Joint Open Genome and Omics Platform (JoGo)

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geneid	4102
ensemblid	ENSG00000221867.9
hgncid	6801
symbol	MAGEA3
name	MAGE family member A3
refseq_nuc	NM_005362.4
refseq_prot	NP_005353.1
ensembl_nuc	ENST00000370278.4
ensembl_prot	ENSP00000359301.3
mane_status	MANE Select
chr	chrX
start	152698794
end	152702347
strand	+
ver	v1.2
region	chrX:152698794-152702347
region5000	chrX:152693794-152707347
regionname0	MAGEA3_chrX_152698794_152702347
regionname5000	MAGEA3_chrX_152693794_152707347

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	314	160	30	32	69	11	16	56	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0002	0/0	314	27	2	1	20	2	2	19	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0003	0/0	314	2	2	0	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0004	0/0	314	2	2	0	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0005	0/0	314	1	1	0	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	945	154	26	32	68	11	15	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
c0002	0/0	945	27	2	1	20	2	2	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
c0003	0/0	945	3	3	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
c0004	0/0	945	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
c0005	0/0	945	2	1	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
c0006	0/0	945	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
c0007	0/0	945	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
c0008	0/0	945	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	738	134	24	28	55	10	15	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0002	0/0	738	23	2	1	16	2	2	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0003	0/0	738	12	0	4	7	1	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0004	0/0	738	5	5	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0005	0/0	738	3	0	0	3	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0006	0/0	738	2	0	0	2	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0007	0/0	738	2	0	0	2	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0008	0/0	738	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0009	0/0	738	2	0	0	2	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0010	0/0	738	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0011	0/0	738	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0012	0/0	738	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0013	0/0	738	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0014	0/0	693	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
t0015	0/0	738	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	98	13	26	42	7	8	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0002	0/0	60	4	2	43	4	7	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0003	0/0	6	6	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0004	0/0	3	3	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0005	0/0	3	3	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0006	0/0	3	0	3	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0007	0/0	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0008	0/0	2	1	1	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0009	0/0	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0010	0/0	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0011	0/0	1	0	0	0	1	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0012	0/0	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0013	0/0	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0014	0/0	1	0	1	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0015	0/0	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0016	0/0	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0017	0/0	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0018	0/0	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0019	0/0	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0020	0/0	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0021	0/0	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
g0022	0/0	1	0	0	0	1	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	945	154	26	32	68	11	15	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0003	0/0	945	3	3	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0005	0/0	945	2	1	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0007	0/0	945	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0002c0002	0/0	945	27	2	1	20	2	2	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0003c0006	0/0	945	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0004c0004	0/0	945	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0005c0008	0/0	945	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	1682	128	20	28	54	10	14	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0001t0003	0/0	1682	12	0	4	7	1	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0001t0004	0/0	1682	5	5	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0001t0005	0/0	1682	3	0	0	3	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0001t0009	0/0	1682	2	0	0	2	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0001t0011	0/0	1682	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0001t0012	0/0	1682	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0001t0014	0/0	1637	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0001t0015	0/0	1682	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0003t0001	0/0	1682	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0003t0013	0/0	1682	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0005t0001	0/0	1682	2	1	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0001c0007t0001	0/0	1682	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0002c0002t0002	0/0	1682	23	2	1	16	2	2	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0002c0002t0006	0/0	1682	2	0	0	2	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0002c0002t0007	0/0	1682	2	0	0	2	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0003c0006t0010	0/0	1682	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0004c0004t0008	0/0	1682	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347
a0005c0008t0001	0/0	1682	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	copy fasta	chrX	152693794	152707347

