Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	3975
ensemblid	ENSG00000273706.5
hgncid	6593
symbol	LHX1
name	LIM homeobox 1
refseq_nuc	NM_005568.5
refseq_prot	NP_005559.2
ensembl_nuc	ENST00000614239.1
ensembl_prot	ENSP00000477829.1
mane_status	MANE Select
chr	chr17
start	36937475
end	36944612
strand	+
ver	v1.2
region	chr17:36937475-36944612
region5000	chr17:36932475-36949612
regionname0	LHX1_chr17_36937475_36944612
regionname5000	LHX1_chr17_36932475_36949612

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/1	406	382	84	70	167	12	48	125	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0002	0/0	406	2	2	0	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0003	0/0	67	1	0	0	1	0	0	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/1	1221	370	74	69	166	12	48	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
c0002	0/0	1221	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
c0003	0/0	1221	4	3	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
c0004	0/0	1221	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
c0005	0/0	1221	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
c0006	0/0	1221	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
c0007	0/0	1221	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
c0008	0/0	1207	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/1	2208	166	11	40	80	5	29	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0002	0/0	2204	31	2	7	20	0	2	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0003	0/0	2207	21	0	1	17	2	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0004	0/0	2207	17	2	7	7	0	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0005	0/0	2209	13	0	1	8	0	4	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0006	0/0	2205	13	4	1	2	0	6	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0007	0/0	2208	8	0	0	7	0	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0008	0/0	2209	7	1	1	4	0	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0009	0/0	2199	7	7	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0010	0/0	2208	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0011	0/0	2207	5	0	0	3	2	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0012	0/0	2205	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0013	0/0	2210	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0014	0/0	2206	5	0	2	2	1	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0015	0/0	2202	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0016	0/0	2201	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0017	0/0	2203	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0018	0/0	2200	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0019	0/0	2208	3	0	0	3	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0020	0/0	2204	3	0	1	2	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0021	0/0	2203	3	3	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0022	0/0	2202	3	2	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0023	0/0	2203	2	1	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0024	0/0	2203	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0025	0/0	2208	2	0	0	2	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0026	0/0	2209	2	0	1	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0027	0/0	2208	2	1	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0028	0/0	2202	2	0	0	0	0	2	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0029	0/0	2206	2	1	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0030	0/0	2202	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0031	0/0	2198	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0032	0/0	2206	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0033	0/0	2208	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0034	0/0	2208	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0035	0/0	2203	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0036	0/0	2208	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0037	0/0	2205	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0038	0/0	2208	1	0	0	0	0	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0039	0/0	2209	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0040	0/0	2205	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0041	0/0	2208	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0042	0/0	2205	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0043	0/0	2206	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0044	0/0	2205	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0045	0/0	2203	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0046	0/0	2203	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0047	0/0	2209	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0048	0/0	2207	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0049	0/0	2206	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0050	0/0	2205	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0051	0/0	2204	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0052	0/0	2209	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0053	0/0	2206	1	0	0	0	1	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0054	0/0	2204	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0055	0/0	2203	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0056	0/0	2202	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0057	0/0	2202	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0058	0/0	2203	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0059	0/0	2207	1	0	0	0	1	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0060	0/0	2205	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
t0061	0/0	2205	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/1	237	16	52	123	10	35	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0002	0/0	48	8	9	27	0	4	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0003	0/0	18	5	2	4	1	6	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0004	0/0	12	12	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0005	0/0	8	7	0	0	0	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0006	0/0	7	7	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0007	0/0	6	6	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0008	0/0	6	0	1	5	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0009	0/0	6	0	0	6	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0010	0/0	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0011	0/0	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0012	0/0	4	3	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0013	0/0	3	2	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0014	0/0	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0015	0/0	2	1	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0016	0/0	2	0	2	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0017	0/0	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0018	0/0	1	0	0	0	0	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0019	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0020	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0021	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0022	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0023	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0024	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0025	0/0	1	0	0	0	0	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0026	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0027	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0028	0/0	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0029	0/0	1	0	0	0	1	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
g0030	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/1	1221	370	74	69	166	12	48	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0002	0/0	1221	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0003	0/0	1221	4	3	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0005	0/0	1221	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0006	0/0	1221	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0007	0/0	1221	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0002c0004	0/0	1221	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0003c0008	0/0	1207	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/1	3428	165	11	40	79	5	29	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0002	0/0	3424	30	2	7	19	0	2	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0003	0/0	3427	21	0	1	17	2	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0004	0/0	3427	16	1	7	7	0	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0005	0/0	3429	13	0	1	8	0	4	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0006	0/0	3425	13	4	1	2	0	6	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0007	0/0	3428	8	0	0	7	0	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0008	0/0	3429	6	0	1	4	0	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0009	0/0	3419	7	7	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0010	0/0	3428	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0011	0/0	3427	5	0	0	3	2	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0012	0/0	3425	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0013	0/0	3430	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0014	0/0	3426	5	0	2	2	1	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0015	0/0	3422	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0016	0/0	3421	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0018	0/0	3420	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0019	0/0	3428	3	0	0	3	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0020	0/0	3424	3	0	1	2	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0021	0/0	3423	3	3	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0022	0/0	3422	3	2	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0023	0/0	3423	2	1	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0024	0/0	3423	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0025	0/0	3428	2	0	0	2	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0026	0/0	3429	2	0	1	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0027	0/0	3428	2	1	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0028	0/0	3422	2	0	0	0	0	2	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0029	0/0	3426	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0030	0/0	3422	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0031	0/0	3418	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0033	0/0	3428	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0034	0/0	3428	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0035	0/0	3423	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0036	0/0	3428	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0037	0/0	3425	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0038	0/0	3428	1	0	0	0	0	1	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0039	0/0	3429	