0013	EAS	CHS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00558	hp1	a0001	c0001	t0001	g0009	EAS	CHS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00558	hp2	a0001	c0001	t0001	g0002	EAS	CHS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00597	hp1	a0001	c0001	t0001	g0009	EAS	CHS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00597	hp2	a0001	c0001	t0001	g0003	EAS	CHS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00609	hp1	a0001	c0001	t0001	g0002	EAS	CHS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00642	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00673	hp1	a0001	c0001	t0002	g0030	EAS	CHS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00735	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00735	hp2	a0001	c0001	t0001	g0002	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00738	hp1	a0001	c0001	t0001	g0017	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00741	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG00741	hp2	a0009	c0013	t0003	g0027	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01069	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01071	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01071	hp2	a0001	c0001	t0001	g0002	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01074	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01099	hp1	a0001	c0001	t0001	g0003	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01106	hp1	a0001	c0001	t0003	g0006	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01169	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01169	hp2	a0001	c0001	t0002	g0001	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01175	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01175	hp2	a0001	c0001	t0003	g0006	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01192	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01255	hp1	a0001	c0001	t0001	g0002	AMR	CLM	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01258	hp1	a0001	c0008	t0001	g0015	AMR	CLM	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01261	hp1	a0001	c0001	t0002	g0001	AMR	CLM	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01346	hp1	a0001	c0001	t0002	g0001	AMR	CLM	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01346	hp2	a0001	c0002	t0002	g0004	AMR	CLM	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01358	hp1	a0001	c0001	t0002	g0001	AMR	CLM	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01361	hp1	a0001	c0001	t0003	g0006	AMR	CLM	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01361	hp2	a0001	c0002	t0002	g0004	AMR	CLM	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01433	hp1	a0001	c0001	t0003	g0006	AMR	CLM	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01515	hp1	a0001	c0001	t0002	g0001	EUR	IBS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01517	hp1	a0001	c0001	t0002	g0001	EUR	IBS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01517	hp2	a0001	c0001	t0001	g0002	EUR	IBS	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01884	hp1	a0001	c0001	t0001	g0005	AFR	ACB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01884	hp2	a0001	c0001	t0002	g0001	AFR	ACB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01928	hp1	a0001	c0001	t0001	g0002	AMR	PEL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01934	hp1	a0001	c0001	t0003	g0006	AMR	PEL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01952	hp1	a0001	c0001	t0001	g0002	AMR	PEL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01993	hp1	a0001	c0001	t0001	g0003	AMR	PEL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG01993	hp2	a0001	c0001	t0002	g0001	AMR	PEL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02004	hp1	a0001	c0001	t0001	g0002	AMR	PEL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02004	hp2	a0001	c0001	t0001	g0003	AMR	PEL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02015	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02027	hp1	a0001	c0005	t0001	g0012	EAS	KHV	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02055	hp1	a0001	c0001	t0002	g0001	AFR	ACB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02071	hp1	a0001	c0001	t0001	g0003	EAS	KHV	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02074	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02080	hp1	a0001	c0002	t0002	g0004	EAS	KHV	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02080	hp2	a0001	c0002	t0002	g0004	EAS	KHV	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02129	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02132	hp1	a0001	c0002	t0002	g0004	EAS	KHV	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02165	hp1	a0001	c0002	t0002	g0031	EAS	CDX	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02165	hp2	a0001	c0001	t0001	g0002	EAS	CDX	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02258	hp1	a0001	c0001	t0001	g0007	AFR	ACB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02523	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02523	hp2	a0001	c0002	t0002	g0004	EAS	KHV	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02572	hp1	a0002	c0003	t0002	g0010	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02615	hp1	a0001	c0001	t0001	g0005	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02615	hp2	a0001	c0001	t0002	g0001	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02622	hp1	a0001	c0001	t0001	g0003	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02622	hp2	a0001	c0001	t0001	g0007	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02630	hp1	a0001	c0001	t0002	g0001	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02630	hp2	a0001	c0001	t0002	g0029	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02647	hp1	a0001	c0001	t0002	g0001	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02717	hp1	a0001	c0001	t0002	g0001	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02723	hp1	a0001	c0001	t0001	g0019	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02723	hp2	a0001	c0001	t0002	g0001	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02809	hp1	a0001	c0001	t0001	g0005	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02809	hp2	a0001	c0001	t0002	g0001	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02818	hp1	a0001	c0001	t0001	g0003	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02818	hp2	a0001	c0001	t0001	g0003	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02886	hp1	a0001	c0001	t0001	g0002	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02886	hp2	a0001	c0001	t0002	g0001	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02895	hp1	a0001	c0001	t0002	g0001	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02897	hp1	a0001	c0001	t0001	g0005	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02897	hp2	a0001	c0001	t0002	g0001	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02965	hp1	a0001	c0001	t0001	g0005	AFR	ESN	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02970	hp1	a0001	c0001	t0002	g0001	AFR	ESN	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02970	hp2	a0002	c0003	t0001	g0008	AFR	ESN	