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/1	79	10	22	31	6	8	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0001g0002	0/0	33	3	1	22	2	5	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0001g0003	0/0	3	3	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0001g0004	0/0	3	3	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0001g0006	0/0	3	0	3	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0001g0008	0/0	2	1	1	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0001g0010	0/0	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0001g0011	0/0	1	0	0	0	1	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0001g0014	0/0	1	0	1	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0001g0017	0/0	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0001g0022	0/0	1	0	0	0	1	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0003g0001	0/0	12	0	4	7	1	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0004g0005	0/0	3	3	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0004g0012	0/0	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0004g0016	0/0	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0005g0002	0/0	2	0	0	2	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0005g0020	0/0	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0009g0001	0/0	2	0	0	2	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0011g0001	0/0	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0012g0002	0/0	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0014g0001	0/0	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0001t0015g0018	0/0	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0003t0001g0003	0/0	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0003t0013g0003	0/0	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0005t0001g0001	0/0	2	1	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0001c0007t0001g0002	0/0	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0002c0002t0002g0002	0/0	19	1	1	14	2	1	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0002c0002t0002g0013	0/0	1	0	0	0	0	1	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0002c0002t0002g0015	0/0	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0002c0002t0002g0019	0/0	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0002c0002t0002g0021	0/0	1	0	0	1	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0002c0002t0006g0002	0/0	2	0	0	2	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0002c0002t0007g0002	0/0	2	0	0	2	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0003c0006t0010g0009	0/0	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0004c0004t0008g0007	0/0	2	2	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
a0005c0008t0001g0001	0/0	1	1	0	0	0	0	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0011	EUR	GBR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG00140	hp1	a0001	c0001	t0001	g0002	EUR	GBR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG00280	hp1	a0001	c0001	t0003	g0001	EUR	FIN	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG00323	hp1	a0002	c0002	t0002	g0002	EUR	FIN	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG00323	hp2	a0001	c0001	t0001	g0002	EUR	FIN	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG00642	hp1	a0001	c0001	t0001	g0002	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG00735	hp1	a0001	c0001	t0001	g0014	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01070	hp1	a0002	c0002	t0002	g0002	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01070	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01074	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01167	hp1	a0001	c0001	t0001	g0006	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01168	hp1	a0001	c0001	t0003	g0001	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01168	hp2	a0001	c0001	t0001	g0006	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01175	hp1	a0001	c0001	t0001	g0006	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01256	hp1	a0001	c0001	t0003	g0001	AMR	CLM	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01261	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01358	hp1	a0001	c0001	t0003	g0001	AMR	CLM	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01516	hp2	a0002	c0002	t0002	g0002	EUR	IBS	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01884	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01884	hp2	a0003	c0006	t0010	g0009	AFR	ACB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01891	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01891	hp2	a0001	c0005	t0001	g0001	AFR	ACB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01934	hp1	a0001	c0001	t0001	g0008	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02004	hp1	a0001	c0001	t0003	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02004	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02015	hp1	a0001	c0001	t0001	g0002	EAS	KHV	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02071	hp2	a0001	c0001	t0014	g0001	EAS	KHV	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02083	hp1	a0002	c0002	t0002	g0002	EAS	KHV	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02135	hp1	a0001	c0001	t0001	g0002	EAS	KHV	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02145	hp2	a0005	c0008	t0001	g0001	AFR	ACB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02155	hp1	a0001	c0001	t0001	g0002	EAS	CDX	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02155	hp2	a0001	c0001	t0001	g0002	EAS	CDX	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02273	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02280	hp1	a0004	c0004	t0008	g0007	AFR	ACB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02280	hp2	a0001	c0001	t0001	g0004	AFR	ACB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02523	hp2	a0001	c0001	t0003	g0001	EAS	KHV	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02647	hp1	a0001	c0001	t0001	g0003	AFR	GWD	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02723	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02723	hp2	a0001	c0001	t0001	g0002	AFR	GWD	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02738	hp1	a0001	c0001	t0001	g0002	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02809	hp1	a0001	c0001	t0004	g0012	AFR	GWD	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02809	hp2	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02818	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02818	hp2	a0001	c0001	t0004	g0005	AFR	GWD	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02922	hp1	a0001	c0001	t0004	g0005	AFR	ESN	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG02965	hp1	a0002	c0002	t0002	g0019	AFR	ESN	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03098	hp1	