JoGo: Joint Open Genome and Omics Platform

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geneid	4100
ensemblid	ENSG00000198681.7
hgncid	6796
symbol	MAGEA1
name	MAGE family member A1
refseq_nuc	NM_004988.5
refseq_prot	NP_004979.3
ensembl_nuc	ENST00000356661.7
ensembl_prot	ENSP00000349085.5
mane_status	MANE Select
chr	chrX
start	153179284
end	153183880
strand	+
ver	v1.2
region	chrX:153179284-153183880
region5000	chrX:153174284-153188880
regionname0	MAGEA1_chrX_153179284_153183880
regionname5000	MAGEA1_chrX_153174284_153188880

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	309	177	46	42	57	10	20	48	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0002	0/0	309	94	10	15	66	0	3	48	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0003	0/0	309	70	23	8	27	1	11	21	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0004	0/0	301	1	0	0	1	0	0	1	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0005	0/0	307	1	0	0	1	0	0	1	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	930	177	46	42	57	10	20	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
c0002	0/0	930	94	10	15	66	0	3	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
c0003	0/0	930	46	2	5	27	1	11	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
c0004	0/0	930	24	21	3	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
c0005	0/0	924	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
c0006	0/0	929	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	782	180	57	42	49	10	20	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0002	0/0	782	94	10	15	67	0	2	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0003	0/0	782	44	2	5	25	1	11	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0004	0/0	782	9	7	2	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0005	0/0	782	8	0	0	8	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0006	0/0	782	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0007	0/0	781	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0008	0/0	782	1	0	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0009	0/0	782	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0010	0/0	781	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0011	0/0	783	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0012	0/0	782	1	0	0	0	0	1	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
t0013	0/0	782	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	140	34	40	36	9	19	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0002	0/0	81	2	14	62	0	3	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0003	0/0	31	2	2	17	0	10	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0004	0/0	18	0	2	16	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0005	0/0	11	10	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0006	0/0	8	7	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0007	0/0	7	6	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0008	0/0	6	0	0	6	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0009	0/0	3	3	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0010	0/0	3	0	2	0	1	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0011	0/0	2	0	0	2	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0012	0/0	2	2	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0013	0/0	2	2	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0014	0/0	2	1	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0015	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0016	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0017	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0018	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0019	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0020	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0021	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0022	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0023	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0024	0/0	1	0	0	0	0	1	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0025	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0026	0/0	1	0	0	0	1	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0027	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0028	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0029	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0030	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0031	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0032	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0033	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0034	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0035	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0036	0/0	1	0	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0037	0/0	1	0	0	0	0	1	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0038	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0039	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0040	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
g0041	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	930	177	46	42	57	10	20	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0002c0002	0/0	930	94	10	15	66	0	3	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0003c0003	0/0	930	46	2	5	27	1	11	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0003c0004	0/0	930	24	21	3	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0004c0006	0/0	929	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0005c0005	0/0	924	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	1711	167	45	41	49	10	20	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0001c0001t0005	0/0	1711	8	0	0	8	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0001c0001t0008	0/0	1711	1	0	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0001c0001t0009	0/0	1711	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0002c0002t0002	0/0	1711	93	10	15	66	0	2	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0002c0002t0012	0/0	1711	1	0	0	0	0	1	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0003c0003t0003	0/0	1711	44	2	5	25	1	11	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0003c0003t0010	0/0	1710	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0003c0003t0011	0/0	1712	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0003c0004t0001	0/0	1711	13	12	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0003c0004t0004	0/0	1711	9	7	2	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0003c0004t0006	0/0	1711	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0003c0004t0013	0/0	1711	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0004c0006t0002	0/0	1710	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880
a0005c0005t0007	0/0	1704	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	copy fasta	chrX	153174284	153188880

