Joint Open Genome and Omics Platform (JoGo)

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geneid	728082
ensemblid	ENSG00000236126.3
hgncid	33284
symbol	CT47A3
name	cancer/testis antigen family 47 member A3
refseq_nuc	NM_001080144.2
refseq_prot	NP_001073613.1
ensembl_nuc	ENST00000441330.3
ensembl_prot	ENSP00000398559.2
mane_status	MANE Select
chr	chrX
start	120972746
end	120976068
strand	-
ver	v1.2
region	chrX:120972746-120976068
region5000	chrX:120967746-120981068
regionname0	CT47A3_chrX_120972746_120976068
regionname5000	CT47A3_chrX_120967746_120981068

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0000	0/0	0	1	1	0	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001	0/0	288	186	55	42	56	6	27	35	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0002	0/0	288	2	2	0	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0003	0/0	288	2	2	0	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0004	0/0	288	2	0	0	2	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0005	0/0	288	1	0	0	1	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0006	0/0	113	1	1	0	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0007	0/0	288	1	1	0	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0008	0/0	288	1	0	0	0	0	1	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0009	0/0	202	1	0	0	1	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0010	0/0	288	1	0	0	1	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0011	0/0	288	1	1	0	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0012	0/0	31	1	0	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	867	178	54	39	54	6	25	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0002	0/0	867	4	0	1	2	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0003	0/0	867	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0004	0/0	867	2	0	0	2	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0005	0/0	867	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0006	0/0	867	2	0	2	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0007	0/0	867	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0008	0/0	868	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0009	0/0	867	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0010	0/0	867	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0011	0/0	869	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0012	0/0	867	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0013	0/0	867	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0014	0/0	867	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0015	0/0	866	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0016	0/0	867	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
c0017	0/0	903	1	0	0	0	1	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	432	109	24	21	42	4	18	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
t0002	0/0	432	85	35	20	18	2	10	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
t0003	0/0	432	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
t0004	0/0	433	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
t0005	0/0	431	1	0	1	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
t0006	0/0	433	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
t0007	0/0	434	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
t0008	0/0	433	1	0	0	0	1	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	71	27	18	15	2	9	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0002	0/0	45	1	12	21	3	8	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0003	0/0	18	2	3	12	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0004	0/0	6	5	1	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0005	0/0	6	1	1	2	0	2	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0006	0/0	4	4	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0007	0/0	4	0	1	2	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0008	0/0	3	0	1	0	0	2	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0009	0/0	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0010	0/0	2	0	0	2	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0011	0/0	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0012	0/0	2	0	1	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0013	0/0	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0014	0/0	2	0	2	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0015	0/0	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0016	0/0	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0017	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0018	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0019	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0020	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0021	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0022	0/0	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0023	0/0	1	0	0	0	1	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0024	0/0	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0025	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0026	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0027	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0028	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0029	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0030	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0031	0/0	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0032	0/0	1	0	1	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0033	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0034	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0035	0/0	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0036	0/0	1	0	0	0	1	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0037	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0038	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0039	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0040	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0041	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0042	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0043	0/0	1	0	1	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
g0044	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0000c0015	0/0	866	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0001	0/0	867	178	54	39	54	6	25	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0002	0/0	867	4	0	1	2	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0006	0/0	867	2	0	2	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0012	0/0	867	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0013	0/0	867	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0002c0003	0/0	867	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0003c0005	0/0	867	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0004c0004	0/0	867	2	0	0	2	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0005c0010	0/0	867	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0006c0011	0/0	869	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0007c0014	0/0	867	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0008c0016	0/0	867	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0009c0008	0/0	868	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0010c0009	0/0	867	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0011c0007	0/0	867	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0012c0017	0/0	903	1	0	0	0	1	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0000c0015t0007	0/0	1299	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0001t0001	0/0	1298	96	20	19	37	4	16	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0001t0002	0/0	1298	78	32	19	16	2	9	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0001t0003	0/0	1298	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0001t0005	0/0	1297	1	0	1	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0001t0006	0/0	1299	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0002t0002	0/0	1298	4	0	1	2	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0006t0001	0/0	1298	2	0	2	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0012t0001	0/0	1298	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0001c0013t0001	0/0	1298	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0002c0003t0001	0/0	1298	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0003c0005t0001	0/0	1298	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0003c0005t0002	0/0	1298	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0004c0004t0001	0/0	1298	2	0	0	2	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0005c0010t0001	0/0	1298	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0006c0011t0004	0/0	1301	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0007c0014t0002	0/0	1298	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0008c0016t0001	0/0	1298	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0009c0008t0001	0/0	1299	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0010c0009t0001	0/0	1298	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0011c0007t0002	0/0	1298	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068
a0012c0017t0008	0/0	1335	1	0	0	0	1	0	CT47A3_chrX_120967746_120981068	CT47A3	copy fasta	chrX	120967746	120981068