a0001	c0001	t0001	g0003	AFR	MSL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03195	hp1	a0001	c0003	t0001	g0003	AFR	ESN	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03195	hp2	a0001	c0001	t0001	g0004	AFR	ESN	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03225	hp1	a0001	c0001	t0001	g0002	AFR	MSL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03239	hp1	a0001	c0007	t0001	g0002	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03239	hp2	a0001	c0001	t0001	g0017	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03486	hp1	a0001	c0001	t0001	g0002	AFR	MSL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03486	hp2	a0001	c0001	t0001	g0003	AFR	MSL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03490	hp1	a0001	c0001	t0001	g0002	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03491	hp1	a0002	c0002	t0002	g0013	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03654	hp1	a0001	c0001	t0001	g0002	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03669	hp1	a0002	c0002	t0002	g0002	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03669	hp2	a0001	c0001	t0001	g0002	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03704	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03704	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03927	hp1	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG04184	hp2	a0001	c0001	t0001	g0002	SAS	BEB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG04199	hp1	a0001	c0001	t0015	g0018	SAS	STU	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18906	hp1	a0002	c0002	t0002	g0002	AFR	YRI	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18906	hp2	a0001	c0001	t0004	g0005	AFR	YRI	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18939	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18940	hp1	a0001	c0001	t0009	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18942	hp2	a0001	c0001	t0003	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18944	hp1	a0001	c0001	t0003	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18945	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18950	hp2	a0001	c0001	t0003	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18951	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18951	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18953	hp1	a0001	c0005	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18957	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18957	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18959	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18963	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18963	hp2	a0001	c0001	t0005	g0020	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18968	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18969	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18969	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18971	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18974	hp1	a0002	c0002	t0002	g0021	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18979	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18979	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18980	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18980	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18984	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18985	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18986	hp1	a0001	c0001	t0003	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18991	hp1	a0002	c0002	t0006	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18991	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18993	hp1	a0002	c0002	t0007	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18993	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18994	hp1	a0001	c0001	t0009	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19002	hp1	a0002	c0002	t0007	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19004	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19010	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19010	hp2	a0001	c0001	t0012	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19011	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19011	hp2	a0001	c0001	t0005	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19030	hp1	a0001	c0003	t0001	g0003	AFR	LWK	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19030	hp2	a0004	c0004	t0008	g0007	AFR	LWK	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19043	hp1	a0001	c0001	t0001	g0001	AFR	LWK	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19055	hp1	a0001	c0001	t0003	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19056	hp1	a0001	c0001	t0003	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19062	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19064	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19064	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19066	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19067	hp1	a0001	c0001	t0005	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19068	hp1	a0002	c0002	t0006	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19072	hp1	a0002	c0002	t0002	g0015	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19074	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19074	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19076	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19077	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19077	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19078	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19078	hp2	a0001	c0001	t0001	g0010	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19082	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19086	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19087	hp2	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19090	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19240	hp1	a0003	c0006	t0010	g0009	AFR	YRI	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA19240	hp2	a0001	c0003	t0013	g0003	AFR	YRI	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA20129	hp1	a0001	c0001	t0011	g0001	AFR	ASW	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA20129	hp2	a0001	c0001	t0001	g0008	AFR	ASW	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA20752	hp1	a0001	c0001	t0001	g0022	EUR	TSI	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG06807	hp1	a0001	c0001	t0001	g0004	AFR	USA	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
HG06807	hp2	a0001	c0001	t0004	g0016	AFR	USA	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
NA18955	hp1	a0001	c0001	t0001	g0002	EAS	JPT	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	MAGEA3_chrX_152693794_152707347	MAGEA3	chrX	152693794	152707347