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/1	138	33	39	36	9	19	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0004	0/0	12	0	2	10	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0009	0/0	3	3	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0011	0/0	2	0	0	2	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0012	0/0	2	2	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0013	0/0	2	2	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0023	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0024	0/0	1	0	0	0	0	1	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0026	0/0	1	0	0	0	1	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0027	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0028	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0030	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0032	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0001g0035	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0005g0004	0/0	6	0	0	6	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0005g0025	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0005g0029	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0008g0001	0/0	1	0	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0001c0001t0009g0001	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0002c0002t0002g0002	0/0	80	2	14	62	0	2	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0002c0002t0002g0007	0/0	7	6	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0002c0002t0002g0016	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0002c0002t0002g0017	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0002c0002t0002g0018	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0002c0002t0002g0019	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0002c0002t0002g0020	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0002c0002t0002g0021	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0002c0002t0012g0002	0/0	1	0	0	0	0	1	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0003t0003g0003	0/0	30	2	2	16	0	10	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0003t0003g0008	0/0	6	0	0	6	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0003t0003g0010	0/0	3	0	2	0	1	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0003t0003g0036	0/0	1	0	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0003t0003g0037	0/0	1	0	0	0	0	1	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0003t0003g0038	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0003t0003g0040	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0003t0003g0041	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0003t0010g0039	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0003t0011g0003	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0004t0001g0005	0/0	11	10	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0004t0001g0033	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0004t0001g0034	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0004t0004g0006	0/0	7	6	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0004t0004g0014	0/0	2	1	1	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0004t0006g0006	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0003c0004t0013g0031	0/0	1	1	0	0	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0004c0006t0002g0015	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
a0005c0005t0007g0022	0/0	1	0	0	1	0	0	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0003	c0003	t0003	g0010	EUR	GBR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00280	hp1	a0001	c0001	t0001	g0026	EUR	FIN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00408	hp2	a0002	c0002	t0002	g0002	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00423	hp2	a0002	c0002	t0002	g0002	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00438	hp1	a0002	c0002	t0002	g0002	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00438	hp2	a0003	c0003	t0003	g0003	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00544	hp1	a0003	c0003	t0003	g0003	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00544	hp2	a0003	c0003	t0003	g0003	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00597	hp1	a0002	c0002	t0002	g0002	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00597	hp2	a0003	c0003	t0003	g0003	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00609	hp1	a0002	c0002	t0002	g0002	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00621	hp1	a0001	c0001	t0005	g0025	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00639	hp2	a0002	c0002	t0002	g0002	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00642	hp1	a0003	c0004	t0001	g0005	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00673	hp1	a0002	c0002	t0002	g0002	EAS	CHS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00733	hp1	a0002	c0002	t0002	g0002	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00733	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00735	hp1	a0003	c0004	t0004	g0006	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00735	hp2	a0001	c0001	t0001	g0004	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01070	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01099	hp1	a0003	c0003	t0003	g0036	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01106	hp1	a0003	c0003	t0003	g0010	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01168	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01169	hp2	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01243	hp1	a0003	c0004	t0004	g0014	AMR	PUR	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01255	hp1	a0001	c0001	t0008	g0001	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01257	hp1	a0001	c0001	t0001	g0004	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01257	hp2	a0002	c0002	t0002	g0002	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01258	hp1	a0002	c0002	t0002	g0002	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01346	hp1	a0003	c0003	t0003	g0003	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01358	hp1	a0003	c0003	t0003	g0010	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01433	hp1	a0002	c0002	t0002	g0002	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01516	hp2	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01884	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01884	hp2	a0002	c0002	t0002	g0002	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01891	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01891	hp2	a0002	c0002	t0002	g0007	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01928	hp1	a0002	c0002	t0002	g0002	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01934	hp1	a0002	c0002	t0002	g0007	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01975	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01978	hp1	a0002	c0002	t0002	g0002	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01978	hp2	a0002	c0002	t0002	g0002	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01981	hp2	a0002	c0002	t0002	g0002	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01993	hp2	a0002	c0002	t0002	g0002	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02004	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02027	hp1	a0002	c0002	t0002	g0002	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02040	hp1	a0002	c0002	t0002	g0002	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02055	hp1	a0001	c0001	t0001	g0030	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02056	hp1	a0002	c0002	t0002	g0002	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02071	hp1	a0002	c0002	t0002	g0002	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02080	hp1	a0002	c0002	t0002	g0002	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02080	hp2	a0002	c0002	t0002	g0002	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02129	hp1	a0002	c0002	t0002	g0002	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02132	hp1	a0001	c0001	t0001	g0004	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02148	hp1	a0002	c0002	t0002	g0002	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02155	hp1	a0003	c0003	t0003	g0003	EAS	CDX	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02155	hp2	a0002	c0002	t0002	g0020	EAS	CDX	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02165	hp1	a0002	c0002	t0002	g0002	EAS	CDX	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02165	hp2	a0003	c0003	t0003	g0003	EAS	CDX	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02257	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02257	hp2	a0001	c0001	t0001	g0012	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02258	hp1	a0003	c0004	t0001	g0005	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02273	hp1	a0002	c0002	t0002	g0002	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02280	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02280	hp2	a0002	c0002	t0002	g0007	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02293	hp1	a0002	c0002	t0002	g0002	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02300	hp1	a0002	c0002	t0002	g0002	AMR	PEL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02451	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02523	hp1	a0002	c0002	t0002	g0002	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02523	hp2	a0002	c0002	t0002	g0002	EAS	KHV	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02572	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02615	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02622	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02630	hp1	a0002	c0002	t0002	g0019	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02630	hp2	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02723	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02723	hp2	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02738	hp1	a0003	c0003	t0003	g0003	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02818	hp1	a0003	c0004	t0001	g0005	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02818	hp2	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02886	hp1	a0001	c0001	t0001	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02886	hp2	a0001	c0001	t0009	g0001	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02895	hp1	a0003	c0004	t0004	g0006	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02896	hp1	a0001	c0001	t0001	g0035	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02896	hp2	a0003	c0004	t0001	g0005	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02897	hp1	a0003	c0004	t0001	g0005	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02897	hp2	a0003	c0004	t0004	g0006	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02922	hp1	a0003	c0004	t0001	g0005	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02922	hp2	a0001	c0001	t0001	g0009	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02970	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02970	hp2	a0003	c0004	t0001	g0005	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02976	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02976	hp2	a0001	c0001	t0001	g0009	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03017	hp1	a0003	c0003	t0003	g0037	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03041	hp1	a0003	c0004	t0001	g0005	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03041	hp2	a0001	c0001	t0001	g0032	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03098	hp1	a0003	c0004	t0004	g0014	AFR	MSL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03195	hp1	a0003	c0003	t0003	g0003	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03195	hp2	a0002	c0002	t0002	g0007	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03225	hp1	a0001	c0001	t0001	g0012	AFR	MSL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03453	hp1	a0001	c0001	t0001	g0023	AFR	MSL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03453	hp2	a0003	c0004	t0004	g0006	AFR	MSL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03486	hp1	a0002	c0002	t0002	g0002	AFR	MSL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03486	hp2	a0003	c0004	t0013	g0031	AFR	MSL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03490	hp1	a0003	c0003	t0003	g0003	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03491	hp2	a0003	c0003	t0003	g0003	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03492	hp1	a0003	c0003	t0003	g0003	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03516	hp1	a0003	c0004	t0004	g0006	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03516	hp2	a0003	c0004	t0001	g0005	AFR	ESN	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03540	hp1	a0002	c0002	t0002	g0017	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03540	hp2	a0001	c0001	t0001	g0028	AFR	GWD	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03579	hp1	a0001	c0001	t0001	g0009	AFR	MSL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03704	hp1	a0002	c0002	t0002	g0002	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03704	hp2	a0003	c0003	t0003	g0003	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03831	hp1	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03834	hp1	a0003	c0003	t0003	g0003	SAS	BEB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03927	hp1	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03942	hp1	a0003	c0003	t0003	g0003	SAS	BEB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG04184	hp1	a0003	c0003	t0003	g0003	SAS	BEB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG04184	hp2	a0002	c0002	t0002	g0002	SAS	BEB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG04199	hp1	a0003	c0003	t0003	g0003	SAS	STU	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG04204	hp1	a0002	c0002	t0012	g0002	SAS	STU	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG04228	hp1	a0001	c0001	t0001	g0024	SAS	STU	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18747	hp1	a0002	c0002	t0002	g0002	EAS	CHB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18906	hp1	a0003	c0004	t0001	g0034	AFR	YRI	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18906	hp2	a0001	c0001	t0001	g0001	AFR	YRI	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18940	hp1	a0001	c0001	t0005	g0029	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18941	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18941	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18943	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18945	hp1	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18946	hp1	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18946	hp2	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18947	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18947	hp2	a0003	c0003	t0003	g0008	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18949	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18949	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18950	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18950	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18951	hp1	a0003	c0003	t0003	g0041	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18953	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18954	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18954	hp2	a0001	c0001	t0001	g0011	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18956	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18956	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18957	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18957	hp2	a0002	c0002	t0002	g0016	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18961	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18962	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18964	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18964	hp2	a0003	c0003	t0003	g0008	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18966	hp1	a0002	c0002	t0002	g0018	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18967	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18968	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18968	hp2	a0001	c0001	t0005	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18970	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18972	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18972	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18973	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18973	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18974	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18975	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18975	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18977	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18978	hp1	a0003	c0003	t0011	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18978	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18979	hp1	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18979	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18980	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18980	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18981	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18981	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18984	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18986	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18988	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18990	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18991	hp1	a0001	c0001	t0001	g0027	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18991	hp2	a0002	c0002	t0002	g0021	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18994	hp1	a0001	c0001	t0005	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18995	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18998	hp1	a0003	c0003	t0003	g0008	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18998	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18999	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19000	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19001	hp1	a0003	c0003	t0003	g0038	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19001	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19002	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19002	hp2	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19003	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19003	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19005	hp1	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19006	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19007	hp1	a0001	c0001	t0001	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19009	hp1	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19010	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19010	hp2	a0001	c0001	t0005	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19012	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19030	hp1	a0003	c0004	t0001	g0033	AFR	LWK	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19030	hp2	a0001	c0001	t0001	g0013	AFR	LWK	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19055	hp1	a0005	c0005	t0007	g0022	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19056	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19057	hp1	a0004	c0006	t0002	g0015	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19057	hp2	a0001	c0001	t0005	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19058	hp1	a0001	c0001	t0005	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19060	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19062	hp1	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19063	hp1	a0003	c0003	t0003	g0008	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19065	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19066	hp1	a0003	c0003	t0003	g0008	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19067	hp1	a0001	c0001	t0001	g0011	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19072	hp1	a0003	c0003	t0010	g0039	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19074	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19075	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19076	hp1	a0003	c0003	t0003	g0040	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19077	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19077	hp2	a0003	c0003	t0003	g0008	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19080	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19080	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19081	hp1	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19081	hp2	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19082	hp1	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19083	hp1	a0001	c0001	t0005	g0004	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19085	hp1	a0003	c0003	t0003	g0003	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19086	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19091	hp1	a0002	c0002	t0002	g0002	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19240	hp1	a0001	c0001	t0001	g0001	AFR	YRI	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA19240	hp2	a0001	c0001	t0001	g0001	AFR	YRI	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA20129	hp1	a0002	c0002	t0002	g0007	AFR	ASW	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA20129	hp2	a0003	c0004	t0001	g0005	AFR	ASW	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA20905	hp1	a0003	c0003	t0003	g0003	SAS	GIH	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01123	hp1	a0003	c0003	t0003	g0003	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02109	hp1	a0002	c0002	t0002	g0007	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02109	hp2	a0003	c0004	t0004	g0006	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02486	hp1	a0003	c0004	t0006	g0006	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02559	hp1	a0001	c0001	t0001	g0001	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG02559	hp2	a0003	c0004	t0004	g0006	AFR	ACB	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG06807	hp1	a0001	c0001	t0001	g0001	AFR	USA	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
HG06807	hp2	a0003	c0004	t0001	g0005	AFR	USA	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA20300	hp1	a0001	c0001	t0001	g0013	AFR	USA	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA20300	hp2	a0003	c0003	t0003	g0003	AFR	USA	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA21309	hp1	a0002	c0002	t0002	g0007	AFR	LWK	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	MAGEA1_chrX_153174284_153188880	MAGEA1	chrX	153174284	153188880