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0000c0015t0007g0033	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0002	0/0	45	1	12	21	3	8	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0003	0/0	18	2	3	12	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0004	0/0	6	5	1	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0005	0/0	6	1	1	2	0	2	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0006	0/0	4	4	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0008	0/0	3	0	1	0	0	2	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0011	0/0	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0012	0/0	2	0	1	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0013	0/0	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0023	0/0	1	0	0	0	1	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0024	0/0	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0026	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0027	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0028	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0029	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0001g0031	0/0	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0002g0001	0/0	71	27	18	15	2	9	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0002g0016	0/0	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0002g0039	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0002g0040	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0002g0041	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0002g0042	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0002g0043	0/0	1	0	1	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0003g0015	0/0	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0005g0032	0/0	1	0	1	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0001t0006g0030	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0002t0002g0007	0/0	4	0	1	2	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0006t0001g0014	0/0	2	0	2	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0012t0001g0021	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0001c0013t0001g0022	0/0	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0002c0003t0001g0009	0/0	2	2	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0003c0005t0001g0034	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0003c0005t0002g0044	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0004c0004t0001g0010	0/0	2	0	0	2	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0005c0010t0001g0019	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0006c0011t0004g0020	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0007c0014t0002g0038	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0008c0016t0001g0035	0/0	1	0	0	0	0	1	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0009c0008t0001g0017	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0010c0009t0001g0018	0/0	1	0	0	1	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0011c0007t0002g0037	0/0	1	1	0	0	0	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
a0012c0017t0008g0036	0/0	1	0	0	0	1	0	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0012	c0017	t0008	g0036	EUR	GBR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00280	hp1	a0001	c0001	t0002	g0001	EUR	FIN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00323	hp1	a0001	c0001	t0001	g0002	EUR	FIN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00323	hp2	a0001	c0001	t0001	g0002	EUR	FIN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00408	hp1	a0004	c0004	t0001	g0010	EAS	CHS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00408	hp2	a0001	c0001	t0001	g0002	EAS	CHS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00544	hp1	a0001	c0001	t0002	g0001	EAS	CHS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00544	hp2	a0001	c0001	t0001	g0003	EAS	CHS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00558	hp1	a0010	c0009	t0001	g0018	EAS	CHS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00558	hp2	a0001	c0001	t0001	g0026	EAS	CHS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00597	hp1	a0009	c0008	t0001	g0017	EAS	CHS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00597	hp2	a0001	c0001	t0001	g0003	EAS	CHS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00609	hp1	a0001	c0001	t0001	g0002	EAS	CHS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00642	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00738	hp1	a0001	c0006	t0001	g0014	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00741	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG00741	hp2	a0001	c0001	t0002	g0001	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01071	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01071	hp2	a0001	c0001	t0002	g0001	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01074	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01081	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01081	hp2	a0001	c0001	t0001	g0002	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01099	hp1	a0001	c0001	t0001	g0012	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01106	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01169	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01169	hp2	a0001	c0001	t0002	g0001	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01175	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01175	hp2	a0001	c0001	t0002	g0001	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01192	hp1	a0001	c0001	t0001	g0002	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01243	hp1	a0001	c0001	t0002	g0001	AMR	PUR	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01255	hp1	a0001	c0001	t0001	g0002	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01258	hp1	a0001	c0001	t0001	g0002	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01261	hp1	a0001	c0001	t0002	g0001	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01346	hp1	a0001	c0001	t0002	g0001	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01346	hp2	a0001	c0002	t0002	g0007	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01358	hp1	a0001	c0001	t0002	g0001	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01361	hp1	a0001	c0001	t0002	g0001	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01361	hp2	a0001	c0001	t0002	g0001	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01433	hp1	a0001	c0001	t0002	g0001	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01496	hp1	a0001	c0001	t0001	g0004	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01496	hp2	a0001	c0001	t0001	g0002	AMR	CLM	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01517	hp1	a0001	c0001	t0002	g0001	EUR	IBS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01517	hp2	a0001	c0001	t0001	g0023	EUR	IBS	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01928	hp1	a0001	c0006	t0001	g0014	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01934	hp1	a0001	c0001	t0002	g0001	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01943	hp1	a0001	c0001	t0002	g0043	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01952	hp1	a0001	c0001	t0001	g0002	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01975	hp1	a0001	c0001	t0005	g0032	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01975	hp2	a0001	c0001	t0001	g0002	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01978	hp1	a0001	c0001	t0001	g0003	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01978	hp2	a0001	c0001	t0001	g0005	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01993	hp1	a0001	c0001	t0001	g0003	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG01993	hp2	a0001	c0001	t0002	g0001	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02004	hp1	a0001	c0001	t0001	g0008	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02004	hp2	a0001	c0001	t0001	g0003	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02040	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02055	hp1	a0001	c0001	t0002	g0039	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02056	hp1	a0001	c0001	t0001	g0003	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02071	hp1	a0001	c0001	t0001	g0005	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02074	hp1	a0001	c0001	t0001	g0025	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02080	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02080	hp2	a0001	c0001	t0002	g0001	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02083	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02129	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02132	hp1	a0001	c0001	t0002	g0001	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02145	hp1	a0001	c0001	t0002	g0016	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02148	hp1	a0001	c0001	t0002	g0001	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02148	hp2	a0001	c0001	t0002	g0001	AMR	PEL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02165	hp1	a0001	c0001	t0002	g0001	EAS	CDX	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02165	hp2	a0001	c0001	t0001	g0002	EAS	CDX	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02257	hp1	a0001	c0001	t0002	g0001	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02257	hp2	a0001	c0001	t0001	g0011	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02258	hp1	a0001	c0001	t0001	g0006	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02280	hp1	a0001	c0001	t0002	g0001	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02280	hp2	a0001	c0001	t0001	g0006	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02451	hp1	a0001	c0001	t0001	g0003	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02451	hp2	a0001	c0001	t0002	g0001	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02523	hp1	a0001	c0001	t0001	g0002	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02523	hp2	a0001	c0001	t0002	g0001	EAS	KHV	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02572	hp1	a0003	c0005	t0001	g0034	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02615	hp1	a0002	c0003	t0001	g0009	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02615	hp2	a0001	c0001	t0002	g0040	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02622	hp1	a0001	c0001	t0001	g0029	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02622	hp2	a0001	c0001	t0001	g0006	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02630	hp1	a0001	c0001	t0003	g0015	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02630	hp2	a0001	c0001	t0002	g0016	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02647	hp1	a0001	c0001	t0002	g0001	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02683	hp1	a0001	c0001	t0001	g0002	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02683	hp2	a0001	c0001	t0001	g0002	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02698	hp1	a0001	c0013	t0001	g0022	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02717	hp1	a0001	c0001	t0002	g0001	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02735	hp1	a0001	c0001	t0001	g0003	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02738	hp1	a0001	c0001	t0001	g0012	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02818	hp1	a0001	c0001	t0001	g0005	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02818	hp2	a0000	c0015	t0007	g0033	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02886	hp1	a0001	c0001	t0002	g0001	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02886	hp2	a0001	c0001	t0001	g0028	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02895	hp1	a0001	c0001	t0002	g0001	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02897	hp1	a0001	c0001	t0002	g0001	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02897	hp2	a0001	c0001	t0001	g0004	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02922	hp1	a0001	c0001	t0002	g0001	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02922	hp2	a0001	c0001	t0001	g0004	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02965	hp1	a0001	c0001	t0002	g0001	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02970	hp1	a0001	c0001	t0002	g0001	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02970	hp2	a0001	c0001	t0002	g0001	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02976	hp1	a0001	c0001	t0002	g0001	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02976	hp2	a0001	c0001	t0001	g0004	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03017	hp1	a0001	c0001	t0002	g0001	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03098	hp1	a0001	c0001	t0002	g0001	AFR	MSL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03130	hp1	a0001	c0001	t0001	g0006	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03139	hp1	a0001	c0001	t0002	g0042	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03195	hp1	a0001	c0001	t0001	g0013	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03195	hp2	a0001	c0001	t0002	g0001	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03225	hp1	a0001	c0001	t0002	g0001	AFR	MSL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03239	hp1	a0008	c0016	t0001	g0035	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03239	hp2	a0001	c0001	t0001	g0005	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03453	hp1	a0011	c0007	t0002	g0037	AFR	MSL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03453	hp2	a0001	c0001	t0002	g0001	AFR	MSL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03486	hp1	a0001	c0001	t0002	g0001	AFR	MSL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03486	hp2	a0001	c0001	t0003	g0015	AFR	MSL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03490	hp1	a0001	c0001	t0002	g0001	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03491	hp1	a0001	c0001	t0002	g0001	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03491	hp2	a0001	c0001	t0001	g0031	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03492	hp1	a0001	c0001	t0002	g0001	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03516	hp1	a0007	c0014	t0002	g0038	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03516	hp2	a0001	c0001	t0002	g0001	AFR	ESN	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03540	hp1	a0002	c0003	t0001	g0009	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03540	hp2	a0001	c0001	t0002	g0001	AFR	GWD	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03579	hp1	a0001	c0001	t0002	g0001	AFR	MSL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03654	hp1	a0001	c0001	t0002	g0001	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03688	hp1	a0001	c0001	t0002	g0001	SAS	STU	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03704	hp1	a0001	c0001	t0001	g0002	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03704	hp2	a0001	c0001	t0001	g0005	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03710	hp1	a0001	c0001	t0001	g0002	SAS	PJL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03831	hp1	a0001	c0001	t0001	g0002	SAS	BEB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03831	hp2	a0001	c0001	t0001	g0008	SAS	BEB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03834	hp1	a0001	c0001	t0001	g0002	SAS	BEB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03834	hp2	a0001	c0002	t0002	g0007	SAS	BEB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03942	hp1	a0001	c0001	t0001	g0002	SAS	BEB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG04184	hp1	a0001	c0001	t0001	g0008	SAS	BEB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG04184	hp2	a0001	c0001	t0002	g0001	SAS	BEB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG04199	hp1	a0001	c0001	t0002	g0001	SAS	STU	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG04204	hp1	a0001	c0001	t0001	g0002	SAS	STU	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG04228	hp1	a0001	c0001	t0001	g0024	SAS	STU	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18522	hp1	a0001	c0001	t0002	g0001	AFR	YRI	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18612	hp1	a0001	c0001	t0002	g0001	EAS	CHB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18747	hp1	a0001	c0001	t0002	g0001	EAS	CHB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18941	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18941	hp2	a0001	c0001	t0001	g0005	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18943	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18944	hp1	a0004	c0004	t0001	g0010	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18945	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18946	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18946	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18950	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18950	hp2	a0005	c0010	t0001	g0019	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18952	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18953	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18962	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18969	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18969	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18970	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18971	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18977	hp1	a0001	c0002	t0002	g0007	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18982	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18983	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18984	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA18986	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19002	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19002	hp2	a0001	c0001	t0002	g0001	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19005	hp1	a0001	c0001	t0006	g0030	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19006	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19007	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19009	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19030	hp1	a0003	c0005	t0002	g0044	AFR	LWK	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19030	hp2	a0001	c0001	t0001	g0004	AFR	LWK	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19043	hp1	a0001	c0012	t0001	g0021	AFR	LWK	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19056	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19064	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19064	hp2	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19066	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19068	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19079	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19085	hp1	a0001	c0001	t0002	g0001	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19088	hp1	a0001	c0001	t0001	g0002	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19090	hp1	a0001	c0001	t0002	g0041	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19090	hp2	a0001	c0002	t0002	g0007	EAS	JPT	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19240	hp1	a0001	c0001	t0001	g0013	AFR	YRI	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA19240	hp2	a0001	c0001	t0002	g0001	AFR	YRI	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA20805	hp1	a0001	c0001	t0001	g0002	EUR	TSI	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA20905	hp1	a0001	c0001	t0002	g0001	SAS	GIH	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02486	hp1	a0001	c0001	t0001	g0027	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02559	hp1	a0001	c0001	t0001	g0002	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG02559	hp2	a0001	c0001	t0002	g0001	AFR	ACB	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG03471	hp1	a0001	c0001	t0001	g0004	AFR	MSL	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG06807	hp1	a0001	c0001	t0002	g0001	AFR	USA	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
HG06807	hp2	a0001	c0001	t0001	g0011	AFR	USA	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA20300	hp1	a0001	c0001	t0001	g0003	AFR	USA	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA20300	hp2	a0006	c0011	t0004	g0020	AFR	USA	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA21309	hp1	a0001	c0001	t0002	g0001	AFR	LWK	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068
NA21309	hp2	a0001	c0001	t0002	g0001	AFR	LWK	CT47A3_chrX_120967746_120981068	CT47A3	chrX	120967746	120981068