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:152701010	G G	C C	1	a0004 a0004	2	HG02280.hp1 NA19030.hp2 HG02280.hp1 NA19030.hp2	missense_variant	MODERATE	c.178G>C c.178G>C	p.Asp60His p.Asp60His	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	345/1682	178/945	60/314	chrX	152701010
chrX:152701175	G G	A A	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.343G>A c.343G>A	p.Glu115Lys p.Glu115Lys	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	510/1682	343/945	115/314	chrX	152701175
chrX:152701287	G G	T T	1	a0003 a0003	2	HG01884.hp2 NA19240.hp1 HG01884.hp2 NA19240.hp1	missense_variant	MODERATE	c.455G>T c.455G>T	p.Ser152Ile p.Ser152Ile	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	622/1682	455/945	152/314	chrX	152701287
chrX:152701298	A A	G G	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.466A>G c.466A>G	p.Ser156Gly p.Ser156Gly	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	633/1682	466/945	156/314	chrX	152701298
chrX:152701299	G G	A A	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.467G>A c.467G>A	p.Ser156Asn p.Ser156Asn	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	634/1682	467/945	156/314	chrX	152701299
chrX:152701355	T T	G G	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.523T>G c.523T>G	p.Leu175Val p.Leu175Val	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	690/1682	523/945	175/314	chrX	152701355
chrX:152701427	G G	A A	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.595G>A c.595G>A	p.Ala199Thr p.Ala199Thr	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	762/1682	595/945	199/314	chrX	152701427
chrX:152701433	C C	T T	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.601C>T c.601C>T	p.Leu201Phe p.Leu201Phe	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	768/1682	601/945	201/314	chrX	152701433
chrX:152701445	G G	A A	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.613G>A c.613G>A	p.Val205Ile p.Val205Ile	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	780/1682	613/945	205/314	chrX	152701445
chrX:152701464	G G	A A	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.632G>A c.632G>A	p.Arg211Lys p.Arg211Lys	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	799/1682	632/945	211/314	chrX	152701464
chrX:152701549	G G	C C	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.717G>C c.717G>C	p.Leu239Phe p.Leu239Phe	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	884/1682	717/945	239/314	chrX	152701549
chrX:152701577	C C	T T	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.745C>T c.745C>T	p.His249Tyr p.His249Tyr	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	912/1682	745/945	249/314	chrX	152701577
chrX:152701664	C C	A A	1	a0005 a0005	1	HG02145.hp2 HG02145.hp2	missense_variant	MODERATE	c.832C>A c.832C>A	p.Leu278Ile p.Leu278Ile	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	999/1682	832/945	278/314	chrX	152701664
chrX:152701667	G G	A A	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.835G>A c.835G>A	p.Val279Ile p.Val279Ile	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	1002/1682	835/945	279/314	chrX	152701667
chrX:152701725	A A	G G	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.893A>G c.893A>G	p.His298Arg p.His298Arg	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	1060/1682	893/945	298/314	chrX	152701725
chrX:152701740	C C	T T	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.908C>T c.908C>T	p.Pro303Leu p.Pro303Leu	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	1075/1682	908/945	303/314	chrX	152701740
chrX:152701755	T T	C C	2	a0002 a0003 a0002 a0003	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	missense_variant	MODERATE	c.923T>C c.923T>C	p.Val308Ala p.Val308Ala	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	1090/1682	923/945	308/314	chrX	152701755