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:153182483	A A	G G	3	a0002 a0003 a0004 a0002 a0003 a0004	165	HG00099.hp1 HG00408.hp2 HG00423.hp2 others(162): Show HG00099.hp1 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00733.hp1 HG00735.hp1 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01358.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02630.hp1 HG02738.hp1 HG02818.hp1 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02970.hp2 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03195.hp1 HG03195.hp2 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG06807.hp2 NA18747.hp1 NA18906.hp1 NA18941.hp2 NA18945.hp1 NA18946.hp1 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18951.hp1 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18998.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19010.hp1 NA19012.hp1 NA19030.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19066.hp1 NA19072.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19085.hp1 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20905.hp1 NA21309.hp1	missense_variant	MODERATE	c.94A>G c.94A>G	p.Thr32Ala p.Thr32Ala	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	314/1711	94/930	32/309		chrX	153182483
chrX:153182604	G G	A A	2	a0002 a0004 a0002 a0004	95	HG00408.hp2 HG00423.hp2 HG00438.hp1 others(92): Show HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG01257.hp2 HG01258.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp2 HG02165.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG03195.hp2 HG03486.hp1 HG03540.hp1 HG03704.hp1 HG04184.hp2 HG04204.hp1 NA18747.hp1 NA18941.hp2 NA18947.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19002.hp1 NA19006.hp1 NA19010.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19065.hp1 NA19074.hp2 NA19075.hp1 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA21309.hp1	missense_variant	MODERATE	c.215G>A c.215G>A	p.Arg72Gln p.Arg72Gln	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	435/1711	215/930	72/309		chrX	153182604
chrX:153182846	CTGGTCT CTGGTCT	C C	1	a0005 a0005	1	NA19055.hp1 NA19055.hp1	disruptive_inframe_deletion	MODERATE	c.459_464delGGTCTT c.459_464delGGTCTT	p.Val154_Phe155del p.Val154_Phe155del	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	679/1711	459/930	153/309	INFO_REALIGN_3_PRIME	chrX	153182846
chrX:153183262	CT CT	C C	1	a0004 a0004	1	NA19057.hp1 NA19057.hp1	frameshift_variant	HIGH	c.878delT c.878delT	p.Phe293fs p.Phe293fs	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	1098/1711	878/930	293/309	INFO_REALIGN_3_PRIME	chrX	153183262

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:153183202	C C	T T	1	a0003c0003 a0003c0003	46	HG00099.hp1 HG00438.hp2 HG00544.hp1 others(43): Show HG00099.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp2 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01346.hp1 HG01358.hp1 HG02155.hp1 HG02165.hp2 HG02738.hp1 HG03017.hp1 HG03195.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04199.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp2 NA18951.hp1 NA18964.hp2 NA18978.hp1 NA18979.hp1 NA18998.hp1 NA19001.hp1 NA19002.hp2 NA19005.hp1 NA19009.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp2 NA19081.hp1 NA19082.hp1 NA19085.hp1 NA20300.hp2 NA20905.hp1	synonymous_variant	LOW	c.813C>T c.813C>T	p.Leu271Leu p.Leu271Leu	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	1033/1711	813/930	271/309			chrX	153183202