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02976	hp1	a0001	c0004	t0002	g0028	AFR	ESN	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02976	hp2	a0001	c0001	t0001	g0005	AFR	ESN	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03041	hp1	a0001	c0001	t0002	g0001	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03041	hp2	a0001	c0001	t0001	g0003	AFR	GWD	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03098	hp1	a0002	c0003	t0001	g0008	AFR	MSL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03130	hp1	a0001	c0001	t0001	g0007	AFR	ESN	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03195	hp1	a0001	c0001	t0001	g0003	AFR	ESN	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03195	hp2	a0001	c0001	t0002	g0001	AFR	ESN	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03209	hp1	a0002	c0003	t0001	g0008	AFR	MSL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03225	hp1	a0001	c0001	t0002	g0001	AFR	MSL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03239	hp1	a0001	c0001	t0001	g0002	SAS	PJL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03239	hp2	a0001	c0001	t0001	g0003	SAS	PJL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03453	hp1	a0001	c0001	t0002	g0001	AFR	MSL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03453	hp2	a0001	c0001	t0002	g0001	AFR	MSL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03486	hp1	a0001	c0001	t0002	g0001	AFR	MSL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03486	hp2	a0001	c0001	t0002	g0001	AFR	MSL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03490	hp1	a0001	c0002	t0002	g0032	SAS	PJL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03492	hp1	a0001	c0001	t0002	g0001	SAS	PJL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03516	hp1	a0001	c0001	t0002	g0001	AFR	ESN	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03516	hp2	a0001	c0001	t0001	g0005	AFR	ESN	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03579	hp1	a0001	c0001	t0001	g0005	AFR	MSL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03654	hp1	a0001	c0002	t0002	g0004	SAS	PJL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03688	hp1	a0001	c0001	t0002	g0001	SAS	STU	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03704	hp1	a0001	c0001	t0001	g0002	SAS	PJL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03704	hp2	a0001	c0001	t0001	g0003	SAS	PJL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03831	hp1	a0001	c0001	t0001	g0002	SAS	BEB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03831	hp2	a0001	c0001	t0001	g0002	SAS	BEB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03834	hp1	a0001	c0001	t0001	g0002	SAS	BEB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03834	hp2	a0001	c0001	t0002	g0001	SAS	BEB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03942	hp1	a0001	c0001	t0001	g0002	SAS	BEB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG04199	hp1	a0001	c0002	t0002	g0004	SAS	STU	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG04204	hp1	a0001	c0001	t0001	g0002	SAS	STU	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG04228	hp1	a0001	c0001	t0001	g0002	SAS	STU	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18522	hp1	a0001	c0001	t0001	g0005	AFR	YRI	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18747	hp1	a0001	c0002	t0002	g0004	EAS	CHB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18943	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18944	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18945	hp1	a0001	c0001	t0001	g0022	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18948	hp1	a0011	c0014	t0001	g0024	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18960	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18962	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18966	hp1	a0001	c0002	t0002	g0004	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18968	hp1	a0013	c0018	t0004	g0011	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18968	hp2	a0004	c0007	t0001	g0014	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18970	hp1	a0001	c0001	t0001	g0020	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18971	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18977	hp1	a0001	c0002	t0002	g0004	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18979	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18979	hp2	a0001	c0001	t0006	g0021	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18981	hp1	a0005	c0011	t0005	g0023	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18981	hp2	a0001	c0002	t0002	g0004	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18982	hp1	a0003	c0015	t0002	g0034	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18983	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18986	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18992	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA18992	hp2	a0001	c0001	t0001	g0003	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19000	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19002	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19002	hp2	a0001	c0002	t0002	g0004	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19007	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19030	hp1	a0002	c0003	t0002	g0010	AFR	LWK	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19030	hp2	a0007	c0009	t0001	g0016	AFR	LWK	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19043	hp1	a0001	c0001	t0001	g0002	AFR	LWK	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19070	hp1	a0012	c0016	t0001	g0025	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19079	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19085	hp1	a0001	c0002	t0002	g0004	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19090	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19090	hp2	a0001	c0001	t0003	g0006	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19091	hp1	a0006	c0010	t0001	g0018	EAS	JPT	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19240	hp1	a0001	c0001	t0001	g0003	AFR	YRI	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA19240	hp2	a0001	c0001	t0002	g0001	AFR	YRI	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA20752	hp1	a0001	c0001	t0002	g0001	EUR	TSI	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA20805	hp1	a0001	c0001	t0001	g0002	EUR	TSI	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
NA20905	hp1	a0001	c0001	t0002	g0001	SAS	GIH	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02109	hp1	a0001	c0001	t0002	g0001	AFR	ACB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02109	hp2	a0001	c0001	t0003	g0006	AFR	ACB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG02486	hp1	a0001	c0001	t0001	g0005	AFR	ACB	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG03471	hp1	a0001	c0001	t0001	g0005	AFR	MSL	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG06807	hp1	a0001	c0001	t0001	g0003	AFR	USA	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208
HG06807	hp2	a0008	c0012	t0002	g0033	AFR	USA	CT47A4_chrX_120962886_120976208	CT47A4	chrX	120962886	120976208