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:152701141	C C	T T	2	a0002c0002 a0003c0006 a0002c0002 a0003c0006	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	synonymous_variant	LOW	c.309C>T c.309C>T	p.Ser103Ser p.Ser103Ser	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	476/1682	309/945	103/314	chrX	152701141
chrX:152701267	T T	C C	3	a0001c0005 a0001c0007 a0002c0002 a0001c0005 a0001c0007 a0002c0002	30	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(27): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01891.hp2 HG02083.hp1 HG02965.hp1 HG03239.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18953.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1	synonymous_variant	LOW	c.435T>C c.435T>C	p.Tyr145Tyr p.Tyr145Tyr	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	602/1682	435/945	145/314	chrX	152701267
chrX:152701444	C C	T T	1	a0001c0003 a0001c0003	3	HG03195.hp1 NA19030.hp1 NA19240.hp2 HG03195.hp1 NA19030.hp1 NA19240.hp2	synonymous_variant	LOW	c.612C>T c.612C>T	p.Ile204Ile p.Ile204Ile	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	779/1682	612/945	204/314	chrX	152701444
chrX:152701636	T T	C C	3	a0001c0007 a0002c0002 a0003c0006 a0001c0007 a0002c0002 a0003c0006	30	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(27): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03239.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	synonymous_variant	LOW	c.804T>C c.804T>C	p.Cys268Cys p.Cys268Cys	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	971/1682	804/945	268/314	chrX	152701636
chrX:152701642	A A	G G	3	a0001c0007 a0002c0002 a0003c0006 a0001c0007 a0002c0002 a0003c0006	30	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(27): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03239.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	synonymous_variant	LOW	c.810A>G c.810A>G	p.Glu270Glu p.Glu270Glu	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	977/1682	810/945	270/314	chrX	152701642

