JoGo: Joint Open Genome and Omics Platform

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geneid	8653
ensemblid	ENSG00000067048.17
hgncid	2699
symbol	DDX3Y
name	DEAD-box helicase 3 Y-linked
refseq_nuc	NM_004660.5
refseq_prot	NP_004651.2
ensembl_nuc	ENST00000336079.8
ensembl_prot	ENSP00000336725.3
mane_status	MANE Select
chr	chrY
start	12904868
end	12920478
strand	+
ver	v1.2
region	chrY:12904868-12920478
region5000	chrY:12899868-12925478
regionname0	DDX3Y_chrY_12904868_12920478
regionname5000	DDX3Y_chrY_12899868_12925478

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	660	133	18	20	72	5	16	57	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	1983	132	18	19	72	5	16	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478
c0002	0/0	1983	1	0	1	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	2426	124	18	20	70	5	9	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478
t0002	0/0	2426	7	0	0	0	0	7	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478
t0003	0/0	2426	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478
t0004	0/0	2423	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/1	58	0	6	49	1	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0002	1/0	10	0	7	0	2	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0003	0/0	7	0	0	0	0	7	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0004	0/0	7	7	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0005	0/0	4	0	2	1	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0006	0/0	3	0	3	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0007	0/0	3	0	0	3	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0008	0/0	3	0	0	3	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0009	0/0	3	0	0	3	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0010	0/0	3	3	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0011	0/0	3	0	0	3	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0012	0/0	2	2	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0013	0/0	2	0	0	1	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0014	0/0	2	1	1	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0015	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0016	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0017	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0018	0/0	1	1	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0019	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0020	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0021	0/0	1	0	1	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0022	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0023	0/0	1	0	0	0	1	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0024	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0025	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0026	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0027	0/0	1	0	0	0	1	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0028	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0029	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0030	0/0	1	1	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0031	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0032	0/0	1	1	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0033	0/0	1	1	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0034	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0035	0/0	1	1	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0036	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
g0037	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	1983	132	18	19	72	5	16	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478
a0001c0002	0/0	1983	1	0	1	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	4408	123	18	19	70	5	9	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478
a0001c0001t0002	0/0	4408	7	0	0	0	0	7	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478
a0001c0001t0003	0/0	4408	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478
a0001c0001t0004	0/0	4405	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478
a0001c0002t0001	0/0	4408	1	0	1	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	copy fasta	chrY	12899868	12925478