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:120974071	GT GT	G G	1	a0000 a0000	1	HG02818.hp2 HG02818.hp2	frameshift_variant	HIGH	c.851delA c.851delA	p.Asn284fs p.Asn284fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/3	1110/1298	851/867	284/288	chrX	120974071
chrX:120974090	G G	A A	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.833C>T c.833C>T	p.Ala278Val p.Ala278Val	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/3	1092/1298	833/867	278/288	chrX	120974090
chrX:120974121	C C	T T	1	a0007 a0007	1	HG03516.hp1 HG03516.hp1	missense_variant	MODERATE	c.802G>A c.802G>A	p.Glu268Lys p.Glu268Lys	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/3	1061/1298	802/867	268/288	chrX	120974121
chrX:120974124	C C	CA CA	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.798_799insT c.798_799insT	p.Glu267fs p.Glu267fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/3	1057/1298	798/867	266/288	chrX	120974124
chrX:120974142	C C	G G	1	a0004 a0004	2	HG00408.hp1 NA18944.hp1 HG00408.hp1 NA18944.hp1	missense_variant	MODERATE	c.781G>C c.781G>C	p.Ala261Pro p.Ala261Pro	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/3	1040/1298	781/867	261/288	chrX	120974142
chrX:120974150	TC TC	T T	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.772delG c.772delG	p.Asp258fs p.Asp258fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/3	1031/1298	772/867	258/288	chrX	120974150
chrX:120975079	G G	A A	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.731C>T c.731C>T	p.Thr244Met p.Thr244Met	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	990/1298	731/867	244/288	chrX	120975079
chrX:120975080	T T	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.730A>G c.730A>G	p.Thr244Ala p.Thr244Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	989/1298	730/867	244/288	chrX	120975080
chrX:120975089	G G	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.721C>G c.721C>G	p.Gln241Glu p.Gln241Glu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	980/1298	721/867	241/288	chrX	120975089
chrX:120975092	C C	A A	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.718G>T c.718G>T	p.Ala240Ser p.Ala240Ser	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	977/1298	718/867	240/288	chrX	120975092
chrX:120975097	G G	A A	1	a0011 a0011	1	HG03453.hp1 HG03453.hp1	missense_variant	MODERATE	c.713C>T c.713C>T	p.Pro238Leu p.Pro238Leu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	972/1298	713/867	238/288	chrX	120975097
chrX:120975107	T T	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.703A>G c.703A>G	p.Thr235Ala p.Thr235Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	962/1298	703/867	235/288	chrX	120975107
chrX:120975121	G G	GTGGCCT GTGGCCT	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	conservative_inframe_insertion	MODERATE	c.688_689insAGGCCA c.688_689insAGGCCA	p.Ala230delinsGluAla others(3): Show p.Ala230delinsGluAlaThr	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	947/1298	688/867	230/288	chrX	120975121
chrX:120975123	G G	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.687C>G c.687C>G	p.Asp229Glu p.Asp229Glu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	946/1298	687/867	229/288	chrX	120975123
chrX:120975127	G G	GTGAGCT GTGAGCT	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	conservative_inframe_insertion	MODERATE	c.682_683insAGCTCA c.682_683insAGCTCA	p.Pro228delinsGlnLeu others(3): Show p.Pro228delinsGlnLeuThr	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	941/1298	682/867	228/288	chrX	120975127
chrX:120975128	G G	T T	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.682C>A c.682C>A	p.Pro228Thr p.Pro228Thr	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	941/1298	682/867	228/288	chrX	120975128
chrX:120975133	T T	TC TC	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.676dupG c.676dupG	p.Glu226fs p.Glu226fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	935/1298	676/867	226/288	chrX	120975133
chrX:120975137	T T	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.673A>G c.673A>G	p.Thr225Ala p.Thr225Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	932/1298	673/867	225/288	chrX	120975137
chrX:120975139	G G	GC GC	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.670dupG c.670dupG	p.Ala224fs p.Ala224fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	929/1298	670/867	224/288	chrX	120975139
chrX:120975149	A A	G G	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.661T>C c.661T>C	p.Ser221Pro p.Ser221Pro	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	920/1298	661/867	221/288	chrX	120975149
chrX:120975151	A A	G G	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.659T>C c.659T>C	p.Leu220Pro p.Leu220Pro	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	918/1298	659/867	220/288	chrX	120975151
chrX:120975159	C C	A A	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.651G>T c.651G>T	p.Glu217Asp p.Glu217Asp	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	910/1298	651/867	217/288	chrX	120975159
chrX:120975164	C C	CG CG	1	a0006 a0006	1	NA20300.hp2 NA20300.hp2	frameshift_variant	HIGH	c.645dupC c.645dupC	p.Ala216fs p.Ala216fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	904/1298	645/867	215/288	chrX	120975164
chrX:120975179	G G	C C	1	a0003 a0003	2	HG02572.hp1 NA19030.hp1 HG02572.hp1 NA19030.hp1	missense_variant	MODERATE	c.631C>G c.631C>G	p.Pro211Ala p.Pro211Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	890/1298	631/867	211/288	chrX	120975179
chrX:120975223	G G	GGGACGAC others(10): Show GGGACGACGCGGCCTCCT	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.586_587insAGGAGGCC others(9): Show c.586_587insAGGAGGCCGCGTCGTCC	p.Pro196fs p.Pro196fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	845/1298	586/867	196/288	chrX	120975223
chrX:120975265	G G	T T	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.545C>A c.545C>A	p.Ala182Glu p.Ala182Glu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	804/1298	545/867	182/288	chrX	120975265
chrX:120975268	C C	G G	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.542G>C c.542G>C	p.Arg181Pro p.Arg181Pro	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	801/1298	542/867	181/288	chrX	120975268
chrX:120975299	G G	A A	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.511C>T c.511C>T	p.Pro171Ser p.Pro171Ser	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	770/1298	511/867	171/288	chrX	120975299
chrX:120975310	G G	A A	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.500C>T c.500C>T	p.Pro167Leu p.Pro167Leu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	759/1298	500/867	167/288	chrX	120975310
chrX:120975316	A A	G G	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.494T>C c.494T>C	p.Leu165Pro p.Leu165Pro	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	753/1298	494/867	165/288	chrX	120975316
chrX:120975322	C C	T T	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.488G>A c.488G>A	p.Gly163Asp p.Gly163Asp	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	747/1298	488/867	163/288	chrX	120975322
