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geneid	253175
ensemblid	ENSG00000172352.5
hgncid	23920
symbol	CDY1B
name	chromodomain Y-linked 1B
refseq_nuc	NM_001003894.2
refseq_prot	NP_001003894.1
ensembl_nuc	ENST00000382407.1
ensembl_prot	ENSP00000371844.1
mane_status	MANE Select
chr	chrY
start	24045793
end	24048019
strand	-
ver	v1.2
region	chrY:24045793-24048019
region5000	chrY:24040793-24053019
regionname0	CDY1B_chrY_24045793_24048019
regionname5000	CDY1B_chrY_24040793_24053019

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	540	50	0	14	25	3	8	20	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
a0002	0/0	540	1	0	1	0	0	0	0	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1623	49	13	25	3	8	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
c0002	0/0	1623	1	1	0	0	0	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
c0003	0/0	1623	1	1	0	0	0	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	605	47	15	22	3	7	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
t0002	0/0	605	3	0	2	0	1	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
t0003	0/0	611	1	0	1	0	0	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	0/0	51	0	15	25	3	8	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1623	49	13	25	3	8	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
a0001c0002	0/0	1623	1	1	0	0	0	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
a0002c0003	0/0	1623	1	1	0	0	0	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019

acthapid	grch38 chm13v2	tlen	total	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	2227	45	13	22	3	7	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
a0001c0001t0002	0/0	2227	3	0	2	0	1	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
a0001c0001t0003	0/0	2233	1	0	1	0	0	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
a0001c0002t0001	0/0	2227	1	1	0	0	0	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019
a0002c0003t0001	0/0	2227	1	1	0	0	0	CDY1B_chrY_24040793_24053019	CDY1B	copy fasta	chrY	24040793	24053019

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0000	0/0	45	13	22	3	7	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
a0001c0001t0002g0000	0/0	3	0	2	0	1	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
a0001c0001t0003g0000	0/0	1	0	1	0	0	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
a0001c0002t0001g0000	0/0	1	1	0	0	0	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
a0002c0003t0001g0000	0/0	1	1	0	0	0	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00280	hp1	a0001	c0001	t0001	g0000	EUR	FIN	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG00609	hp1	a0001	c0001	t0001	g0000	EAS	CHS	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG00621	hp1	a0001	c0001	t0001	g0000	EAS	CHS	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG00642	hp1	a0001	c0001	t0001	g0000	AMR	PUR	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG00673	hp1	a0001	c0001	t0001	g0000	EAS	CHS	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG00738	hp1	a0001	c0001	t0001	g0000	AMR	PUR	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01069	hp1	a0001	c0001	t0001	g0000	AMR	PUR	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01109	hp1	a0001	c0001	t0001	g0000	AMR	PUR	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01167	hp1	a0001	c0001	t0001	g0000	AMR	PUR	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01243	hp1	a0001	c0001	t0001	g0000	AMR	PUR	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01255	hp1	a0001	c0001	t0001	g0000	AMR	CLM	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01256	hp1	a0001	c0001	t0001	g0000	AMR	CLM	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01258	hp1	a0001	c0001	t0001	g0000	AMR	CLM	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01358	hp1	a0001	c0001	t0001	g0000	AMR	CLM	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01433	hp1	a0001	c0001	t0001	g0000	AMR	CLM	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01515	hp1	a0001	c0001	t0001	g0000	EUR	IBS	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01928	hp1	a0002	c0003	t0001	g0000	AMR	PEL	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01934	hp1	a0001	c0001	t0001	g0000	AMR	PEL	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01943	hp1	a0001	c0001	t0001	g0000	AMR	PEL	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG01952	hp1	a0001	c0002	t0001	g0000	AMR	PEL	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG02083	hp1	a0001	c0001	t0001	g0000	EAS	KHV	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG02602	hp1	a0001	c0001	t0001	g0000	SAS	PJL	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG02738	hp1	a0001	c0001	t0001	g0000	SAS	PJL	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG03490	hp1	a0001	c0001	t0001	g0000	SAS	PJL	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG03492	hp1	a0001	c0001	t0001	g0000	SAS	PJL	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG03654	hp1	a0001	c0001	t0001	g0000	SAS	PJL	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG03710	hp1	a0001	c0001	t0002	g0000	SAS	PJL	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
HG04204	hp1	a0001	c0001	t0001	g0000	SAS	STU	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18747	hp1	a0001	c0001	t0001	g0000	EAS	CHB	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18945	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18953	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18959	hp1	a0001	c0001	t0002	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18962	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18965	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18971	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18977	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18982	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18984	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18985	hp1	a0001	c0001	t0003	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18986	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA18989	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA19006	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA19009	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA19055	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA19062	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA19067	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA19075	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA19082	hp1	a0001	c0001	t0002	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA19083	hp1	a0001	c0001	t0001	g0000	EAS	JPT	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA20752	hp1	a0001	c0001	t0001	g0000	EUR	TSI	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019
NA20905	hp1	a0001	c0001	t0001	g0000	SAS	GIH	CDY1B_chrY_24040793_24053019	CDY1B	chrY	24040793	24053019

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:24046331	G G	A A	1	a0002 a0002	1	HG01928.hp1 HG01928.hp1	missense_variant	MODERATE	c.1358C>T c.1358C>T	p.Ala453Val p.Ala453Val	CDY1B	ENSG00000172352.5	transcript	ENST00000382407.1	protein_coding	1/1	1689/2227	1358/1623	453/540			chrY	24046331

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:24046516	C C	G G	1	a0001c0002 a0001c0002	1	HG01952.hp1 HG01952.hp1	synonymous_variant	LOW	c.1173G>C c.1173G>C	p.Ala391Ala p.Ala391Ala	CDY1B	ENSG00000172352.5	transcript	ENST00000382407.1	protein_coding	1/1	1504/2227	1173/1623	391/540			chrY	24046516

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:24045891	T T	TGCTTAA TGCTTAA	1	a0001c0001t0003 a0001c0001t0003	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.169_174dupTTAAGC c.169_174dupTTAAGC		CDY1B	ENSG00000172352.5	transcript	ENST00000382407.1	protein_coding	1/1				174		chrY	24045891
chrY:24047772	G G	A A	1	a0001c0001t0002 a0001c0001t0002	3	HG03710.hp1 NA18959.hp1 NA19082.hp1 HG03710.hp1 NA18959.hp1 NA19082.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-84C>T c.-84C>T		CDY1B	ENSG00000172352.5	transcript	ENST00000382407.1	protein_coding	1/1						chrY	24047772

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

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🧬 JoGo Online Haplotype Explorer CDY1B_chrY_24040793_24053019

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ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 2)

CCoding Level Haplotype Info (Total: 3)

TTranscript Level Haplotype Info (Total: 3)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 3)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 5)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 5)

Haplotype Details by Sample (Haploid Level) (Total: 51)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 1)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 2)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

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Annotation (Repeats)

Annotation (SNP Array)