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:153179331	G G	A A	1	a0003c0004t0006 a0003c0004t0006	1	HG02486.hp1 HG02486.hp1	5_prime_UTR_variant	MODIFIER	c.-173G>A c.-173G>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/3	3059		chrX	153179331
chrX:153179344	C C	T T	1	a0003c0004t0013 a0003c0004t0013	1	HG03486.hp2 HG03486.hp2	5_prime_UTR_variant	MODIFIER	c.-160C>T c.-160C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/3	3046		chrX	153179344
chrX:153179361	G G	A A	1	a0001c0001t0005 a0001c0001t0005	8	HG00621.hp1 NA18940.hp1 NA18968.hp2 others(5): Show HG00621.hp1 NA18940.hp1 NA18968.hp2 NA18994.hp1 NA19010.hp2 NA19057.hp2 NA19058.hp1 NA19083.hp1	5_prime_UTR_variant	MODIFIER	c.-143G>A c.-143G>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/3	3029		chrX	153179361
chrX:153182342	GC GC	G G	1	a0005c0005t0007 a0005c0005t0007	1	NA19055.hp1 NA19055.hp1	5_prime_UTR_variant	MODIFIER	c.-45delC c.-45delC	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	45	INFO_REALIGN_3_PRIME	chrX	153182342
chrX:153182370	C C	T T	3	a0002c0002t0002 a0002c0002t0012 a0004c0006t0002 a0002c0002t0002 a0002c0002t0012 a0004c0006t0002	95	HG00408.hp2 HG00423.hp2 HG00438.hp1 others(92): Show HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG01257.hp2 HG01258.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp2 HG02165.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG03195.hp2 HG03486.hp1 HG03540.hp1 HG03704.hp1 HG04184.hp2 HG04204.hp1 NA18747.hp1 NA18941.hp2 NA18947.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19002.hp1 NA19006.hp1 NA19010.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19065.hp1 NA19074.hp2 NA19075.hp1 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA21309.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-20C>T c.-20C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3			chrX	153182370
chrX:153183336	A A	G G	3	a0003c0003t0003 a0003c0003t0010 a0003c0003t0011 a0003c0003t0003 a0003c0003t0010 a0003c0003t0011	46	HG00099.hp1 HG00438.hp2 HG00544.hp1 others(43): Show HG00099.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp2 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01346.hp1 HG01358.hp1 HG02155.hp1 HG02165.hp2 HG02738.hp1 HG03017.hp1 HG03195.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04199.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp2 NA18951.hp1 NA18964.hp2 NA18978.hp1 NA18979.hp1 NA18998.hp1 NA19001.hp1 NA19002.hp2 NA19005.hp1 NA19009.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp2 NA19081.hp1 NA19082.hp1 NA19085.hp1 NA20300.hp2 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.17A>G c.17A>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	17		chrX	153183336
chrX:153183383	C C	G G	3	a0002c0002t0002 a0002c0002t0012 a0004c0006t0002 a0002c0002t0002 a0002c0002t0012 a0004c0006t0002	95	HG00408.hp2 HG00423.hp2 HG00438.hp1 others(92): Show HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG01257.hp2 HG01258.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp2 HG02165.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG03195.hp2 HG03486.hp1 HG03540.hp1 HG03704.hp1 HG04184.hp2 HG04204.hp1 NA18747.hp1 NA18941.hp2 NA18947.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19002.hp1 NA19006.hp1 NA19010.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19065.hp1 NA19074.hp2 NA19075.hp1 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.64C>G c.64C>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	64		chrX	153183383
chrX:153183472	A A	G G	3	a0002c0002t0002 a0002c0002t0012 a0004c0006t0002 a0002c0002t0002 a0002c0002t0012 a0004c0006t0002	95	HG00408.hp2 HG00423.hp2 HG00438.hp1 others(92): Show HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG01257.hp2 HG01258.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp2 HG02165.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG03195.hp2 HG03486.hp1 HG03540.hp1 HG03704.hp1 HG04184.hp2 HG04204.hp1 NA18747.hp1 NA18941.hp2 NA18947.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19002.hp1 NA19006.hp1 NA19010.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19065.hp1 NA19074.hp2 NA19075.hp1 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.153A>G c.153A>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	153		chrX	153183472
chrX:153183522	G G	GT GT	1	a0003c0003t0011 a0003c0003t0011	1	NA18978.hp1 NA18978.hp1	3_prime_UTR_variant	MODIFIER	c.212dupT c.212dupT	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	213	INFO_REALIGN_3_PRIME	chrX	153183522
chrX:153183542	T T	C C	1	a0002c0002t0012 a0002c0002t0012	1	HG04204.hp1 HG04204.hp1	3_prime_UTR_variant	MODIFIER	c.223T>C c.223T>C	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	223		chrX	153183542
chrX:153183566	T T	C C	2	a0003c0004t0004 a0003c0004t0006 a0003c0004t0004 a0003c0004t0006	10	HG00735.hp1 HG01243.hp1 HG02109.hp2 others(7): Show HG00735.hp1 HG01243.hp1 HG02109.hp2 HG02486.hp1 HG02559.hp2 HG02895.hp1 HG02897.hp2 HG03098.hp1 HG03453.hp2 HG03516.hp1	3_prime_UTR_variant	MODIFIER	c.247T>C c.247T>C	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	247		chrX	153183566
chrX:153183607	AG AG	A A	1	a0003c0003t0010 a0003c0003t0010	1	NA19072.hp1 NA19072.hp1	3_prime_UTR_variant	MODIFIER	c.291delG c.291delG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	291	INFO_REALIGN_3_PRIME	chrX	153183607
chrX:153183647	T T	C C	1	a0001c0001t0008 a0001c0001t0008	1	HG01255.hp1 HG01255.hp1	3_prime_UTR_variant	MODIFIER	c.328T>C c.328T>C	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	328		chrX	153183647
chrX:153183656	G G	T T	1	a0001c0001t0009 a0001c0001t0009	1	HG02886.hp2 HG02886.hp2	3_prime_UTR_variant	MODIFIER	c.337G>T c.337G>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	337		chrX	153183656
chrX:153183766	C C	T T	3	a0003c0003t0003 a0003c0003t0010 a0003c0003t0011 a0003c0003t0003 a0003c0003t0010 a0003c0003t0011	46	HG00099.hp1 HG00438.hp2 HG00544.hp1 others(43): Show HG00099.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp2 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01346.hp1 HG01358.hp1 HG02155.hp1 HG02165.hp2 HG02738.hp1 HG03017.hp1 HG03195.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04199.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp2 NA18951.hp1 NA18964.hp2 NA18978.hp1 NA18979.hp1 NA18998.hp1 NA19001.hp1 NA19002.hp2 NA19005.hp1 NA19009.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp2 NA19081.hp1 NA19082.hp1 NA19085.hp1 NA20300.hp2 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.447C>T c.447C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	3/3	447		chrX	153183766