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:120969223	GT GT	G G	1	a0005 a0005	1	NA18981.hp1 NA18981.hp1	frameshift_variant	HIGH	c.839delA c.839delA	p.Asn280fs p.Asn280fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/3	1098/1298	839/867	280/288	chrX	120969223
chrX:120969282	C C	G G	1	a0006 a0006	1	NA19091.hp1 NA19091.hp1	missense_variant	MODERATE	c.781G>C c.781G>C	p.Ala261Pro p.Ala261Pro	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/3	1040/1298	781/867	261/288	chrX	120969282
chrX:120970232	C C	T T	1	a0007 a0007	1	NA19030.hp2 NA19030.hp2	missense_variant	MODERATE	c.718G>A c.718G>A	p.Ala240Thr p.Ala240Thr	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	977/1298	718/867	240/288	chrX	120970232
chrX:120970319	G G	C C	1	a0002 a0002	5	HG02572.hp1 HG02970.hp2 HG03098.hp1 others(2): Show HG02572.hp1 HG02970.hp2 HG03098.hp1 HG03209.hp1 NA19030.hp1	missense_variant	MODERATE	c.631C>G c.631C>G	p.Pro211Ala p.Pro211Ala	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	890/1298	631/867	211/288	chrX	120970319
chrX:120970321	T T	TC TC	1	a0013 a0013	1	NA18968.hp1 NA18968.hp1	frameshift_variant	HIGH	c.628dupG c.628dupG	p.Glu210fs p.Glu210fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	887/1298	628/867	210/288	chrX	120970321
chrX:120970356	AG AG	A A	1	a0013 a0013	1	NA18968.hp1 NA18968.hp1	frameshift_variant	HIGH	c.593delC c.593delC	p.Pro198fs p.Pro198fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	852/1298	593/867	198/288	chrX	120970356
chrX:120970408	C C	CG CG	1	a0004 a0004	1	NA18968.hp2 NA18968.hp2	frameshift_variant	HIGH	c.541dupC c.541dupC	p.Arg181fs p.Arg181fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	800/1298	541/867	181/288	chrX	120970408
chrX:120970417	GC GC	G G	1	a0012 a0012	1	NA19070.hp1 NA19070.hp1	frameshift_variant	HIGH	c.532delG c.532delG	p.Ala178fs p.Ala178fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	791/1298	532/867	178/288	chrX	120970417
chrX:120970450	G G	C C	1	a0008 a0008	1	HG06807.hp2 HG06807.hp2	missense_variant	MODERATE	c.500C>G c.500C>G	p.Pro167Arg p.Pro167Arg	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	759/1298	500/867	167/288	chrX	120970450
chrX:120970477	G G	A A	1	a0009 a0009	1	HG00741.hp2 HG00741.hp2	missense_variant	MODERATE	c.473C>T c.473C>T	p.Ala158Val p.Ala158Val	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	732/1298	473/867	158/288	chrX	120970477
chrX:120970605	C C	CG CG	1	a0010 a0010	1	HG00544.hp2 HG00544.hp2	frameshift_variant	HIGH	c.344dupC c.344dupC	p.Ala116fs p.Ala116fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	603/1298	344/867	115/288	chrX	120970605
chrX:120970613	G G	GA GA	1	a0011 a0011	1	NA18948.hp1 NA18948.hp1	frameshift_variant	HIGH	c.336dupT c.336dupT	p.Arg113fs p.Arg113fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	595/1298	336/867	112/288	chrX	120970613
chrX:120970648	T T	C C	1	a0013 a0013	1	NA18968.hp1 NA18968.hp1	missense_variant	MODERATE	c.302A>G c.302A>G	p.Glu101Gly p.Glu101Gly	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	561/1298	302/867	101/288	chrX	120970648
chrX:120970682	C C	CG CG	1	a0013 a0013	1	NA18968.hp1 NA18968.hp1	frameshift_variant	HIGH	c.267dupC c.267dupC	p.Ala90fs p.Ala90fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	526/1298	267/867	89/288	chrX	120970682
chrX:120970715	C C	CAG CAG	1	a0013 a0013	1	NA18968.hp1 NA18968.hp1	frameshift_variant	HIGH	c.234_235insCT c.234_235insCT	p.Gly79fs p.Gly79fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	493/1298	234/867	78/288	chrX	120970715
chrX:120970720	CG CG	C C	1	a0003 a0003	1	NA18982.hp1 NA18982.hp1	frameshift_variant	HIGH	c.229delC c.229delC	p.Arg77fs p.Arg77fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	488/1298	229/867	77/288	chrX	120970720
chrX:120970770	G G	GC GC	1	a0012 a0012	1	NA19070.hp1 NA19070.hp1	frameshift_variant	HIGH	c.179dupG c.179dupG	p.Leu61fs p.Leu61fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	438/1298	179/867	60/288	chrX	120970770
chrX:120970813	A A	AC AC	1	a0013 a0013	1	NA18968.hp1 NA18968.hp1	frameshift_variant	HIGH	c.136dupG c.136dupG	p.Val46fs p.Val46fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	395/1298	136/867	46/288	chrX	120970813
chrX:120970909	TG TG	T T	1	a0013 a0013	1	NA18968.hp1 NA18968.hp1	frameshift_variant	HIGH	c.40delC c.40delC	p.Gln14fs p.Gln14fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	299/1298	40/867	14/288	chrX	120970909
chrX:120970933	T T	TC TC	1	a0013 a0013	1	NA18968.hp1 NA18968.hp1	frameshift_variant	HIGH	c.16dupG c.16dupG	p.Asp6fs p.Asp6fs	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	275/1298	16/867	6/288	chrX	120970933