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:152700630	G G	A A	1	a0001c0001t0011 a0001c0001t0011	1	NA20129.hp1 NA20129.hp1	5_prime_UTR_variant	MODIFIER	c.-123G>A c.-123G>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	2/3	203	chrX	152700630
chrX:152700640	G G	T T	1	a0001c0001t0015 a0001c0001t0015	1	HG04199.hp1 HG04199.hp1	5_prime_UTR_variant	MODIFIER	c.-113G>T c.-113G>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	2/3	193	chrX	152700640
chrX:152700643	C C	G G	4	a0001c0001t0004 a0001c0001t0009 a0003c0006t0010 others(1): Show a0001c0001t0004 a0001c0001t0009 a0003c0006t0010 a0004c0004t0008	11	HG01884.hp2 HG02280.hp1 HG02809.hp1 others(8): Show HG01884.hp2 HG02280.hp1 HG02809.hp1 HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2 NA18940.hp1 NA18994.hp1 NA19030.hp2 NA19240.hp1	5_prime_UTR_variant	MODIFIER	c.-110C>G c.-110C>G	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	2/3	190	chrX	152700643
chrX:152700651	C C	A A	2	a0001c0001t0004 a0004c0004t0008 a0001c0001t0004 a0004c0004t0008	7	HG02280.hp1 HG02809.hp1 HG02818.hp2 others(4): Show HG02280.hp1 HG02809.hp1 HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2 NA19030.hp2	5_prime_UTR_variant	MODIFIER	c.-102C>A c.-102C>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	2/3	182	chrX	152700651
chrX:152700771	A A	T T	3	a0001c0001t0004 a0003c0006t0010 a0004c0004t0008 a0001c0001t0004 a0003c0006t0010 a0004c0004t0008	9	HG01884.hp2 HG02280.hp1 HG02809.hp1 others(6): Show HG01884.hp2 HG02280.hp1 HG02809.hp1 HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2 NA19030.hp2 NA19240.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-62A>T c.-62A>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3		chrX	152700771
chrX:152700796	G G	A A	1	a0001c0001t0012 a0001c0001t0012	1	NA19010.hp2 NA19010.hp2	5_prime_UTR_variant	MODIFIER	c.-37G>A c.-37G>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	37	chrX	152700796
chrX:152701818	C C	T T	4	a0002c0002t0002 a0002c0002t0006 a0002c0002t0007 others(1): Show a0002c0002t0002 a0002c0002t0006 a0002c0002t0007 a0003c0006t0010	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	3_prime_UTR_variant	MODIFIER	c.41C>T c.41C>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	41	chrX	152701818
chrX:152701843	G G	C C	3	a0002c0002t0002 a0002c0002t0006 a0003c0006t0010 a0002c0002t0002 a0002c0002t0006 a0003c0006t0010	27	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(24): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	3_prime_UTR_variant	MODIFIER	c.66G>C c.66G>C	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	66	chrX	152701843
chrX:152701849	C C	G G	3	a0001c0001t0003 a0001c0001t0014 a0004c0004t0008 a0001c0001t0003 a0001c0001t0014 a0004c0004t0008	15	HG00280.hp1 HG01168.hp1 HG01256.hp1 others(12): Show HG00280.hp1 HG01168.hp1 HG01256.hp1 HG01358.hp1 HG02004.hp1 HG02071.hp2 HG02280.hp1 HG02523.hp2 NA18942.hp2 NA18944.hp1 NA18950.hp2 NA18986.hp1 NA19030.hp2 NA19055.hp1 NA19056.hp1	3_prime_UTR_variant	MODIFIER	c.72C>G c.72C>G	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	72	chrX	152701849
chrX:152701954	ATTATTCT others(38): Show ATTATTCTTTGTTTCCTGTTGGAGTTGTTCAAATGTTCCTTTTAAC	A A	1	a0001c0001t0014 a0001c0001t0014	1	HG02071.hp2 HG02071.hp2	3_prime_UTR_variant	MODIFIER	c.178_222delTTATTC others(39): Show c.178_222delTTATTCTTTGTTTCCTGTTGGAGTTGTTCAAATGTT CCTTTTAAC	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	178	chrX	152701954
chrX:152702096	C C	T T	3	a0002c0002t0002 a0002c0002t0006 a0002c0002t0007 a0002c0002t0002 a0002c0002t0006 a0002c0002t0007	27	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(24): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1	3_prime_UTR_variant	MODIFIER	c.319C>T c.319C>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	319	chrX	152702096
chrX:152702100	A A	G G	3	a0002c0002t0002 a0002c0002t0006 a0002c0002t0007 a0002c0002t0002 a0002c0002t0006 a0002c0002t0007	27	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(24): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1	3_prime_UTR_variant	MODIFIER	c.323A>G c.323A>G	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	323	chrX	152702100
chrX:152702148	T T	C C	2	a0001c0001t0005 a0001c0001t0012 a0001c0001t0005 a0001c0001t0012	4	NA18963.hp2 NA19010.hp2 NA19011.hp2 others(1): Show NA18963.hp2 NA19010.hp2 NA19011.hp2 NA19067.hp1	3_prime_UTR_variant	MODIFIER	c.371T>C c.371T>C	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	371	chrX	152702148
chrX:152702151	T T	A A	4	a0002c0002t0002 a0002c0002t0006 a0002c0002t0007 others(1): Show a0002c0002t0002 a0002c0002t0006 a0002c0002t0007 a0003c0006t0010	29	HG00323.hp1 HG01070.hp1 HG01516.hp2 others(26): Show HG00323.hp1 HG01070.hp1 HG01516.hp2 HG01884.hp2 HG02083.hp1 HG02965.hp1 HG03491.hp1 HG03669.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA19002.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19077.hp1 NA19240.hp1	3_prime_UTR_variant	MODIFIER	c.374T>A c.374T>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	374	chrX	152702151
chrX:152702165	T T	A A	1	a0002c0002t0006 a0002c0002t0006	2	NA18991.hp1 NA19068.hp1 NA18991.hp1 NA19068.hp1	3_prime_UTR_variant	MODIFIER	c.388T>A c.388T>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	388	chrX	152702165
chrX:152702248	T T	C C	1	a0003c0006t0010 a0003c0006t0010	2	HG01884.hp2 NA19240.hp1 HG01884.hp2 NA19240.hp1	3_prime_UTR_variant	MODIFIER	c.471T>C c.471T>C	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	471	chrX	152702248
chrX:152702266	A A	C C	1	a0001c0003t0013 a0001c0003t0013	1	NA19240.hp2 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.489A>C c.489A>C	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	3/3	489	chrX	152702266