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:153179467	G G	T T	10	a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 others(7): Show a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 a0003c0003t0003g0036 a0003c0003t0003g0037 a0003c0003t0003g0038 a0003c0003t0003g0040 a0003c0003t0003g0041 a0003c0003t0010g0039 a0003c0003t0011g0003	46	HG00099.hp1 HG00438.hp2 HG00544.hp1 others(43): Show HG00099.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp2 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01346.hp1 HG01358.hp1 HG02155.hp1 HG02165.hp2 HG02738.hp1 HG03017.hp1 HG03195.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04199.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp2 NA18951.hp1 NA18964.hp2 NA18978.hp1 NA18979.hp1 NA18998.hp1 NA19001.hp1 NA19002.hp2 NA19005.hp1 NA19009.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp2 NA19081.hp1 NA19082.hp1 NA19085.hp1 NA20300.hp2 NA20905.hp1	intron_variant	MODIFIER	c.-139+102G>T c.-139+102G>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153179467
chrX:153179524	G G	C C	10	a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 others(7): Show a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 a0002c0002t0002g0017 a0002c0002t0002g0018 a0002c0002t0002g0019 a0002c0002t0002g0020 a0002c0002t0002g0021 a0002c0002t0012g0002 a0004c0006t0002g0015	95	HG00408.hp2 HG00423.hp2 HG00438.hp1 others(92): Show HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG01257.hp2 HG01258.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp2 HG02165.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG03195.hp2 HG03486.hp1 HG03540.hp1 HG03704.hp1 HG04184.hp2 HG04204.hp1 NA18747.hp1 NA18941.hp2 NA18947.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19002.hp1 NA19006.hp1 NA19010.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19065.hp1 NA19074.hp2 NA19075.hp1 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-139+159G>C c.-139+159G>C	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153179524
chrX:153179557	G G	T T	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	HG02896.hp1 HG02896.hp1	intron_variant	MODIFIER	c.-139+192G>T c.-139+192G>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153179557
chrX:153179618	A A	T T	3	a0003c0004t0001g0005 a0003c0004t0001g0033 a0003c0004t0001g0034 a0003c0004t0001g0005 a0003c0004t0001g0033 a0003c0004t0001g0034	13	HG00642.hp1 HG02258.hp1 HG02818.hp1 others(10): Show HG00642.hp1 HG02258.hp1 HG02818.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02970.hp2 HG03041.hp1 HG03516.hp2 HG06807.hp2 NA18906.hp1 NA19030.hp1 NA20129.hp2	intron_variant	MODIFIER	c.-139+253A>T c.-139+253A>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153179618
chrX:153179677	AC AC	A A	1	a0005c0005t0007g0022 a0005c0005t0007g0022	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-139+316delC c.-139+316delC	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153179677
chrX:153179678	C C	T T	1	a0001c0001t0001g0032 a0001c0001t0001g0032	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-139+313C>T c.-139+313C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153179678
chrX:153179685	C C	T T	1	a0003c0003t0003g0008 a0003c0003t0003g0008	6	NA18947.hp2 NA18964.hp2 NA18998.hp1 others(3): Show NA18947.hp2 NA18964.hp2 NA18998.hp1 NA19063.hp1 NA19066.hp1 NA19077.hp2	intron_variant	MODIFIER	c.-139+320C>T c.-139+320C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153179685
chrX:153179763	A A	G G	1	a0003c0004t0013g0031 a0003c0004t0013g0031	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.-139+398A>G c.-139+398A>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153179763
chrX:153179834	C C	G G	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.-139+469C>G c.-139+469C>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153179834
chrX:153179851	GC GC	G G	1	a0005c0005t0007g0022 a0005c0005t0007g0022	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-139+490delC c.-139+490delC	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153179851
chrX:153179911	AG AG	A A	1	a0005c0005t0007g0022 a0005c0005t0007g0022	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-139+549delG c.-139+549delG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153179911
chrX:153179930	C C	T T	1	a0002c0002t0002g0021 a0002c0002t0002g0021	1	NA18991.hp2 NA18991.hp2	intron_variant	MODIFIER	c.-139+565C>T c.-139+565C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153179930
chrX:153179975	AGGTTCAT others(42): Show AGGTTCATTTAATGGTTCTGAGGGGCGGCTTGAGATCCACTGAGGGGAGT	A A	3	a0003c0004t0004g0006 a0003c0004t0004g0014 a0003c0004t0006g0006 a0003c0004t0004g0006 a0003c0004t0004g0014 a0003c0004t0006g0006	10	HG00735.hp1 HG01243.hp1 HG02109.hp2 others(7): Show HG00735.hp1 HG01243.hp1 HG02109.hp2 HG02486.hp1 HG02559.hp2 HG02895.hp1 HG02897.hp2 HG03098.hp1 HG03453.hp2 HG03516.hp1	intron_variant	MODIFIER	c.-139+615_-139+663d others(51): Show c.-139+615_-139+663delCATTTAATGGTTCTGAGGGGCGGCTTGA GATCCACTGAGGGGAGTGGTT	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153179975
chrX:153180020	G G	C C	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	HG03453.hp1 HG03453.hp1	intron_variant	MODIFIER	c.-139+655G>C c.-139+655G>C	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180020
chrX:153180062	AG AG	A A	1	a0004c0006t0002g0015 a0004c0006t0002g0015	1	NA19057.hp1 NA19057.hp1	intron_variant	MODIFIER	c.-139+700delG c.-139+700delG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153180062
chrX:153180082	A A	T T	1	a0001c0001t0005g0029 a0001c0001t0005g0029	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.-139+717A>T c.-139+717A>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180082
chrX:153180223	A A	G G	13	a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 others(10): Show a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 a0003c0003t0003g0036 a0003c0003t0003g0037 a0003c0003t0003g0038 a0003c0003t0003g0040 a0003c0003t0003g0041 a0003c0003t0010g0039 a0003c0003t0011g0003 a0003c0004t0001g0005 a0003c0004t0001g0033 a0003c0004t0001g0034	59	HG00099.hp1 HG00438.hp2 HG00544.hp1 others(56): Show HG00099.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp2 HG00642.hp1 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01346.hp1 HG01358.hp1 HG02155.hp1 HG02165.hp2 HG02258.hp1 HG02738.hp1 HG02818.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02970.hp2 HG03017.hp1 HG03041.hp1 HG03195.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04199.hp1 HG06807.hp2 NA18906.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp2 NA18951.hp1 NA18964.hp2 NA18978.hp1 NA18979.hp1 NA18998.hp1 NA19001.hp1 NA19002.hp2 NA19005.hp1 NA19009.hp1 NA19030.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp2 NA19081.hp1 NA19082.hp1 NA19085.hp1 NA20129.hp2 NA20300.hp2 NA20905.hp1	intron_variant	MODIFIER	c.-139+858A>G c.-139+858A>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180223