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/1	57	0	5	49	1	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0002	1/0	10	0	7	0	2	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0004	0/0	7	7	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0005	0/0	3	0	2	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0006	0/0	3	0	3	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0007	0/0	3	0	0	3	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0008	0/0	3	0	0	3	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0009	0/0	3	0	0	3	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0010	0/0	3	3	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0011	0/0	3	0	0	3	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0012	0/0	2	2	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0013	0/0	2	0	0	1	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0014	0/0	2	1	1	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0015	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0016	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0017	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0018	0/0	1	1	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0020	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0021	0/0	1	0	1	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0022	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0023	0/0	1	0	0	0	1	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0024	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0026	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0027	0/0	1	0	0	0	1	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0028	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0029	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0030	0/0	1	1	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0032	0/0	1	1	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0033	0/0	1	1	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0034	0/0	1	0	0	0	0	1	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0035	0/0	1	1	0	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0036	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0001g0037	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0002g0003	0/0	7	0	0	0	0	7	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0003g0005	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0001t0004g0031	0/0	1	0	0	1	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
a0001c0002t0001g0001	0/0	1	0	1	0	0	0	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0027	EUR	GBR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG00642	hp1	a0001	c0001	t0001	g0002	AMR	PUR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG00738	hp1	a0001	c0001	t0001	g0002	AMR	PUR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01074	hp1	a0001	c0001	t0001	g0006	AMR	PUR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01099	hp1	a0001	c0001	t0001	g0014	AMR	PUR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01106	hp1	a0001	c0001	t0001	g0006	AMR	PUR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01109	hp1	a0001	c0001	t0001	g0006	AMR	PUR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01167	hp1	a0001	c0001	t0001	g0021	AMR	PUR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01192	hp1	a0001	c0002	t0001	g0001	AMR	PUR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01243	hp1	a0001	c0001	t0001	g0002	AMR	PUR	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01261	hp1	a0001	c0001	t0001	g0002	AMR	CLM	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01358	hp1	a0001	c0001	t0001	g0002	AMR	CLM	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01515	hp1	a0001	c0001	t0001	g0002	EUR	IBS	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01928	hp1	a0001	c0001	t0001	g0005	AMR	PEL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01934	hp1	a0001	c0001	t0001	g0002	AMR	PEL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01943	hp1	a0001	c0001	t0001	g0002	AMR	PEL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG01952	hp1	a0001	c0001	t0001	g0005	AMR	PEL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02015	hp1	a0001	c0001	t0001	g0008	EAS	KHV	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02040	hp1	a0001	c0001	t0001	g0025	EAS	KHV	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02055	hp1	a0001	c0001	t0001	g0032	AFR	ACB	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02074	hp1	a0001	c0001	t0001	g0029	EAS	KHV	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02083	hp1	a0001	c0001	t0001	g0009	EAS	KHV	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02132	hp1	a0001	c0001	t0003	g0005	EAS	KHV	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02135	hp1	a0001	c0001	t0001	g0008	EAS	KHV	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02145	hp1	a0001	c0001	t0001	g0033	AFR	ACB	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02258	hp1	a0001	c0001	t0001	g0004	AFR	ACB	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02572	hp1	a0001	c0001	t0001	g0012	AFR	GWD	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02602	hp1	a0001	c0001	t0002	g0003	SAS	PJL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02647	hp1	a0001	c0001	t0001	g0030	AFR	GWD	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02698	hp1	a0001	c0001	t0001	g0034	SAS	PJL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02717	hp1	a0001	c0001	t0001	g0004	AFR	GWD	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02735	hp1	a0001	c0001	t0001	g0017	SAS	PJL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02738	hp1	a0001	c0001	t0002	g0003	SAS	PJL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02895	hp1	a0001	c0001	t0001	g0004	AFR	GWD	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02965	hp1	a0001	c0001	t0001	g0010	AFR	ESN	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03017	hp1	a0001	c0001	t0001	g0013	SAS	PJL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03098	hp1	a0001	c0001	t0001	g0012	AFR	MSL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03130	hp1	a0001	c0001	t0001	g0004	AFR	ESN	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03139	hp1	a0001	c0001	t0001	g0010	AFR	ESN	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03209	hp1	a0001	c0001	t0001	g0004	AFR	MSL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03225	hp1	a0001	c0001	t0001	g0035	AFR	MSL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03490	hp1	a0001	c0001	t0002	g0003	SAS	PJL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03492	hp1	a0001	c0001	t0002	g0003	SAS	PJL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03579	hp1	a0001	c0001	t0001	g0014	AFR	MSL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03654	hp1	a0001	c0001	t0001	g0005	SAS	PJL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03688	hp1	a0001	c0001	t0001	g0020	SAS	STU	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03710	hp1	a0001	c0001	t0001	g0015	SAS	PJL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03942	hp1	a0001	c0001	t0001	g0026	SAS	BEB	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG04115	hp1	a0001	c0001	t0002	g0003	SAS	STU	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG04204	hp1	a0001	c0001	t0002	g0003	SAS	STU	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG04228	hp1	a0001	c0001	t0002	g0003	SAS	STU	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18522	hp1	a0001	c0001	t0001	g0004	AFR	YRI	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18612	hp1	a0001	c0001	t0001	g0007	EAS	CHB	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18948	hp1	a0001	c0001	t0001	g0022	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18965	hp1	a0001	c0001	t0001	g0008	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18966	hp1	a0001	c0001	t0001	g0024	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18971	hp1	a0001	c0001	t0001	g0011	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18974	hp1	a0001	c0001	t0001	g0037	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18985	hp1	a0001	c0001	t0001	g0019	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18988	hp1	a0001	c0001	t0001	g0028	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18989	hp1	a0001	c0001	t0001	g0011	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19004	hp1	a0001	c0001	t0001	g0036	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19006	hp1	a0001	c0001	t0001	g0011	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19009	hp1	a0001	c0001	t0001	g0009	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19043	hp1	a0001	c0001	t0001	g0018	AFR	LWK	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19055	hp1	a0001	c0001	t0001	g0009	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19072	hp1	a0001	c0001	t0001	g0013	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19079	hp1	a0001	c0001	t0001	g0007	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19089	hp1	a0001	c0001	t0004	g0031	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA19091	hp1	a0001	c0001	t0001	g0007	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA20752	hp1	a0001	c0001	t0001	g0002	EUR	TSI	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA20805	hp1	a0001	c0001	t0001	g0023	EUR	TSI	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA20905	hp1	a0001	c0001	t0001	g0016	SAS	GIH	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG02486	hp1	a0001	c0001	t0001	g0010	AFR	ACB	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
HG03471	hp1	a0001	c0001	t0001	g0004	AFR	MSL	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0002	REF	REF	DDX3Y_chrY_12899868_12925478	DDX3Y	chrY	12899868	12925478