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:152698836	C C	T T	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	NA20752.hp1 NA20752.hp1	splice_region_variant&intron_variant	LOW	c.-132+7C>T c.-132+7C>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152698836
chrX:152698962	A A	AC AC	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.-132+137dupC c.-132+137dupC	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	152698962
chrX:152698971	A A	AC AC	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	NA19078.hp2 NA19078.hp2	intron_variant	MODIFIER	c.-132+147dupC c.-132+147dupC	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	152698971
chrX:152699045	G G	T T	1	a0002c0002t0002g0021 a0002c0002t0002g0021	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-132+216G>T c.-132+216G>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152699045
chrX:152699078	A A	AG AG	1	a0001c0001t0005g0020 a0001c0001t0005g0020	1	NA18963.hp2 NA18963.hp2	intron_variant	MODIFIER	c.-132+251dupG c.-132+251dupG	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	152699078
chrX:152699086	G G	A A	1	a0001c0001t0001g0011 a0001c0001t0001g0011	1	HG00099.hp1 HG00099.hp1	intron_variant	MODIFIER	c.-132+257G>A c.-132+257G>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152699086
chrX:152699133	G G	A A	1	a0001c0001t0004g0012 a0001c0001t0004g0012	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.-132+304G>A c.-132+304G>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152699133
chrX:152699134	T T	TC TC	1	a0002c0002t0002g0019 a0002c0002t0002g0019	1	HG02965.hp1 HG02965.hp1	intron_variant	MODIFIER	c.-132+310dupC c.-132+310dupC	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	152699134
chrX:152699160	CCCCCATT CCCCCATT	C C	15	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0010 others(12): Show a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0005g0002 a0001c0001t0005g0020 a0001c0001t0012g0002 a0001c0007t0001g0002 a0002c0002t0002g0002 a0002c0002t0002g0013 a0002c0002t0002g0015 a0002c0002t0002g0019 a0002c0002t0002g0021 a0002c0002t0006g0002 a0002c0002t0007g0002	70	HG00140.hp1 HG00323.hp1 HG00323.hp2 others(67): Show HG00140.hp1 HG00323.hp1 HG00323.hp2 HG00642.hp1 HG00735.hp1 HG01070.hp1 HG01516.hp2 HG02015.hp1 HG02083.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02280.hp2 HG02723.hp2 HG02738.hp1 HG02965.hp1 HG03195.hp2 HG03225.hp1 HG03239.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG04184.hp2 HG06807.hp1 NA18906.hp1 NA18939.hp1 NA18945.hp1 NA18951.hp1 NA18951.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18963.hp1 NA18963.hp2 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18984.hp1 NA18985.hp1 NA18991.hp1 NA18993.hp1 NA18993.hp2 NA19002.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp2 NA19062.hp1 NA19064.hp1 NA19067.hp1 NA19068.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19076.hp1 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19082.hp1 NA19086.hp1 NA19087.hp2 NA19090.hp1	intron_variant	MODIFIER	c.-132+342_-132+348d others(9): Show c.-132+342_-132+348delCATTCCC	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	152699160
chrX:152699319	G G	A A	2	a0001c0001t0004g0005 a0001c0001t0004g0016 a0001c0001t0004g0005 a0001c0001t0004g0016	4	HG02818.hp2 HG02922.hp1 HG06807.hp2 others(1): Show HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-132+490G>A c.-132+490G>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152699319
chrX:152699354	G G	GC GC	1	a0001c0001t0005g0020 a0001c0001t0005g0020	1	NA18963.hp2 NA18963.hp2	intron_variant	MODIFIER	c.-132+528dupC c.-132+528dupC	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	152699354
chrX:152699380	G G	T T	1	a0002c0002t0002g0015 a0002c0002t0002g0015	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.-132+551G>T c.-132+551G>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152699380
chrX:152699398	A A	G G	1	a0003c0006t0010g0009 a0003c0006t0010g0009	2	HG01884.hp2 NA19240.hp1 HG01884.hp2 NA19240.hp1	intron_variant	MODIFIER	c.-132+569A>G c.-132+569A>G	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152699398
chrX:152699432	C C	T T	2	a0001c0001t0004g0005 a0001c0001t0004g0016 a0001c0001t0004g0005 a0001c0001t0004g0016	4	HG02818.hp2 HG02922.hp1 HG06807.hp2 others(1): Show HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-132+603C>T c.-132+603C>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152699432
chrX:152699640	AC AC	A A	1	a0002c0002t0002g0013 a0002c0002t0002g0013	1	HG03491.hp1 HG03491.hp1	intron_variant	MODIFIER	c.-132+813delC c.-132+813delC	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	152699640
chrX:152699733	AG AG	A A	3	a0001c0001t0001g0003 a0001c0003t0001g0003 a0001c0003t0013g0003 a0001c0001t0001g0003 a0001c0003t0001g0003 a0001c0003t0013g0003	6	HG02647.hp1 HG03098.hp1 HG03195.hp1 others(3): Show HG02647.hp1 HG03098.hp1 HG03195.hp1 HG03486.hp2 NA19030.hp1 NA19240.hp2	intron_variant	MODIFIER	c.-131-885delG c.-131-885delG	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	152699733
chrX:152699759	C C	T T	1	a0001c0001t0001g0008 a0001c0001t0001g0008	2	HG01934.hp1 NA20129.hp2 HG01934.hp1 NA20129.hp2	intron_variant	MODIFIER	c.-131-863C>T c.-131-863C>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152699759