chrX:153180237	CG CG	C C	1	a0005c0005t0007g0022 a0005c0005t0007g0022	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-139+876delG c.-139+876delG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153180237
chrX:153180253	A A	G G	2	a0001c0001t0001g0013 a0001c0001t0001g0028 a0001c0001t0001g0013 a0001c0001t0001g0028	3	HG03540.hp2 NA19030.hp2 NA20300.hp1 HG03540.hp2 NA19030.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-139+888A>G c.-139+888A>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180253
chrX:153180278	AGG AGG	A A	1	a0003c0003t0003g0041 a0003c0003t0003g0041	1	NA18951.hp1 NA18951.hp1	intron_variant	MODIFIER	c.-139+914_-139+915d others(4): Show c.-139+914_-139+915delGG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180278
chrX:153180292	G G	A A	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.-139+927G>A c.-139+927G>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180292
chrX:153180322	G G	GA GA	1	a0005c0005t0007g0022 a0005c0005t0007g0022	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-139+959dupA c.-139+959dupA	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153180322
chrX:153180339	C C	T T	10	a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 others(7): Show a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 a0003c0003t0003g0036 a0003c0003t0003g0037 a0003c0003t0003g0038 a0003c0003t0003g0040 a0003c0003t0003g0041 a0003c0003t0010g0039 a0003c0003t0011g0003	46	HG00099.hp1 HG00438.hp2 HG00544.hp1 others(43): Show HG00099.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp2 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01346.hp1 HG01358.hp1 HG02155.hp1 HG02165.hp2 HG02738.hp1 HG03017.hp1 HG03195.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04199.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp2 NA18951.hp1 NA18964.hp2 NA18978.hp1 NA18979.hp1 NA18998.hp1 NA19001.hp1 NA19002.hp2 NA19005.hp1 NA19009.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp2 NA19081.hp1 NA19082.hp1 NA19085.hp1 NA20300.hp2 NA20905.hp1	intron_variant	MODIFIER	c.-139+974C>T c.-139+974C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180339
chrX:153180365	G G	A A	1	a0003c0003t0003g0036 a0003c0003t0003g0036	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-139+1000G>A c.-139+1000G>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180365
chrX:153180391	A A	AC AC	1	a0003c0004t0001g0033 a0003c0004t0001g0033	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.-139+1031dupC c.-139+1031dupC	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153180391
chrX:153180398	AC AC	A A	1	a0002c0002t0002g0016 a0002c0002t0002g0016	1	NA18957.hp2 NA18957.hp2	intron_variant	MODIFIER	c.-139+1038delC c.-139+1038delC	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153180398
chrX:153180410	ATC ATC	A A	1	a0003c0003t0003g0040 a0003c0003t0003g0040	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.-139+1047_-139+104 others(6): Show c.-139+1047_-139+1048delCT	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153180410
chrX:153180480	G G	A A	1	a0003c0003t0003g0037 a0003c0003t0003g0037	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.-139+1115G>A c.-139+1115G>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180480
chrX:153180506	AG AG	A A	1	a0005c0005t0007g0022 a0005c0005t0007g0022	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-139+1145delG c.-139+1145delG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153180506
chrX:153180518	AG AG	A A	1	a0003c0003t0003g0038 a0003c0003t0003g0038	1	NA19001.hp1 NA19001.hp1	intron_variant	MODIFIER	c.-139+1156delG c.-139+1156delG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153180518
chrX:153180543	G G	GC GC	1	a0003c0003t0010g0039 a0003c0003t0010g0039	1	NA19072.hp1 NA19072.hp1	intron_variant	MODIFIER	c.-139+1181dupC c.-139+1181dupC	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153180543
chrX:153180594	C C	T T	1	a0001c0001t0001g0012 a0001c0001t0001g0012	2	HG02257.hp2 HG03225.hp1 HG02257.hp2 HG03225.hp1	intron_variant	MODIFIER	c.-139+1229C>T c.-139+1229C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180594
chrX:153180626	C C	T T	20	a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 others(17): Show a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 a0002c0002t0002g0017 a0002c0002t0002g0018 a0002c0002t0002g0019 a0002c0002t0002g0020 a0002c0002t0002g0021 a0002c0002t0012g0002 a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 a0003c0003t0003g0036 a0003c0003t0003g0037 a0003c0003t0003g0038 a0003c0003t0003g0040 a0003c0003t0003g0041 a0003c0003t0010g0039 a0003c0003t0011g0003 a0004c0006t0002g0015	141	HG00099.hp1 HG00408.hp2 HG00423.hp2 others(138): Show HG00099.hp1 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01358.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG02738.hp1 HG03017.hp1 HG03195.hp1 HG03195.hp2 HG03486.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18941.hp2 NA18945.hp1 NA18946.hp1 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18951.hp1 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18998.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19010.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19066.hp1 NA19072.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19085.hp1 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA20300.hp2 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-139+1261C>T c.-139+1261C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180626
chrX:153180667	G G	A A	27	a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 others(24): Show a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 a0002c0002t0002g0017 a0002c0002t0002g0018 a0002c0002t0002g0019 a0002c0002t0002g0020 a0002c0002t0002g0021 a0002c0002t0012g0002 a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 a0003c0003t0003g0036 a0003c0003t0003g0037 a0003c0003t0003g0038 a0003c0003t0003g0040 a0003c0003t0003g0041 a0003c0003t0010g0039 a0003c0003t0011g0003 a0003c0004t0001g0005 a0003c0004t0001g0033 a0003c0004t0001g0034 a0003c0004t0004g0006 a0003c0004t0004g0014 a0003c0004t0006g0006 a0003c0004t0013g0031 a0004c0006t0002g0015	165	HG00099.hp1 HG00408.hp2 HG00423.hp2 others(162): Show HG00099.hp1 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00733.hp1 HG00735.hp1 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01358.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02630.hp1 HG02738.hp1 HG02818.hp1 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02970.hp2 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03195.hp1 HG03195.hp2 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG06807.hp2 NA18747.hp1 NA18906.hp1 NA18941.hp2 NA18945.hp1 NA18946.hp1 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18951.hp1 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18998.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19010.hp1 NA19012.hp1 NA19030.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19066.hp1 NA19072.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19085.hp1 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-139+1302G>A c.-139+1302G>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180667