chrX:120975334	C C	G G	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.476G>C c.476G>C	p.Arg159Pro p.Arg159Pro	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	735/1298	476/867	159/288	chrX	120975334
chrX:120975334	C C	T T	1	a0002 a0002	2	HG02615.hp1 HG03540.hp1 HG02615.hp1 HG03540.hp1	missense_variant	MODERATE	c.476G>A c.476G>A	p.Arg159His p.Arg159His	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	735/1298	476/867	159/288	chrX	120975334
chrX:120975337	G G	A A	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.473C>T c.473C>T	p.Ala158Val p.Ala158Val	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	732/1298	473/867	158/288	chrX	120975337
chrX:120975341	C C	CA CA	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.468dupT c.468dupT	p.Ala157fs p.Ala157fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	727/1298	468/867	156/288	chrX	120975341
chrX:120975372	T T	G G	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.438A>C c.438A>C	p.Gln146His p.Gln146His	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	697/1298	438/867	146/288	chrX	120975372
chrX:120975382	T T	G G	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.428A>C c.428A>C	p.Glu143Ala p.Glu143Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	687/1298	428/867	143/288	chrX	120975382
chrX:120975388	A A	T T	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.422T>A c.422T>A	p.Leu141His p.Leu141His	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	681/1298	422/867	141/288	chrX	120975388
chrX:120975406	G G	T T	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.404C>A c.404C>A	p.Ser135Tyr p.Ser135Tyr	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	663/1298	404/867	135/288	chrX	120975406
chrX:120975415	T T	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.395A>G c.395A>G	p.His132Arg p.His132Arg	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	654/1298	395/867	132/288	chrX	120975415
chrX:120975427	T T	G G	1	a0008 a0008	1	HG03239.hp1 HG03239.hp1	missense_variant	MODERATE	c.383A>C c.383A>C	p.His128Pro p.His128Pro	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	642/1298	383/867	128/288	chrX	120975427
chrX:120975434	T T	G G	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.376A>C c.376A>C	p.Met126Leu p.Met126Leu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	635/1298	376/867	126/288	chrX	120975434
chrX:120975437	C C	A A	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.373G>T c.373G>T	p.Asp125Tyr p.Asp125Tyr	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	632/1298	373/867	125/288	chrX	120975437
chrX:120975443	G G	A A	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.367C>T c.367C>T	p.Leu123Phe p.Leu123Phe	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	626/1298	367/867	123/288	chrX	120975443
chrX:120975451	T T	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.359A>G c.359A>G	p.His120Arg p.His120Arg	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	618/1298	359/867	120/288	chrX	120975451
chrX:120975452	G G	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.358C>G c.358C>G	p.His120Asp p.His120Asp	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	617/1298	358/867	120/288	chrX	120975452
chrX:120975456	GC GC	G G	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.353delG c.353delG	p.Gly118fs p.Gly118fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	612/1298	353/867	118/288	chrX	120975456
chrX:120975461	A A	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.349T>G c.349T>G	p.Ser117Ala p.Ser117Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	608/1298	349/867	117/288	chrX	120975461
chrX:120975468	G G	GT GT	1	a0006 a0006	1	NA20300.hp2 NA20300.hp2	frameshift_variant&stop_gained	HIGH	c.341dupA c.341dupA	p.Tyr114fs p.Tyr114fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	600/1298	341/867	114/288	chrX	120975468
chrX:120975479	C C	T T	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.331G>A c.331G>A	p.Ala111Thr p.Ala111Thr	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	590/1298	331/867	111/288	chrX	120975479
chrX:120975481	A A	G G	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.329T>C c.329T>C	p.Val110Ala p.Val110Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	588/1298	329/867	110/288	chrX	120975481
chrX:120975482	C C	G G	1	a0005 a0005	1	NA18950.hp2 NA18950.hp2	missense_variant	MODERATE	c.328G>C c.328G>C	p.Val110Leu p.Val110Leu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	587/1298	328/867	110/288	chrX	120975482
chrX:120975519	T T	TTCC TTCC	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	disruptive_inframe_insertion	MODERATE	c.288_290dupGGA c.288_290dupGGA	p.Glu97dup p.Glu97dup	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	549/1298	290/867	97/288	chrX	120975519
chrX:120975542	CG CG	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.267delC c.267delC	p.Ala90fs p.Ala90fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	526/1298	267/867	89/288	chrX	120975542
chrX:120975580	C C	CG CG	1	a0009 a0009	1	HG00597.hp1 HG00597.hp1	frameshift_variant	HIGH	c.229dupC c.229dupC	p.Arg77fs p.Arg77fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	488/1298	229/867	77/288	chrX	120975580
chrX:120975580	C C	T T	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.230G>A c.230G>A	p.Arg77Gln p.Arg77Gln	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	489/1298	230/867	77/288	chrX	120975580
chrX:120975647	C C	T T	2	a0009 a0010 a0009 a0010	2	HG00558.hp1 HG00597.hp1 HG00558.hp1 HG00597.hp1	missense_variant	MODERATE	c.163G>A c.163G>A	p.Ala55Thr p.Ala55Thr	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	422/1298	163/867	55/288	chrX	120975647
chrX:120975653	C C	T T	1	a0011 a0011	1	HG03453.hp1 HG03453.hp1	missense_variant	MODERATE	c.157G>A c.157G>A	p.Gly53Arg p.Gly53Arg	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	416/1298	157/867	53/288	chrX	120975653
chrX:120975667	G G	GC GC	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.142dupG c.142dupG	p.Ala48fs p.Ala48fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	401/1298	142/867	48/288	chrX	120975667
chrX:120975672	C C	CA CA	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.137dupT c.137dupT	p.Pro47fs p.Pro47fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	396/1298	137/867	46/288	chrX	120975672
chrX:120975677	C C	T T	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.133G>A c.133G>A	p.Val45Met p.Val45Met	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	392/1298	133/867	45/288	chrX	120975677
chrX:120975766	T T	C C	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.44A>G c.44A>G	p.Glu15Gly p.Glu15Gly	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	303/1298	44/867	15/288	chrX	120975766
chrX:120975767	C C	T T	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	missense_variant	MODERATE	c.43G>A c.43G>A	p.Glu15Lys p.Glu15Lys	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	302/1298	43/867	15/288	chrX	120975767
chrX:120975787	T T	TG TG	1	a0012 a0012	1	HG00140.hp1 HG00140.hp1	frameshift_variant	HIGH	c.22dupC c.22dupC	p.His8fs p.His8fs	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	281/1298	22/867	8/288	chrX	120975787