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:120969229	C C	T T	1	a0001c0008 a0001c0008	1	HG01258.hp1 HG01258.hp1	synonymous_variant	LOW	c.834G>A c.834G>A	p.Ala278Ala p.Ala278Ala	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/3	1093/1298	834/867	278/288	chrX	120969229
chrX:120970251	C C	T T	1	a0001c0008 a0001c0008	1	HG01258.hp1 HG01258.hp1	synonymous_variant	LOW	c.699G>A c.699G>A	p.Pro233Pro p.Pro233Pro	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	958/1298	699/867	233/288	chrX	120970251
chrX:120970335	G G	C C	2	a0001c0002 a0003c0015 a0001c0002 a0003c0015	17	HG01346.hp2 HG01361.hp2 HG02080.hp1 others(14): Show HG01346.hp2 HG01361.hp2 HG02080.hp1 HG02080.hp2 HG02132.hp1 HG02165.hp1 HG02523.hp2 HG03490.hp1 HG03654.hp1 HG04199.hp1 NA18747.hp1 NA18966.hp1 NA18977.hp1 NA18981.hp2 NA18982.hp1 NA19002.hp2 NA19085.hp1	synonymous_variant	LOW	c.615C>G c.615C>G	p.Ala205Ala p.Ala205Ala	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	874/1298	615/867	205/288	chrX	120970335
chrX:120970626	C C	T T	1	a0001c0005 a0001c0005	1	HG02027.hp1 HG02027.hp1	synonymous_variant	LOW	c.324G>A c.324G>A	p.Ala108Ala p.Ala108Ala	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	583/1298	324/867	108/288	chrX	120970626
chrX:120970716	G G	C C	1	a0013c0018 a0013c0018	1	NA18968.hp1 NA18968.hp1	synonymous_variant	LOW	c.234C>G c.234C>G	p.Gly78Gly p.Gly78Gly	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	493/1298	234/867	78/288	chrX	120970716
chrX:120970869	C C	T T	1	a0001c0004 a0001c0004	1	HG02976.hp1 HG02976.hp1	synonymous_variant	LOW	c.81G>A c.81G>A	p.Ala27Ala p.Ala27Ala	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	340/1298	81/867	27/288	chrX	120970869
chrX:120970932	G G	A A	1	a0001c0017 a0001c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.18C>T c.18C>T	p.Asp6Asp p.Asp6Asp	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	277/1298	18/867	6/288	chrX	120970932