chrX:153180698	C C	A A	20	a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 others(17): Show a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 a0002c0002t0002g0017 a0002c0002t0002g0018 a0002c0002t0002g0019 a0002c0002t0002g0020 a0002c0002t0002g0021 a0002c0002t0012g0002 a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 a0003c0003t0003g0036 a0003c0003t0003g0037 a0003c0003t0003g0038 a0003c0003t0003g0040 a0003c0003t0003g0041 a0003c0003t0010g0039 a0003c0003t0011g0003 a0004c0006t0002g0015	141	HG00099.hp1 HG00408.hp2 HG00423.hp2 others(138): Show HG00099.hp1 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01358.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG02738.hp1 HG03017.hp1 HG03195.hp1 HG03195.hp2 HG03486.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18941.hp2 NA18945.hp1 NA18946.hp1 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18951.hp1 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18998.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19010.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19066.hp1 NA19072.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19085.hp1 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA20300.hp2 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-139+1333C>A c.-139+1333C>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180698
chrX:153180706	G G	A A	1	a0001c0001t0005g0025 a0001c0001t0005g0025	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.-139+1341G>A c.-139+1341G>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180706
chrX:153180792	C C	T T	1	a0002c0002t0002g0020 a0002c0002t0002g0020	1	HG02155.hp2 HG02155.hp2	intron_variant	MODIFIER	c.-138-1385C>T c.-138-1385C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180792
chrX:153180908	A A	G G	3	a0003c0004t0001g0005 a0003c0004t0001g0033 a0003c0004t0001g0034 a0003c0004t0001g0005 a0003c0004t0001g0033 a0003c0004t0001g0034	13	HG00642.hp1 HG02258.hp1 HG02818.hp1 others(10): Show HG00642.hp1 HG02258.hp1 HG02818.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02970.hp2 HG03041.hp1 HG03516.hp2 HG06807.hp2 NA18906.hp1 NA19030.hp1 NA20129.hp2	intron_variant	MODIFIER	c.-138-1269A>G c.-138-1269A>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153180908
chrX:153180941	A A	AG AG	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA18991.hp1 NA18991.hp1	intron_variant	MODIFIER	c.-138-1233dupG c.-138-1233dupG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153180941
chrX:153181043	T T	TG TG	1	a0002c0002t0002g0016 a0002c0002t0002g0016	1	NA18957.hp2 NA18957.hp2	intron_variant	MODIFIER	c.-138-1128dupG c.-138-1128dupG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153181043
chrX:153181055	A A	T T	1	a0002c0002t0002g0019 a0002c0002t0002g0019	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-138-1122A>T c.-138-1122A>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181055
chrX:153181078	A A	AG AG	1	a0001c0001t0001g0026 a0001c0001t0001g0026	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.-138-1093dupG c.-138-1093dupG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153181078
chrX:153181078	AGGG AGGG	A A	11	a0001c0001t0001g0011 a0002c0002t0002g0002 a0002c0002t0002g0007 others(8): Show a0001c0001t0001g0011 a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 a0002c0002t0002g0017 a0002c0002t0002g0018 a0002c0002t0002g0019 a0002c0002t0002g0020 a0002c0002t0002g0021 a0002c0002t0012g0002 a0004c0006t0002g0015	97	HG00408.hp2 HG00423.hp2 HG00438.hp1 others(94): Show HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG01257.hp2 HG01258.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp2 HG02165.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG03195.hp2 HG03486.hp1 HG03540.hp1 HG03704.hp1 HG04184.hp2 HG04204.hp1 NA18747.hp1 NA18941.hp2 NA18947.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18954.hp2 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19002.hp1 NA19006.hp1 NA19010.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19065.hp1 NA19067.hp1 NA19074.hp2 NA19075.hp1 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-138-1095_-138-109 others(7): Show c.-138-1095_-138-1093delGGG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153181078
chrX:153181084	G G	C C	1	a0002c0002t0002g0017 a0002c0002t0002g0017	1	HG03540.hp1 HG03540.hp1	intron_variant	MODIFIER	c.-138-1093G>C c.-138-1093G>C	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181084
chrX:153181121	G G	T T	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG03540.hp2 HG03540.hp2	intron_variant	MODIFIER	c.-138-1056G>T c.-138-1056G>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181121
chrX:153181170	G G	A A	1	a0003c0003t0003g0010 a0003c0003t0003g0010	3	HG00099.hp1 HG01106.hp1 HG01358.hp1 HG00099.hp1 HG01106.hp1 HG01358.hp1	intron_variant	MODIFIER	c.-138-1007G>A c.-138-1007G>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181170
chrX:153181196	T T	C C	10	a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 others(7): Show a0002c0002t0002g0002 a0002c0002t0002g0007 a0002c0002t0002g0016 a0002c0002t0002g0017 a0002c0002t0002g0018 a0002c0002t0002g0019 a0002c0002t0002g0020 a0002c0002t0002g0021 a0002c0002t0012g0002 a0004c0006t0002g0015	95	HG00408.hp2 HG00423.hp2 HG00438.hp1 others(92): Show HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00597.hp1 HG00609.hp1 HG00639.hp2 HG00673.hp1 HG00733.hp1 HG01257.hp2 HG01258.hp1 HG01433.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02148.hp1 HG02155.hp2 HG02165.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG03195.hp2 HG03486.hp1 HG03540.hp1 HG03704.hp1 HG04184.hp2 HG04204.hp1 NA18747.hp1 NA18941.hp2 NA18947.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp2 NA18953.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18961.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18981.hp2 NA18984.hp1 NA18986.hp1 NA18990.hp1 NA18991.hp2 NA18995.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp2 NA19002.hp1 NA19006.hp1 NA19010.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19065.hp1 NA19074.hp2 NA19075.hp1 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-138-981T>C c.-138-981T>C	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181196