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:120974089	C C	T T	1	a0001c0006 a0001c0006	2	HG00738.hp1 HG01928.hp1 HG00738.hp1 HG01928.hp1	synonymous_variant	LOW	c.834G>A c.834G>A	p.Ala278Ala p.Ala278Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/3	1093/1298	834/867	278/288	chrX	120974089
chrX:120975072	T T	G G	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.738A>C c.738A>C	p.Pro246Pro p.Pro246Pro	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	997/1298	738/867	246/288	chrX	120975072
chrX:120975102	T T	C C	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.708A>G c.708A>G	p.Glu236Glu p.Glu236Glu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	967/1298	708/867	236/288	chrX	120975102
chrX:120975111	C C	T T	1	a0001c0013 a0001c0013	1	HG02698.hp1 HG02698.hp1	synonymous_variant	LOW	c.699G>A c.699G>A	p.Pro233Pro p.Pro233Pro	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	958/1298	699/867	233/288	chrX	120975111
chrX:120975129	T T	C C	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.681A>G c.681A>G	p.Glu227Glu p.Glu227Glu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	940/1298	681/867	227/288	chrX	120975129
chrX:120975153	C C	T T	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.657G>A c.657G>A	p.Lys219Lys p.Lys219Lys	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	916/1298	657/867	219/288	chrX	120975153
chrX:120975195	G G	C C	1	a0001c0002 a0001c0002	4	HG01346.hp2 HG03834.hp2 NA18977.hp1 others(1): Show HG01346.hp2 HG03834.hp2 NA18977.hp1 NA19090.hp2	synonymous_variant	LOW	c.615C>G c.615C>G	p.Ala205Ala p.Ala205Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	874/1298	615/867	205/288	chrX	120975195
chrX:120975231	T T	C C	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.579A>G c.579A>G	p.Ala193Ala p.Ala193Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	838/1298	579/867	193/288	chrX	120975231
chrX:120975234	G G	A A	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.576C>T c.576C>T	p.Ala192Ala p.Ala192Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	835/1298	576/867	192/288	chrX	120975234
chrX:120975252	C C	G G	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.558G>C c.558G>C	p.Leu186Leu p.Leu186Leu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	817/1298	558/867	186/288	chrX	120975252
chrX:120975264	C C	T T	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.546G>A c.546G>A	p.Ala182Ala p.Ala182Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	805/1298	546/867	182/288	chrX	120975264
chrX:120975276	G G	A A	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.534C>T c.534C>T	p.Ala178Ala p.Ala178Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	793/1298	534/867	178/288	chrX	120975276
chrX:120975315	G G	A A	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.495C>T c.495C>T	p.Leu165Leu p.Leu165Leu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	754/1298	495/867	165/288	chrX	120975315
chrX:120975348	T T	G G	2	a0001c0006 a0012c0017 a0001c0006 a0012c0017	3	HG00140.hp1 HG00738.hp1 HG01928.hp1 HG00140.hp1 HG00738.hp1 HG01928.hp1	synonymous_variant	LOW	c.462A>C c.462A>C	p.Pro154Pro p.Pro154Pro	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	721/1298	462/867	154/288	chrX	120975348
chrX:120975387	G G	C C	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.423C>G c.423C>G	p.Leu141Leu p.Leu141Leu	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	682/1298	423/867	141/288	chrX	120975387
chrX:120975462	C C	T T	1	a0001c0012 a0001c0012	1	NA19043.hp1 NA19043.hp1	synonymous_variant	LOW	c.348G>A c.348G>A	p.Ala116Ala p.Ala116Ala	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	607/1298	348/867	116/288	chrX	120975462
chrX:120975471	G G	C C	1	a0012c0017 a0012c0017	1	HG00140.hp1 HG00140.hp1	synonymous_variant	LOW	c.339C>G c.339C>G	p.Arg113Arg p.Arg113Arg	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	598/1298	339/867	113/288	chrX	120975471