chrX:152699904	G G	A A	2	a0001c0001t0004g0005 a0001c0001t0004g0016 a0001c0001t0004g0005 a0001c0001t0004g0016	4	HG02818.hp2 HG02922.hp1 HG06807.hp2 others(1): Show HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-131-718G>A c.-131-718G>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152699904
chrX:152699969	G G	A A	2	a0001c0001t0004g0012 a0003c0006t0010g0009 a0001c0001t0004g0012 a0003c0006t0010g0009	3	HG01884.hp2 HG02809.hp1 NA19240.hp1 HG01884.hp2 HG02809.hp1 NA19240.hp1	intron_variant	MODIFIER	c.-131-653G>A c.-131-653G>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152699969
chrX:152700028	C C	A A	1	a0001c0001t0001g0006 a0001c0001t0001g0006	3	HG01167.hp1 HG01168.hp2 HG01175.hp1 HG01167.hp1 HG01168.hp2 HG01175.hp1	intron_variant	MODIFIER	c.-131-594C>A c.-131-594C>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152700028
chrX:152700211	C C	T T	5	a0001c0001t0004g0005 a0001c0001t0004g0012 a0001c0001t0004g0016 others(2): Show a0001c0001t0004g0005 a0001c0001t0004g0012 a0001c0001t0004g0016 a0003c0006t0010g0009 a0004c0004t0008g0007	9	HG01884.hp2 HG02280.hp1 HG02809.hp1 others(6): Show HG01884.hp2 HG02280.hp1 HG02809.hp1 HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2 NA19030.hp2 NA19240.hp1	intron_variant	MODIFIER	c.-131-411C>T c.-131-411C>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152700211
chrX:152700212	C C	T T	1	a0001c0001t0015g0018 a0001c0001t0015g0018	1	HG04199.hp1 HG04199.hp1	intron_variant	MODIFIER	c.-131-410C>T c.-131-410C>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152700212
chrX:152700303	C C	G G	2	a0001c0001t0004g0005 a0001c0001t0004g0016 a0001c0001t0004g0005 a0001c0001t0004g0016	4	HG02818.hp2 HG02922.hp1 HG06807.hp2 others(1): Show HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-131-319C>G c.-131-319C>G	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152700303
chrX:152700308	C C	G G	2	a0001c0001t0004g0005 a0001c0001t0004g0016 a0001c0001t0004g0005 a0001c0001t0004g0016	4	HG02818.hp2 HG02922.hp1 HG06807.hp2 others(1): Show HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-131-314C>G c.-131-314C>G	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152700308
chrX:152700310	G G	C C	2	a0001c0001t0004g0005 a0001c0001t0004g0016 a0001c0001t0004g0005 a0001c0001t0004g0016	4	HG02818.hp2 HG02922.hp1 HG06807.hp2 others(1): Show HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-131-312G>C c.-131-312G>C	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152700310
chrX:152700310	GT GT	G G	1	a0001c0001t0001g0011 a0001c0001t0001g0011	1	HG00099.hp1 HG00099.hp1	intron_variant	MODIFIER	c.-131-310delT c.-131-310delT	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	152700310
chrX:152700331	G G	A A	1	a0001c0001t0001g0004 a0001c0001t0001g0004	3	HG02280.hp2 HG03195.hp2 HG06807.hp1 HG02280.hp2 HG03195.hp2 HG06807.hp1	intron_variant	MODIFIER	c.-131-291G>A c.-131-291G>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152700331
chrX:152700498	C C	A A	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG00735.hp1 HG00735.hp1	intron_variant	MODIFIER	c.-131-124C>A c.-131-124C>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152700498
chrX:152700531	G G	A A	1	a0001c0001t0004g0016 a0001c0001t0004g0016	1	HG06807.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-131-91G>A c.-131-91G>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152700531
chrX:152700576	C C	T T	5	a0001c0001t0004g0005 a0001c0001t0004g0012 a0001c0001t0004g0016 others(2): Show a0001c0001t0004g0005 a0001c0001t0004g0012 a0001c0001t0004g0016 a0003c0006t0010g0009 a0004c0004t0008g0007	9	HG01884.hp2 HG02280.hp1 HG02809.hp1 others(6): Show HG01884.hp2 HG02280.hp1 HG02809.hp1 HG02818.hp2 HG02922.hp1 HG06807.hp2 NA18906.hp2 NA19030.hp2 NA19240.hp1	intron_variant	MODIFIER	c.-131-46C>T c.-131-46C>T	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	1/2		chrX	152700576
chrX:152700708	G G	A A	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG03239.hp2 HG03239.hp2	intron_variant	MODIFIER	c.-66+21G>A c.-66+21G>A	MAGEA3	ENSG00000221867.9	transcript	ENST00000370278.4	protein_coding	2/2		chrX	152700708

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🧬 JoGo Online Haplotype Explorer MAGEA3_chrX_152693794_152707347

JoGo Local Haplotype Explorer (on iGV) MAGEA3_chrX_152693794_152707347

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 5)

CCoding Level Haplotype Info (Total: 8)

TTranscript Level Haplotype Info (Total: 15)

GGenebody Level Haplotype Info (Total: 22)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 8)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 19)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 36)

Haplotype Details by Sample (Haploid Level) (Total: 192)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 17)

CCoding Level Variants (Synonymous Mutations) (Total: 5)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 17)

GGenebody Level Haplotype Variants (Intron) (Total: 31)

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Annotation (Repeats)

Annotation (SNP Array)