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:120967895	AT AT	A A	1	a0001c0001t0006 a0001c0001t0006	1	NA18979.hp2 NA18979.hp2	3_prime_UTR_variant	MODIFIER	c.162delA c.162delA	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	3/3	1300	chrX	120967895
chrX:120967916	A A	AT AT	1	a0005c0011t0005 a0005c0011t0005	1	NA18981.hp1 NA18981.hp1	3_prime_UTR_variant	MODIFIER	c.141dupA c.141dupA	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	3/3	1279	chrX	120967916
chrX:120967923	AAC AAC	A A	1	a0001c0001t0006 a0001c0001t0006	1	NA18979.hp2 NA18979.hp2	3_prime_UTR_variant	MODIFIER	c.133_134delGT c.133_134delGT	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	3/3	1271	chrX	120967923
chrX:120967926	T T	C C	1	a0001c0001t0006 a0001c0001t0006	1	NA18979.hp2 NA18979.hp2	3_prime_UTR_variant	MODIFIER	c.132A>G c.132A>G	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	3/3	1270	chrX	120967926
chrX:120967945	T T	TC TC	1	a0001c0001t0006 a0001c0001t0006	1	NA18979.hp2 NA18979.hp2	3_prime_UTR_variant	MODIFIER	c.112dupG c.112dupG	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	3/3	1250	chrX	120967945
chrX:120967994	TG TG	T T	2	a0001c0001t0006 a0005c0011t0005 a0001c0001t0006 a0005c0011t0005	2	NA18979.hp2 NA18981.hp1 NA18979.hp2 NA18981.hp1	3_prime_UTR_variant	MODIFIER	c.63delC c.63delC	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	3/3	1201	chrX	120967994
chrX:120970993	G G	T T	1	a0013c0018t0004 a0013c0018t0004	1	NA18968.hp1 NA18968.hp1	5_prime_UTR_variant	MODIFIER	c.-44C>A c.-44C>A	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	44	chrX	120970993
chrX:120971052	G G	GC GC	1	a0013c0018t0004 a0013c0018t0004	1	NA18968.hp1 NA18968.hp1	5_prime_UTR_variant	MODIFIER	c.-104dupG c.-104dupG	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	104	chrX	120971052
chrX:120971064	A A	G G	2	a0001c0001t0003 a0009c0013t0003 a0001c0001t0003 a0009c0013t0003	8	HG00741.hp2 HG01106.hp1 HG01175.hp2 others(5): Show HG00741.hp2 HG01106.hp1 HG01175.hp2 HG01361.hp1 HG01433.hp1 HG01934.hp1 HG02109.hp2 NA19090.hp2	5_prime_UTR_variant	MODIFIER	c.-115T>C c.-115T>C	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	115	chrX	120971064
chrX:120971084	TG TG	T T	1	a0013c0018t0004 a0013c0018t0004	1	NA18968.hp1 NA18968.hp1	5_prime_UTR_variant	MODIFIER	c.-136delC c.-136delC	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	136	chrX	120971084
chrX:120971205	T T	C C	8	a0001c0001t0002 a0001c0001t0003 a0001c0002t0002 others(5): Show a0001c0001t0002 a0001c0001t0003 a0001c0002t0002 a0001c0004t0002 a0002c0003t0002 a0003c0015t0002 a0008c0012t0002 a0009c0013t0003	73	HG00544.hp1 HG00673.hp1 HG00741.hp2 others(70): Show HG00544.hp1 HG00673.hp1 HG00741.hp2 HG01071.hp1 HG01106.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01517.hp1 HG01884.hp2 HG01934.hp1 HG01993.hp2 HG02055.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02165.hp1 HG02523.hp2 HG02572.hp1 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02723.hp2 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02970.hp1 HG02976.hp1 HG03041.hp1 HG03195.hp2 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03654.hp1 HG03688.hp1 HG03834.hp2 HG04199.hp1 HG06807.hp2 NA18747.hp1 NA18962.hp1 NA18966.hp1 NA18977.hp1 NA18979.hp1 NA18981.hp2 NA18982.hp1 NA18992.hp1 NA19000.hp1 NA19002.hp2 NA19030.hp1 NA19085.hp1 NA19090.hp2 NA19240.hp2 NA20752.hp1 NA20905.hp1	5_prime_UTR_variant	MODIFIER	c.-256A>G c.-256A>G	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/3	256	chrX	120971205