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:120972755	A A	AT AT	1	a0000c0015t0007 a0000c0015t0007	1	HG02818.hp2 HG02818.hp2	3_prime_UTR_variant	MODIFIER	c.162dupA c.162dupA	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	3/3	1300	chrX	120972755
chrX:120972805	TC TC	T T	1	a0001c0001t0005 a0001c0001t0005	1	HG01975.hp1 HG01975.hp1	3_prime_UTR_variant	MODIFIER	c.112delG c.112delG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	3/3	1250	chrX	120972805
chrX:120972809	T T	TG TG	1	a0001c0001t0006 a0001c0001t0006	1	NA19005.hp1 NA19005.hp1	3_prime_UTR_variant	MODIFIER	c.108dupC c.108dupC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	3/3	1246	chrX	120972809
chrX:120972810	G G	GA GA	1	a0000c0015t0007 a0000c0015t0007	1	HG02818.hp2 HG02818.hp2	3_prime_UTR_variant	MODIFIER	c.107dupT c.107dupT	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	3/3	1245	chrX	120972810
chrX:120972835	C C	CT CT	1	a0006c0011t0004 a0006c0011t0004	1	NA20300.hp2 NA20300.hp2	3_prime_UTR_variant	MODIFIER	c.82dupA c.82dupA	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	3/3	1220	chrX	120972835
chrX:120975842	C C	CG CG	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-34dupC c.-34dupC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	34	chrX	120975842
chrX:120975862	G G	GA GA	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-54dupT c.-54dupT	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	54	chrX	120975862
chrX:120975919	AG AG	A A	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-111delC c.-111delC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	111	chrX	120975919
chrX:120975934	C C	T T	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-125G>A c.-125G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	125	chrX	120975934
chrX:120975949	G G	A A	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-140C>T c.-140C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	140	chrX	120975949
chrX:120975969	C C	G G	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-160G>C c.-160G>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	160	chrX	120975969
chrX:120975981	A A	G G	2	a0001c0001t0003 a0012c0017t0008 a0001c0001t0003 a0012c0017t0008	3	HG00140.hp1 HG02630.hp1 HG03486.hp2 HG00140.hp1 HG02630.hp1 HG03486.hp2	5_prime_UTR_variant	MODIFIER	c.-172T>C c.-172T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	172	chrX	120975981
chrX:120976008	A A	G G	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-199T>C c.-199T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	199	chrX	120976008
chrX:120976023	G G	T T	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-214C>A c.-214C>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	214	chrX	120976023
chrX:120976044	C C	T T	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-235G>A c.-235G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	235	chrX	120976044
chrX:120976048	T T	G G	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-239A>C c.-239A>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	239	chrX	120976048
chrX:120976049	T T	C C	1	a0012c0017t0008 a0012c0017t0008	1	HG00140.hp1 HG00140.hp1	5_prime_UTR_variant	MODIFIER	c.-240A>G c.-240A>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	240	chrX	120976049
chrX:120976065	T T	C C	6	a0001c0001t0002 a0001c0001t0003 a0001c0002t0002 others(3): Show a0001c0001t0002 a0001c0001t0003 a0001c0002t0002 a0003c0005t0002 a0007c0014t0002 a0011c0007t0002	87	HG00280.hp1 HG00544.hp1 HG00741.hp2 others(84): Show HG00280.hp1 HG00544.hp1 HG00741.hp2 HG01071.hp2 HG01106.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01517.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp2 HG02040.hp1 HG02055.hp1 HG02080.hp1 HG02080.hp2 HG02132.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02280.hp1 HG02451.hp2 HG02523.hp2 HG02559.hp2 HG02615.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02886.hp1 HG02895.hp1 HG02897.hp1 HG02922.hp1 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03834.hp2 HG04184.hp2 HG04199.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18962.hp1 NA18969.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA19002.hp2 NA19030.hp1 NA19085.hp1 NA19090.hp1 NA19090.hp2 NA19240.hp2 NA20905.hp1 NA21309.hp1 NA21309.hp2	5_prime_UTR_variant	MODIFIER	c.-256A>G c.-256A>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/3	256	chrX	120976065