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:12915156	C C	T T	1	a0001c0002 a0001c0002	1	HG01192.hp1 HG01192.hp1	synonymous_variant	LOW	c.948C>T c.948C>T	p.His316His p.His316His	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	10/17	1017/4408	948/1983	316/660			chrY	12915156

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrY:12918738	C C	A A	1	a0001c0001t0003 a0001c0001t0003	1	HG02132.hp1 HG02132.hp1	3_prime_UTR_variant	MODIFIER	c.616C>A c.616C>A	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	17/17	616		chrY	12918738
chrY:12918840	C C	T T	1	a0001c0001t0002 a0001c0001t0002	7	HG02602.hp1 HG02738.hp1 HG03490.hp1 others(4): Show HG02602.hp1 HG02738.hp1 HG03490.hp1 HG03492.hp1 HG04115.hp1 HG04204.hp1 HG04228.hp1	3_prime_UTR_variant	MODIFIER	c.718C>T c.718C>T	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	17/17	718		chrY	12918840
chrY:12919437	TA TA	T T	1	a0001c0001t0004 a0001c0001t0004	1	NA19089.hp1 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.1320delA c.1320delA	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	17/17	1320	INFO_REALIGN_3_PRIME	chrY	12919437
chrY:12919448	CT CT	C C	1	a0001c0001t0004 a0001c0001t0004	1	NA19089.hp1 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.1330delT c.1330delT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	17/17	1330	INFO_REALIGN_3_PRIME	chrY	12919448
chrY:12919456	TG TG	T T	1	a0001c0001t0004 a0001c0001t0004	1	NA19089.hp1 NA19089.hp1	3_prime_UTR_variant	MODIFIER	c.1336delG c.1336delG	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	17/17	1336	INFO_REALIGN_3_PRIME	chrY	12919456