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:120968080	G G	A A	26	a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0007 others(23): Show a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0019 a0001c0001t0001g0022 a0001c0001t0002g0001 a0001c0001t0002g0030 a0001c0001t0003g0006 a0001c0001t0006g0021 a0001c0002t0002g0004 a0001c0002t0002g0031 a0001c0002t0002g0032 a0001c0004t0002g0028 a0001c0005t0001g0012 a0001c0017t0001g0026 a0002c0003t0001g0008 a0002c0003t0002g0010 a0003c0015t0002g0034 a0005c0011t0005g0023 a0007c0009t0001g0016 a0008c0012t0002g0033 a0009c0013t0003g0027 a0010c0006t0001g0013 a0011c0014t0001g0024 a0012c0016t0001g0025 a0013c0018t0004g0011	119	HG00140.hp1 HG00544.hp1 HG00544.hp2 others(116): Show HG00140.hp1 HG00544.hp1 HG00544.hp2 HG00597.hp2 HG00673.hp1 HG00741.hp2 HG01071.hp1 HG01099.hp1 HG01106.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01517.hp1 HG01884.hp1 HG01884.hp2 HG01934.hp1 HG01993.hp1 HG01993.hp2 HG02004.hp2 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02165.hp1 HG02258.hp1 HG02486.hp1 HG02523.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp2 HG03834.hp2 HG04199.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18747.hp1 NA18945.hp1 NA18948.hp1 NA18960.hp1 NA18962.hp1 NA18966.hp1 NA18968.hp1 NA18971.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18986.hp1 NA18992.hp1 NA18992.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19030.hp1 NA19030.hp2 NA19070.hp1 NA19085.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20752.hp1 NA20905.hp1	intron_variant	MODIFIER	c.32-54C>T c.32-54C>T	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968080
chrX:120968138	A A	G G	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	HG02723.hp1 HG02723.hp1	intron_variant	MODIFIER	c.32-112T>C c.32-112T>C	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968138
chrX:120968201	T T	TA TA	1	a0001c0001t0006g0021 a0001c0001t0006g0021	1	NA18979.hp2 NA18979.hp2	intron_variant	MODIFIER	c.32-176dupT c.32-176dupT	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968201
chrX:120968234	TA TA	T T	1	a0001c0001t0006g0021 a0001c0001t0006g0021	1	NA18979.hp2 NA18979.hp2	intron_variant	MODIFIER	c.32-209delT c.32-209delT	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968234
chrX:120968278	T T	TG TG	1	a0001c0001t0006g0021 a0001c0001t0006g0021	1	NA18979.hp2 NA18979.hp2	intron_variant	MODIFIER	c.32-253_32-252ins others(1): Show c.32-253_32-252insC	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968278
chrX:120968386	CA CA	C C	1	a0001c0001t0006g0021 a0001c0001t0006g0021	1	NA18979.hp2 NA18979.hp2	intron_variant	MODIFIER	c.32-361delT c.32-361delT	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968386
chrX:120968403	TC TC	T T	1	a0001c0001t0006g0021 a0001c0001t0006g0021	1	NA18979.hp2 NA18979.hp2	intron_variant	MODIFIER	c.32-378delG c.32-378delG	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968403
chrX:120968440	GT GT	G G	1	a0001c0001t0006g0021 a0001c0001t0006g0021	1	NA18979.hp2 NA18979.hp2	intron_variant	MODIFIER	c.32-415delA c.32-415delA	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968440
chrX:120968446	G G	A A	1	a0001c0001t0002g0030 a0001c0001t0002g0030	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.32-420C>T c.32-420C>T	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968446