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:120972907	A A	AT AT	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG03491.hp2 HG03491.hp2	intron_variant	MODIFIER	c.32-22_32-21insA c.32-22_32-21insA	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120972907
chrX:120972910	G G	GA GA	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	HG03491.hp2 HG03491.hp2	intron_variant	MODIFIER	c.32-25dupT c.32-25dupT	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120972910
chrX:120972913	C C	CA CA	1	a0001c0001t0005g0032 a0001c0001t0005g0032	1	HG01975.hp1 HG01975.hp1	intron_variant	MODIFIER	c.32-28dupT c.32-28dupT	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120972913
chrX:120972940	G G	A A	29	a0000c0015t0007g0033 a0001c0001t0001g0003 a0001c0001t0001g0004 others(26): Show a0000c0015t0007g0033 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0027 a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0002g0001 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0042 a0001c0001t0003g0015 a0001c0001t0005g0032 a0001c0001t0006g0030 a0001c0002t0002g0007 a0001c0012t0001g0021 a0002c0003t0001g0009 a0003c0005t0001g0034 a0003c0005t0002g0044 a0006c0011t0004g0020 a0007c0014t0002g0038 a0009c0008t0001g0017 a0010c0009t0001g0018 a0011c0007t0002g0037 a0012c0017t0008g0036	137	HG00140.hp1 HG00280.hp1 HG00544.hp1 others(134): Show HG00140.hp1 HG00280.hp1 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00741.hp2 HG01071.hp2 HG01099.hp1 HG01106.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01517.hp1 HG01934.hp1 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp2 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp2 HG02559.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp2 HG03834.hp2 HG04184.hp2 HG04199.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18941.hp2 NA18945.hp1 NA18962.hp1 NA18969.hp1 NA18971.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19064.hp1 NA19066.hp1 NA19068.hp1 NA19085.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20905.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.32-54C>T c.32-54C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120972940
chrX:120972998	A A	G G	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.32-112T>C c.32-112T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120972998
chrX:120973049	T T	TA TA	1	a0000c0015t0007g0033 a0000c0015t0007g0033	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.32-164_32-163ins others(1): Show c.32-164_32-163insT	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973049
chrX:120973067	A A	G G	1	a0001c0001t0002g0040 a0001c0001t0002g0040	1	HG02615.hp2 HG02615.hp2	intron_variant	MODIFIER	c.32-181T>C c.32-181T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973067
chrX:120973115	A A	AG AG	1	a0006c0011t0004g0020 a0006c0011t0004g0020	1	NA20300.hp2 NA20300.hp2	intron_variant	MODIFIER	c.32-230dupC c.32-230dupC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973115
chrX:120973179	GA GA	G G	1	a0006c0011t0004g0020 a0006c0011t0004g0020	1	NA20300.hp2 NA20300.hp2	intron_variant	MODIFIER	c.32-294delT c.32-294delT	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973179
chrX:120973254	T T	G G	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.32-368A>C c.32-368A>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973254
chrX:120973272	A A	G G	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.32-386T>C c.32-386T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973272
chrX:120973294	C C	A A	1	a0001c0001t0001g0008 a0001c0001t0001g0008	3	HG02004.hp1 HG03831.hp2 HG04184.hp1 HG02004.hp1 HG03831.hp2 HG04184.hp1	intron_variant	MODIFIER	c.32-408G>T c.32-408G>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973294
chrX:120973305	CG CG	C C	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	HG01099.hp1 HG02738.hp1 HG01099.hp1 HG02738.hp1	intron_variant	MODIFIER	c.32-420delC c.32-420delC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973305
chrX:120973317	G G	GC GC	1	a0000c0015t0007g0033 a0000c0015t0007g0033	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.32-432_32-431ins others(1): Show c.32-432_32-431insG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973317
chrX:120973335	C C	G G	2	a0001c0001t0002g0039 a0007c0014t0002g0038 a0001c0001t0002g0039 a0007c0014t0002g0038	2	HG02055.hp1 HG03516.hp1 HG02055.hp1 HG03516.hp1	intron_variant	MODIFIER	c.32-449G>C c.32-449G>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973335
chrX:120973335	C C	T T	1	a0001c0001t0001g0026 a0001c0001t0001g0026	1	HG00558.hp2 HG00558.hp2	intron_variant	MODIFIER	c.32-449G>A c.32-449G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973335
chrX:120973359	AAAATAAA others(1): Show AAAATAAAT	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.32-481_32-474del others(8): Show c.32-481_32-474delATTTATTT	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973359
chrX:120973409	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.32-523G>A c.32-523G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973409
chrX:120973419	T T	C C	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.32-533A>G c.32-533A>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973419
chrX:120973419	TG TG	T T	1	a0000c0015t0007g0033 a0000c0015t0007g0033	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.32-534delC c.32-534delC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973419
chrX:120973420	G G	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.32-534C>T c.32-534C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973420
chrX:120973467	CT CT	C C	1	a0000c0015t0007g0033 a0000c0015t0007g0033	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.31+557delA c.31+557delA	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973467
chrX:120973495	CA CA	C C	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.31+529delT c.31+529delT	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973495
chrX:120973500	T T	C C	1	a0001c0001t0001g0008 a0001c0001t0001g0008	3	HG02004.hp1 HG03831.hp2 HG04184.hp1 HG02004.hp1 HG03831.hp2 HG04184.hp1	intron_variant	MODIFIER	c.31+525A>G c.31+525A>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973500
chrX:120973521	A A	AG AG	1	a0000c0015t0007g0033 a0000c0015t0007g0033	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.31+503dupC c.31+503dupC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973521
chrX:120973529	A A	G G	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.31+496T>C c.31+496T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973529
chrX:120973530	T T	C C	12	a0000c0015t0007g0033 a0001c0001t0001g0003 a0001c0001t0001g0005 others(9): Show a0000c0015t0007g0033 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0031 a0001c0001t0002g0042 a0001c0001t0005g0032 a0001c0001t0006g0030 a0009c0008t0001g0017 a0010c0009t0001g0018	37	HG00544.hp2 HG00558.hp1 HG00597.hp1 others(34): Show HG00544.hp2 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG01099.hp1 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG02004.hp2 HG02056.hp1 HG02071.hp1 HG02257.hp2 HG02451.hp1 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG03139.hp1 HG03195.hp1 HG03239.hp2 HG03491.hp2 HG03704.hp2 HG06807.hp2 NA18941.hp2 NA18945.hp1 NA18971.hp1 NA18986.hp1 NA19002.hp1 NA19005.hp1 NA19006.hp1 NA19056.hp1 NA19064.hp1 NA19066.hp1 NA19068.hp1 NA19240.hp1 NA20300.hp1	intron_variant	MODIFIER	c.31+495A>G c.31+495A>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973530
chrX:120973535	C C	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.31+490G>T c.31+490G>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973535
chrX:120973571	A A	AT AT	1	a0000c0015t0007g0033 a0000c0015t0007g0033	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.31+453dupA c.31+453dupA	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973571
chrX:120973591	TA TA	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.31+433delT c.31+433delT	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973591
chrX:120973651	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.31+374G>A c.31+374G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973651
chrX:120973750	GC GC	G G	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.31+274delG c.31+274delG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973750
chrX:120973771	A A	G G	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	HG01517.hp2 HG01517.hp2	intron_variant	MODIFIER	c.31+254T>C c.31+254T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973771
chrX:120973813	A A	G G	9	a0000c0015t0007g0033 a0001c0001t0001g0003 a0001c0001t0001g0013 others(6): Show a0000c0015t0007g0033 a0001c0001t0001g0003 a0001c0001t0001g0013 a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0005g0032 a0001c0001t0006g0030 a0009c0008t0001g0017 a0010c0009t0001g0018	27	HG00544.hp2 HG00558.hp1 HG00597.hp1 others(24): Show HG00544.hp2 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG01975.hp1 HG01978.hp1 HG01993.hp1 HG02004.hp2 HG02056.hp1 HG02451.hp1 HG02622.hp1 HG02735.hp1 HG02818.hp2 HG03195.hp1 HG03491.hp2 NA18945.hp1 NA18971.hp1 NA18986.hp1 NA19002.hp1 NA19005.hp1 NA19006.hp1 NA19056.hp1 NA19064.hp1 NA19066.hp1 NA19068.hp1 NA19240.hp1 NA20300.hp1	intron_variant	MODIFIER	c.31+212T>C c.31+212T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973813
chrX:120973890	A A	T T	4	a0001c0001t0001g0025 a0001c0001t0002g0016 a0001c0001t0002g0043 others(1): Show a0001c0001t0001g0025 a0001c0001t0002g0016 a0001c0001t0002g0043 a0001c0006t0001g0014	6	HG00738.hp1 HG01928.hp1 HG01943.hp1 others(3): Show HG00738.hp1 HG01928.hp1 HG01943.hp1 HG02074.hp1 HG02145.hp1 HG02630.hp2	intron_variant	MODIFIER	c.31+135T>A c.31+135T>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973890
chrX:120973896	AT AT	A A	1	a0001c0001t0002g0043 a0001c0001t0002g0043	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.31+128delA c.31+128delA	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973896
chrX:120973998	G G	C C	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.31+27C>G c.31+27C>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	2/2	chrX	120973998
chrX:120974185	AG AG	A A	1	a0006c0011t0004g0020 a0006c0011t0004g0020	1	NA20300.hp2 NA20300.hp2	splice_region_variant&intron_variant	LOW	c.743-6delC c.743-6delC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974185