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrY:12905406	G G	A A	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	HG03710.hp1 HG03710.hp1	intron_variant	MODIFIER	c.45+425G>A c.45+425G>A	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	1/16		chrY	12905406
chrY:12905594	C C	T T	2	a0001c0001t0001g0011 a0001c0001t0001g0037 a0001c0001t0001g0011 a0001c0001t0001g0037	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.45+613C>T c.45+613C>T	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	1/16		chrY	12905594
chrY:12906333	A A	C C	1	a0001c0001t0001g0036 a0001c0001t0001g0036	1	NA19004.hp1 NA19004.hp1	intron_variant	MODIFIER	c.46-1204A>C c.46-1204A>C	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	1/16		chrY	12906333
chrY:12906404	A A	G G	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.46-1133A>G c.46-1133A>G	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	1/16		chrY	12906404
chrY:12906548	G G	A A	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.46-989G>A c.46-989G>A	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	1/16		chrY	12906548
chrY:12906671	C C	T T	3	a0001c0001t0001g0005 a0001c0001t0001g0034 a0001c0001t0003g0005 a0001c0001t0001g0005 a0001c0001t0001g0034 a0001c0001t0003g0005	5	HG01928.hp1 HG01952.hp1 HG02132.hp1 others(2): Show HG01928.hp1 HG01952.hp1 HG02132.hp1 HG02698.hp1 HG03654.hp1	intron_variant	MODIFIER	c.46-866C>T c.46-866C>T	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	1/16		chrY	12906671
chrY:12907028	G G	GT GT	4	a0001c0001t0001g0004 a0001c0001t0001g0010 a0001c0001t0001g0032 others(1): Show a0001c0001t0001g0004 a0001c0001t0001g0010 a0001c0001t0001g0032 a0001c0001t0001g0033	12	HG02055.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.46-494dupT c.46-494dupT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	1/16	INFO_REALIGN_3_PRIME	chrY	12907028
chrY:12907028	GT GT	G G	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.46-494delT c.46-494delT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	1/16	INFO_REALIGN_3_PRIME	chrY	12907028
chrY:12907181	T T	C C	1	a0001c0001t0001g0006 a0001c0001t0001g0006	3	HG01074.hp1 HG01106.hp1 HG01109.hp1 HG01074.hp1 HG01106.hp1 HG01109.hp1	intron_variant	MODIFIER	c.46-356T>C c.46-356T>C	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	1/16		chrY	12907181
chrY:12907702	T T	G G	1	a0001c0001t0001g0010 a0001c0001t0001g0010	3	HG02486.hp1 HG02965.hp1 HG03139.hp1 HG02486.hp1 HG02965.hp1 HG03139.hp1	intron_variant	MODIFIER	c.103+108T>G c.103+108T>G	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	2/16		chrY	12907702
chrY:12908667	T T	C C	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.104-693T>C c.104-693T>C	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	2/16		chrY	12908667
chrY:12908693	C C	CT CT	1	a0001c0001t0004g0031 a0001c0001t0004g0031	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.104-660dupT c.104-660dupT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	2/16	INFO_REALIGN_3_PRIME	chrY	12908693
chrY:12909193	A A	G G	2	a0001c0001t0001g0018 a0001c0001t0001g0035 a0001c0001t0001g0018 a0001c0001t0001g0035	2	HG03225.hp1 NA19043.hp1 HG03225.hp1 NA19043.hp1	intron_variant	MODIFIER	c.104-167A>G c.104-167A>G	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	2/16		chrY	12909193
chrY:12909219	C C	T T	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.104-141C>T c.104-141C>T	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	2/16		chrY	12909219
chrY:12909458	G G	C C	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.151+51G>C c.151+51G>C	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16		chrY	12909458
chrY:12909605	A A	G G	2	a0001c0001t0001g0009 a0001c0001t0001g0029 a0001c0001t0001g0009 a0001c0001t0001g0029	4	HG02074.hp1 HG02083.hp1 NA19009.hp1 others(1): Show HG02074.hp1 HG02083.hp1 NA19009.hp1 NA19055.hp1	intron_variant	MODIFIER	c.151+198A>G c.151+198A>G	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16		chrY	12909605
chrY:12909611	G G	A A	6	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0010 others(3): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0032 a0001c0001t0001g0033	17	HG01074.hp1 HG01106.hp1 HG01109.hp1 others(14): Show HG01074.hp1 HG01106.hp1 HG01109.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.151+204G>A c.151+204G>A	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16		chrY	12909611
chrY:12909774	G G	GT GT	3	a0001c0001t0001g0008 a0001c0001t0001g0028 a0001c0001t0001g0033 a0001c0001t0001g0008 a0001c0001t0001g0028 a0001c0001t0001g0033	5	HG02015.hp1 HG02135.hp1 HG02145.hp1 others(2): Show HG02015.hp1 HG02135.hp1 HG02145.hp1 NA18965.hp1 NA18988.hp1	intron_variant	MODIFIER	c.151+380dupT c.151+380dupT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16	INFO_REALIGN_3_PRIME	chrY	12909774
chrY:12910459	A A	G G	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.151+1052A>G c.151+1052A>G	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16		chrY	12910459
chrY:12910478	AT AT	A A	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.151+1081delT c.151+1081delT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16	INFO_REALIGN_3_PRIME	chrY	12910478
chrY:12910554	T T	G G	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.151+1147T>G c.151+1147T>G	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16		chrY	12910554
chrY:12910796	C C	T T	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.152-1043C>T c.152-1043C>T	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16		chrY	12910796
chrY:12910913	G G	GT GT	6	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0026 others(3): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0032	7	HG01099.hp1 HG02055.hp1 HG02074.hp1 others(4): Show HG01099.hp1 HG02055.hp1 HG02074.hp1 HG03579.hp1 HG03710.hp1 HG03942.hp1 NA18988.hp1	intron_variant	MODIFIER	c.152-911dupT c.152-911dupT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16	INFO_REALIGN_3_PRIME	chrY	12910913