chrX:120968471	G G	A A	1	a0001c0002t0002g0032 a0001c0002t0002g0032	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.32-445C>T c.32-445C>T	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968471
chrX:120968503	TA TA	T T	1	a0001c0001t0006g0021 a0001c0001t0006g0021	1	NA18979.hp2 NA18979.hp2	intron_variant	MODIFIER	c.32-478delT c.32-478delT	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968503
chrX:120968522	GA GA	G G	1	a0001c0001t0006g0021 a0001c0001t0006g0021	1	NA18979.hp2 NA18979.hp2	intron_variant	MODIFIER	c.32-497delT c.32-497delT	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968522
chrX:120968559	TG TG	T T	1	a0001c0001t0006g0021 a0001c0001t0006g0021	1	NA18979.hp2 NA18979.hp2	intron_variant	MODIFIER	c.32-534delC c.32-534delC	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968559
chrX:120968667	TA TA	T T	1	a0001c0001t0006g0021 a0001c0001t0006g0021	1	NA18979.hp2 NA18979.hp2	intron_variant	MODIFIER	c.31+497delT c.31+497delT	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968667
chrX:120968669	AT AT	A A	1	a0005c0011t0005g0023 a0005c0011t0005g0023	1	NA18981.hp1 NA18981.hp1	intron_variant	MODIFIER	c.31+495delA c.31+495delA	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968669
chrX:120968670	T T	C C	10	a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0022 others(7): Show a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0022 a0001c0001t0006g0021 a0001c0005t0001g0012 a0001c0017t0001g0026 a0010c0006t0001g0013 a0011c0014t0001g0024 a0012c0016t0001g0025 a0013c0018t0004g0011	29	HG00140.hp1 HG00544.hp2 HG00558.hp1 others(26): Show HG00140.hp1 HG00544.hp2 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG01099.hp1 HG01993.hp1 HG02004.hp2 HG02027.hp1 HG02071.hp1 HG02622.hp1 HG02818.hp1 HG02818.hp2 HG03041.hp2 HG03195.hp1 HG03239.hp2 HG03704.hp2 HG06807.hp1 NA18945.hp1 NA18948.hp1 NA18960.hp1 NA18968.hp1 NA18971.hp1 NA18979.hp2 NA18986.hp1 NA18992.hp2 NA19002.hp1 NA19070.hp1 NA19240.hp1	intron_variant	MODIFIER	c.31+495A>G c.31+495A>G	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968670
chrX:120968731	T T	G G	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	NA18970.hp1 NA18970.hp1	intron_variant	MODIFIER	c.31+434A>C c.31+434A>C	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968731
chrX:120968953	A A	G G	5	a0001c0001t0001g0009 a0001c0001t0001g0022 a0001c0001t0006g0021 others(2): Show a0001c0001t0001g0009 a0001c0001t0001g0022 a0001c0001t0006g0021 a0005c0011t0005g0023 a0010c0006t0001g0013	6	HG00544.hp2 HG00558.hp1 HG00597.hp1 others(3): Show HG00544.hp2 HG00558.hp1 HG00597.hp1 NA18945.hp1 NA18979.hp2 NA18981.hp1	intron_variant	MODIFIER	c.31+212T>C c.31+212T>C	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	2/2	chrX	120968953
chrX:120969373	GC GC	G G	1	a0005c0011t0005g0023 a0005c0011t0005g0023	1	NA18981.hp1 NA18981.hp1	intron_variant	MODIFIER	c.743-54delG c.743-54delG	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120969373
chrX:120969562	AC AC	A A	1	a0005c0011t0005g0023 a0005c0011t0005g0023	1	NA18981.hp1 NA18981.hp1	intron_variant	MODIFIER	c.743-243delG c.743-243delG	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120969562