chrX:120974209	G G	C C	2	a0000c0015t0007g0033 a0001c0001t0001g0013 a0000c0015t0007g0033 a0001c0001t0001g0013	3	HG02818.hp2 HG03195.hp1 NA19240.hp1 HG02818.hp2 HG03195.hp1 NA19240.hp1	intron_variant	MODIFIER	c.743-29C>G c.743-29C>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974209
chrX:120974267	T T	TC TC	1	a0000c0015t0007g0033 a0000c0015t0007g0033	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.743-88dupG c.743-88dupG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974267
chrX:120974384	AG AG	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.743-205delC c.743-205delC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974384
chrX:120974452	TG TG	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.743-273delC c.743-273delC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974452
chrX:120974482	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.743-302G>A c.743-302G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974482
chrX:120974495	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.743-315G>A c.743-315G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974495
chrX:120974557	G G	A A	1	a0001c0012t0001g0021 a0001c0012t0001g0021	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.743-377C>T c.743-377C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974557
chrX:120974567	TTGG TTGG	T T	1	a0006c0011t0004g0020 a0006c0011t0004g0020	1	NA20300.hp2 NA20300.hp2	intron_variant	MODIFIER	c.743-390_743-388del others(3): Show c.743-390_743-388delCCA	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974567
chrX:120974577	AC AC	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.743-398delG c.743-398delG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974577
chrX:120974584	T T	C C	12	a0000c0015t0007g0033 a0001c0001t0001g0003 a0001c0001t0001g0005 others(9): Show a0000c0015t0007g0033 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0005g0032 a0001c0001t0006g0030 a0006c0011t0004g0020 a0009c0008t0001g0017 a0010c0009t0001g0018	36	HG00544.hp2 HG00558.hp1 HG00597.hp1 others(33): Show HG00544.hp2 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG01099.hp1 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG02004.hp2 HG02056.hp1 HG02071.hp1 HG02451.hp1 HG02622.hp1 HG02735.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG03195.hp1 HG03239.hp2 HG03491.hp2 HG03704.hp2 NA18941.hp2 NA18945.hp1 NA18971.hp1 NA18986.hp1 NA19002.hp1 NA19005.hp1 NA19006.hp1 NA19056.hp1 NA19064.hp1 NA19066.hp1 NA19068.hp1 NA19240.hp1 NA20300.hp1 NA20300.hp2	intron_variant	MODIFIER	c.743-404A>G c.743-404A>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974584
chrX:120974590	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.743-410G>A c.743-410G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974590
chrX:120974614	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.743-434G>A c.743-434G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974614
chrX:120974677	T T	C C	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+391A>G c.742+391A>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974677
chrX:120974682	G G	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+386C>T c.742+386C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974682
chrX:120974684	G G	C C	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+384C>G c.742+384C>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974684
chrX:120974685	A A	ACGCC ACGCC	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+382_742+383ins others(4): Show c.742+382_742+383insGGCG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974685
chrX:120974691	G G	C C	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+377C>G c.742+377C>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974691
chrX:120974709	TCCTTGGC others(5): Show TCCTTGGCGCATC	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+347_742+358del others(12): Show c.742+347_742+358delGATGCGCCAAGG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974709
chrX:120974713	T T	G G	1	a0001c0001t0001g0006 a0001c0001t0001g0006	4	HG02258.hp1 HG02280.hp2 HG02622.hp2 others(1): Show HG02258.hp1 HG02280.hp2 HG02622.hp2 HG03130.hp1	intron_variant	MODIFIER	c.742+355A>C c.742+355A>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974713
chrX:120974765	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+303G>A c.742+303G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974765
chrX:120974780	G G	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+288C>T c.742+288C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974780
chrX:120974786	A A	G G	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+282T>C c.742+282T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974786
chrX:120974796	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+272G>A c.742+272G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974796
chrX:120974839	C C	T T	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.742+229G>A c.742+229G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974839
chrX:120974841	A A	G G	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+227T>C c.742+227T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974841
chrX:120974860	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+208G>A c.742+208G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974860
chrX:120974868	G G	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+200C>T c.742+200C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974868
chrX:120974892	T T	C C	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+176A>G c.742+176A>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974892
chrX:120974893	TG TG	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+174delC c.742+174delC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974893
chrX:120974905	T T	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+163A>T c.742+163A>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974905
chrX:120974929	G G	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+139C>T c.742+139C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974929
chrX:120974932	T T	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+136A>T c.742+136A>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974932
chrX:120974934	C C	T T	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	HG01517.hp2 HG01517.hp2	intron_variant	MODIFIER	c.742+134G>A c.742+134G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974934
chrX:120974957	AC AC	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+110delG c.742+110delG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974957
chrX:120974970	A A	AC AC	1	a0006c0011t0004g0020 a0006c0011t0004g0020	1	NA20300.hp2 NA20300.hp2	intron_variant	MODIFIER	c.742+97dupG c.742+97dupG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974970
chrX:120974970	AC AC	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+97delG c.742+97delG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974970
chrX:120974986	A A	G G	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+82T>C c.742+82T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974986
chrX:120974997	G G	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+71C>T c.742+71C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974997
chrX:120974999	G G	A A	2	a0001c0012t0001g0021 a0012c0017t0008g0036 a0001c0012t0001g0021 a0012c0017t0008g0036	2	HG00140.hp1 NA19043.hp1 HG00140.hp1 NA19043.hp1	intron_variant	MODIFIER	c.742+69C>T c.742+69C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120974999
chrX:120975008	T T	C C	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+60A>G c.742+60A>G	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120975008
chrX:120975012	A A	G G	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+56T>C c.742+56T>C	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120975012
chrX:120975017	G G	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+51C>A c.742+51C>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120975017
chrX:120975025	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+43G>A c.742+43G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120975025
chrX:120975028	G G	A A	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+40C>T c.742+40C>T	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120975028
chrX:120975036	C C	T T	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+32G>A c.742+32G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120975036
chrX:120975037	T T	TC TC	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.742+30dupG c.742+30dupG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120975037
chrX:120975058	CGTT CGTT	C C	1	a0012c0017t0008g0036 a0012c0017t0008g0036	1	HG00140.hp1 HG00140.hp1	splice_region_variant&intron_variant	LOW	c.742+7_742+9delAAC c.742+7_742+9delAAC	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120975058
chrX:120975066	A A	AC AC	1	a0006c0011t0004g0020 a0006c0011t0004g0020	1	NA20300.hp2 NA20300.hp2	splice_donor_variant&intron_variant	HIGH	c.742+1dupG c.742+1dupG	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120975066
chrX:120975067	C C	T T	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	HG01517.hp2 HG01517.hp2	splice_donor_variant&intron_variant	HIGH	c.742+1G>A c.742+1G>A	CT47A3	ENSG00000236126.3	transcript	ENST00000441330.3	protein_coding	1/2	chrX	120975067

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JoGo Online Haplotype Explorer CT47A3_chrX_120967746_120981068

JoGo Local Haplotype Explorer (on iGV) CT47A3_chrX_120967746_120981068

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 13)

CCoding Level Haplotype Info (Total: 17)

TTranscript Level Haplotype Info (Total: 8)

GGenebody Level Haplotype Info (Total: 44)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 17)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 22)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 44)

Haplotype Details by Sample (Haploid Level) (Total: 201)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 64)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 17)

TTranscript Level Haplotype Variants (Exon) (Total: 18)

GGenebody Level Haplotype Variants (Intron) (Total: 87)

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Annotation (Repeats)

Annotation (SNP Array)