chrY:12910970	G G	A A	1	a0001c0001t0001g0034 a0001c0001t0001g0034	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.152-869G>A c.152-869G>A	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16		chrY	12910970
chrY:12911027	C C	T T	1	a0001c0001t0001g0007 a0001c0001t0001g0007	3	NA18612.hp1 NA19079.hp1 NA19091.hp1 NA18612.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.152-812C>T c.152-812C>T	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16		chrY	12911027
chrY:12911104	G G	A A	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.152-735G>A c.152-735G>A	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16		chrY	12911104
chrY:12911166	G G	GC GC	1	a0001c0001t0001g0007 a0001c0001t0001g0007	3	NA18612.hp1 NA19079.hp1 NA19091.hp1 NA18612.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.152-671dupC c.152-671dupC	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16	INFO_REALIGN_3_PRIME	chrY	12911166
chrY:12911452	T T	C C	2	a0001c0001t0001g0021 a0001c0001t0001g0027 a0001c0001t0001g0021 a0001c0001t0001g0027	2	HG00140.hp1 HG01167.hp1 HG00140.hp1 HG01167.hp1	intron_variant	MODIFIER	c.152-387T>C c.152-387T>C	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	3/16		chrY	12911452
chrY:12913710	C C	T T	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	HG02040.hp1 HG02040.hp1	splice_region_variant&intron_variant	LOW	c.538-8C>T c.538-8C>T	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	6/16		chrY	12913710
chrY:12914503	AT AT	A A	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.674-58delT c.674-58delT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	7/16	INFO_REALIGN_3_PRIME	chrY	12914503
chrY:12914512	C C	A A	37	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0005 others(34): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0003g0005 a0001c0001t0004g0031 a0001c0002t0001g0001	116	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(113): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG01928.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.674-52C>A c.674-52C>A	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	7/16		chrY	12914512
chrY:12914721	C C	T T	1	a0001c0001t0001g0006 a0001c0001t0001g0006	3	HG01074.hp1 HG01106.hp1 HG01109.hp1 HG01074.hp1 HG01106.hp1 HG01109.hp1	intron_variant	MODIFIER	c.759+72C>T c.759+72C>T	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	8/16		chrY	12914721
chrY:12914746	A A	AT AT	1	a0001c0001t0002g0003 a0001c0001t0002g0003	7	HG02602.hp1 HG02738.hp1 HG03490.hp1 others(4): Show HG02602.hp1 HG02738.hp1 HG03490.hp1 HG03492.hp1 HG04115.hp1 HG04204.hp1 HG04228.hp1	intron_variant	MODIFIER	c.759+110dupT c.759+110dupT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	8/16	INFO_REALIGN_3_PRIME	chrY	12914746
chrY:12914746	AT AT	A A	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	NA18948.hp1 NA18948.hp1	intron_variant	MODIFIER	c.759+110delT c.759+110delT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	8/16	INFO_REALIGN_3_PRIME	chrY	12914746
chrY:12915617	G G	T T	2	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0014 a0001c0001t0001g0015	3	HG01099.hp1 HG03579.hp1 HG03710.hp1 HG01099.hp1 HG03579.hp1 HG03710.hp1	intron_variant	MODIFIER	c.1020-13G>T c.1020-13G>T	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	10/16		chrY	12915617
chrY:12916470	CAT CAT	C C	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.1491+29_1491+30del others(2): Show c.1491+29_1491+30delAT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	13/16		chrY	12916470
chrY:12916498	A A	C C	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1492-19A>C c.1492-19A>C	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	13/16		chrY	12916498
chrY:12917246	C C	G G	2	a0001c0001t0001g0024 a0001c0001t0004g0031 a0001c0001t0001g0024 a0001c0001t0004g0031	2	NA18966.hp1 NA19089.hp1 NA18966.hp1 NA19089.hp1	intron_variant	MODIFIER	c.1764-157C>G c.1764-157C>G	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	15/16		chrY	12917246
chrY:12917583	C C	CT CT	4	a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0023 others(1): Show a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0023 a0001c0001t0001g0030	4	HG02647.hp1 HG02735.hp1 NA20805.hp1 others(1): Show HG02647.hp1 HG02735.hp1 NA20805.hp1 NA20905.hp1	intron_variant	MODIFIER	c.1903+57dupT c.1903+57dupT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	16/16	INFO_REALIGN_3_PRIME	chrY	12917583
chrY:12917583	CT CT	C C	2	a0001c0001t0001g0013 a0001c0001t0004g0031 a0001c0001t0001g0013 a0001c0001t0004g0031	3	HG03017.hp1 NA19072.hp1 NA19089.hp1 HG03017.hp1 NA19072.hp1 NA19089.hp1	intron_variant	MODIFIER	c.1903+57delT c.1903+57delT	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	16/16	INFO_REALIGN_3_PRIME	chrY	12917583
chrY:12917835	T T	G G	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	NA19043.hp1 NA19043.hp1	intron_variant	MODIFIER	c.1904-208T>G c.1904-208T>G	DDX3Y	ENSG00000067048.17	transcript	ENST00000336079.8	protein_coding	16/16		chrY	12917835

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🧬 JoGo Online Haplotype Explorer DDX3Y_chrY_12899868_12925478

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 1)

CCoding Level Haplotype Info (Total: 2)

TTranscript Level Haplotype Info (Total: 4)

GGenebody Level Haplotype Info (Total: 37)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 2)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 5)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 39)

Haplotype Details by Sample (Haploid Level) (Total: 133)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 0)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 5)

GGenebody Level Haplotype Variants (Intron) (Total: 41)

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Annotation (Repeats)

Annotation (SNP Array)