chrX:153181456	G G	A A	1	a0001c0001t0001g0009 a0001c0001t0001g0009	3	HG02922.hp2 HG02976.hp2 HG03579.hp1 HG02922.hp2 HG02976.hp2 HG03579.hp1	intron_variant	MODIFIER	c.-138-721G>A c.-138-721G>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181456
chrX:153181477	C C	T T	1	a0003c0004t0001g0034 a0003c0004t0001g0034	1	NA18906.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-138-700C>T c.-138-700C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181477
chrX:153181478	C C	T T	1	a0003c0003t0003g0036 a0003c0003t0003g0036	1	HG01099.hp1 HG01099.hp1	intron_variant	MODIFIER	c.-138-699C>T c.-138-699C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181478
chrX:153181506	A A	G G	6	a0001c0001t0001g0004 a0001c0001t0001g0011 a0001c0001t0005g0004 others(3): Show a0001c0001t0001g0004 a0001c0001t0001g0011 a0001c0001t0005g0004 a0001c0001t0005g0025 a0001c0001t0005g0029 a0005c0005t0007g0022	23	HG00621.hp1 HG00735.hp2 HG01257.hp1 others(20): Show HG00621.hp1 HG00735.hp2 HG01257.hp1 HG02132.hp1 NA18940.hp1 NA18941.hp1 NA18943.hp1 NA18946.hp2 NA18950.hp1 NA18954.hp1 NA18954.hp2 NA18968.hp2 NA18980.hp1 NA18988.hp1 NA18994.hp1 NA19003.hp1 NA19007.hp1 NA19010.hp2 NA19055.hp1 NA19057.hp2 NA19058.hp1 NA19067.hp1 NA19083.hp1	intron_variant	MODIFIER	c.-138-671A>G c.-138-671A>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181506
chrX:153181813	A A	AG AG	1	a0003c0003t0003g0040 a0003c0003t0003g0040	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.-138-359dupG c.-138-359dupG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153181813
chrX:153181815	G G	C C	3	a0003c0004t0001g0005 a0003c0004t0001g0033 a0003c0004t0001g0034 a0003c0004t0001g0005 a0003c0004t0001g0033 a0003c0004t0001g0034	13	HG00642.hp1 HG02258.hp1 HG02818.hp1 others(10): Show HG00642.hp1 HG02258.hp1 HG02818.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02970.hp2 HG03041.hp1 HG03516.hp2 HG06807.hp2 NA18906.hp1 NA19030.hp1 NA20129.hp2	intron_variant	MODIFIER	c.-138-362G>C c.-138-362G>C	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181815
chrX:153181857	GC GC	G G	1	a0004c0006t0002g0015 a0004c0006t0002g0015	1	NA19057.hp1 NA19057.hp1	intron_variant	MODIFIER	c.-138-317delC c.-138-317delC	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153181857
chrX:153181919	C C	T T	1	a0002c0002t0002g0018 a0002c0002t0002g0018	1	NA18966.hp1 NA18966.hp1	intron_variant	MODIFIER	c.-138-258C>T c.-138-258C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181919
chrX:153181976	A A	G G	2	a0002c0002t0002g0007 a0002c0002t0002g0019 a0002c0002t0002g0007 a0002c0002t0002g0019	8	HG01891.hp2 HG01934.hp1 HG02109.hp1 others(5): Show HG01891.hp2 HG01934.hp1 HG02109.hp1 HG02280.hp2 HG02630.hp1 HG03195.hp2 NA20129.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-138-201A>G c.-138-201A>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153181976
chrX:153182008	A A	AG AG	1	a0003c0003t0003g0040 a0003c0003t0003g0040	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.-138-166dupG c.-138-166dupG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153182008
chrX:153182056	C C	A A	1	a0001c0001t0001g0011 a0001c0001t0001g0011	2	NA18954.hp2 NA19067.hp1 NA18954.hp2 NA19067.hp1	intron_variant	MODIFIER	c.-138-121C>A c.-138-121C>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153182056
chrX:153182075	A A	AG AG	1	a0005c0005t0007g0022 a0005c0005t0007g0022	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-138-100dupG c.-138-100dupG	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2	INFO_REALIGN_3_PRIME	chrX	153182075
chrX:153182126	G G	A A	10	a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 others(7): Show a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 a0003c0003t0003g0036 a0003c0003t0003g0037 a0003c0003t0003g0038 a0003c0003t0003g0040 a0003c0003t0003g0041 a0003c0003t0010g0039 a0003c0003t0011g0003	46	HG00099.hp1 HG00438.hp2 HG00544.hp1 others(43): Show HG00099.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp2 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01346.hp1 HG01358.hp1 HG02155.hp1 HG02165.hp2 HG02738.hp1 HG03017.hp1 HG03195.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04199.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp2 NA18951.hp1 NA18964.hp2 NA18978.hp1 NA18979.hp1 NA18998.hp1 NA19001.hp1 NA19002.hp2 NA19005.hp1 NA19009.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp2 NA19081.hp1 NA19082.hp1 NA19085.hp1 NA20300.hp2 NA20905.hp1	intron_variant	MODIFIER	c.-138-51G>A c.-138-51G>A	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	1/2		chrX	153182126
chrX:153182312	C C	G G	10	a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 others(7): Show a0003c0003t0003g0003 a0003c0003t0003g0008 a0003c0003t0003g0010 a0003c0003t0003g0036 a0003c0003t0003g0037 a0003c0003t0003g0038 a0003c0003t0003g0040 a0003c0003t0003g0041 a0003c0003t0010g0039 a0003c0003t0011g0003	46	HG00099.hp1 HG00438.hp2 HG00544.hp1 others(43): Show HG00099.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp2 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01346.hp1 HG01358.hp1 HG02155.hp1 HG02165.hp2 HG02738.hp1 HG03017.hp1 HG03195.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 HG04199.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp2 NA18951.hp1 NA18964.hp2 NA18978.hp1 NA18979.hp1 NA18998.hp1 NA19001.hp1 NA19002.hp2 NA19005.hp1 NA19009.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19072.hp1 NA19076.hp1 NA19077.hp2 NA19081.hp1 NA19082.hp1 NA19085.hp1 NA20300.hp2 NA20905.hp1	intron_variant	MODIFIER	c.-65-13C>G c.-65-13C>G	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	2/2		chrX	153182312
chrX:153182317	C C	T T	1	a0003c0004t0004g0014 a0003c0004t0004g0014	2	HG01243.hp1 HG03098.hp1 HG01243.hp1 HG03098.hp1	splice_region_variant&intron_variant	LOW	c.-65-8C>T c.-65-8C>T	MAGEA1	ENSG00000198681.7	transcript	ENST00000356661.7	protein_coding	2/2		chrX	153182317

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🧬 JoGo Online Haplotype Explorer MAGEA1_chrX_153174284_153188880

JoGo Local Haplotype Explorer (on iGV) MAGEA1_chrX_153174284_153188880

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 5)

CCoding Level Haplotype Info (Total: 6)

TTranscript Level Haplotype Info (Total: 13)

GGenebody Level Haplotype Info (Total: 41)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 6)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 15)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 47)

Haplotype Details by Sample (Haploid Level) (Total: 343)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 4)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 15)

GGenebody Level Haplotype Variants (Intron) (Total: 62)

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Annotation (Repeats)

Annotation (SNP Array)