chrX:120969724	T T	C C	11	a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0022 others(8): Show a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0022 a0001c0001t0006g0021 a0001c0005t0001g0012 a0001c0017t0001g0026 a0005c0011t0005g0023 a0010c0006t0001g0013 a0011c0014t0001g0024 a0012c0016t0001g0025 a0013c0018t0004g0011	30	HG00140.hp1 HG00544.hp2 HG00558.hp1 others(27): Show HG00140.hp1 HG00544.hp2 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG01099.hp1 HG01993.hp1 HG02004.hp2 HG02027.hp1 HG02071.hp1 HG02622.hp1 HG02818.hp1 HG02818.hp2 HG03041.hp2 HG03195.hp1 HG03239.hp2 HG03704.hp2 HG06807.hp1 NA18945.hp1 NA18948.hp1 NA18960.hp1 NA18968.hp1 NA18971.hp1 NA18979.hp2 NA18981.hp1 NA18986.hp1 NA18992.hp2 NA19002.hp1 NA19070.hp1 NA19240.hp1	intron_variant	MODIFIER	c.743-404A>G c.743-404A>G	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120969724
chrX:120969853	T T	G G	1	a0001c0001t0001g0007 a0001c0001t0001g0007	3	HG02258.hp1 HG02622.hp2 HG03130.hp1 HG02258.hp1 HG02622.hp2 HG03130.hp1	intron_variant	MODIFIER	c.742+355A>C c.742+355A>C	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120969853
chrX:120969863	CT CT	C C	1	a0012c0016t0001g0025 a0012c0016t0001g0025	1	NA19070.hp1 NA19070.hp1	intron_variant	MODIFIER	c.742+344delA c.742+344delA	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120969863
chrX:120970087	C C	T T	1	a0001c0002t0002g0031 a0001c0002t0002g0031	1	HG02165.hp1 HG02165.hp1	intron_variant	MODIFIER	c.742+121G>A c.742+121G>A	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120970087
chrX:120970091	GC GC	G G	1	a0013c0018t0004g0011 a0013c0018t0004g0011	1	NA18968.hp1 NA18968.hp1	intron_variant	MODIFIER	c.742+116delG c.742+116delG	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120970091
chrX:120970097	A A	AC AC	1	a0011c0014t0001g0024 a0011c0014t0001g0024	1	NA18948.hp1 NA18948.hp1	intron_variant	MODIFIER	c.742+110dupG c.742+110dupG	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120970097
chrX:120970125	T T	TA TA	1	a0013c0018t0004g0011 a0013c0018t0004g0011	1	NA18968.hp1 NA18968.hp1	intron_variant	MODIFIER	c.742+82dupT c.742+82dupT	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120970125
chrX:120970153	C C	CT CT	1	a0013c0018t0004g0011 a0013c0018t0004g0011	1	NA18968.hp1 NA18968.hp1	intron_variant	MODIFIER	c.742+54_742+55insA c.742+54_742+55insA	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120970153
chrX:120970155	C C	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.742+53G>A c.742+53G>A	CT47A4	ENSG00000230594.3	transcript	ENST00000415858.3	protein_coding	1/2	chrX	120970155

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JoGo Online Haplotype Explorer CT47A4_chrX_120962886_120976208

JoGo Local Haplotype Explorer (on iGV) CT47A4_chrX_120962886_120976208

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 13)

CCoding Level Haplotype Info (Total: 18)

TTranscript Level Haplotype Info (Total: 6)

GGenebody Level Haplotype Info (Total: 34)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 18)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 22)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 34)

Haplotype Details by Sample (Haploid Level) (Total: 164)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 20)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 7)

TTranscript Level Haplotype Variants (Exon) (Total: 11)

GGenebody Level Haplotype Variants (Intron) (Total: 29)

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Annotation (Repeats)

Annotation (SNP Array)