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0040	0/0	3425	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0041	0/0	3428	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0042	0/0	3425	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0043	0/0	3426	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0044	0/0	3425	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0045	0/0	3423	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0046	0/0	3423	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0047	0/0	3429	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0048	0/0	3427	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0049	0/0	3426	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0051	0/0	3424	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0052	0/0	3429	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0053	0/0	3426	1	0	0	0	1	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0054	0/0	3424	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0055	0/0	3423	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0057	0/0	3422	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0058	0/0	3423	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0001t0059	0/0	3427	1	0	0	0	1	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0002t0017	0/0	3423	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0002t0056	0/0	3422	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0003t0032	0/0	3426	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0003t0060	0/0	3425	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0003t0061	0/0	3425	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0005t0029	0/0	3426	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0006t0001	0/0	3428	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0001c0007t0050	0/0	3425	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0002c0004t0004	0/0	3427	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0002c0004t0008	0/0	3429	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612
a0003c0008t0002	0/0	3410	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	copy fasta	chr17	36932475	36949612

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/1	151	7	37	75	5	26	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0001g0005	0/0	1	0	0	0	0	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0001g0008	0/0	4	0	1	3	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0001g0011	0/0	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0001g0016	0/0	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0001g0018	0/0	1	0	0	0	0	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0001g0025	0/0	1	0	0	0	0	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0001g0027	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0001g0028	0/0	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0002g0002	0/0	30	2	7	19	0	2	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0003g0001	0/0	21	0	1	17	2	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0004g0001	0/0	14	1	7	5	0	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0004g0008	0/0	2	0	0	2	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0005g0001	0/0	12	0	1	7	0	4	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0005g0009	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0006g0003	0/0	11	2	1	2	0	6	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0006g0013	0/0	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0007g0001	0/0	3	0	0	2	0	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0007g0009	0/0	4	0	0	4	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0007g0019	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0008g0001	0/0	6	0	1	4	0	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0009g0004	0/0	6	6	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0009g0026	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0010g0001	0/0	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0011g0001	0/0	5	0	0	3	2	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0012g0002	0/0	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0013g0005	0/0	5	5	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0014g0003	0/0	3	0	1	2	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0014g0013	0/0	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0014g0029	0/0	1	0	0	0	1	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0015g0010	0/0	3	3	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0015g0021	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0016g0010	0/0	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0016g0014	0/0	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0018g0004	0/0	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0019g0001	0/0	3	0	0	3	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0020g0002	0/0	3	0	1	2	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0021g0006	0/0	3	3	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0022g0002	0/0	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0022g0006	0/0	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0023g0015	0/0	2	1	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0024g0017	0/0	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0025g0001	0/0	2	0	0	2	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0026g0001	0/0	2	0	1	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0027g0001	0/0	2	1	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0028g0002	0/0	2	0	0	0	0	2	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0029g0009	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0030g0006	0/0	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0031g0004	0/0	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0033g0001	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0034g0001	0/0	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0035g0023	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0036g0001	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0037g0003	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0038g0001	0/0	1	0	0	0	0	1	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0039g0001	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0040g0002	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0041g0001	0/0	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0042g0030	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0043g0001	0/0	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0044g0002	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0045g0002	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0046g0002	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0047g0005	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0048g0001	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0049g0016	0/0	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0051g0002	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0052g0005	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0053g0003	0/0	1	0	0	0	1	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0054g0003	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0055g0003	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0057g0020	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0058g0002	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0001t0059g0001	0/0	1	0	0	0	1	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0002t0017g0007	0/0	4	4	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0002t0056g0007	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0003t0032g0012	0/0	2	2	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0003t0060g0012	0/0	1	0	1	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0003t0061g0012	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0005t0029g0007	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0006t0001g0001	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0001c0007t0050g0022	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0002c0004t0004g0001	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0002c0004t0008g0024	0/0	1	1	0	0	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
a0003c0008t0002g0002	0/0	1	0	0	1	0	0	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0053	g0003	EUR	GBR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00140	hp1	a0001	c0001	t0003	g0001	EUR	GBR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00140	hp2	a0001	c0001	t0001	g0001	EUR	GBR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00280	hp1	a0001	c0001	t0059	g0001	EUR	FIN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00280	hp2	a0001	c0001	t0001	g0001	EUR	FIN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00323	hp1	a0001	c0001	t0003	g0001	EUR	FIN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00323	hp2	a0001	c0001	t0014	g0029	EUR	FIN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00408	hp1	a0001	c0001	t0005	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00408	hp2	a0001	c0001	t0005	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00423	hp1	a0001	c0001	t0002	g0002	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00423	hp2	a0001	c0001	t0002	g0002	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00438	hp1	a0001	c0001	t0002	g0002	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00597	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00609	hp2	a0001	c0001	t0001	g0008	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00621	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00639	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00642	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00673	hp1	a0001	c0001	t0003	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00673	hp2	a0001	c0001	t0003	g0001	EAS	CHS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00735	hp1	a0001	c0001	t0034	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00735	hp2	a0001	c0001	t0020	g0002	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00738	hp1	a0001	c0001	t0001	g0008	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00738	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01070	hp1	a0001	c0001	t0043	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01070	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01074	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01106	hp1	a0001	c0001	t0049	g0016	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01106	hp2	a0001	c0001	t0014	g0013	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01109	hp1	a0001	c0003	t0060	g0012	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01109	hp2	a0001	c0001	t0004	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01167	hp1	a0001	c0001	t0002	g0002	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01167	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01168	hp1	a0001	c0001	t0004	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01168	hp2	a0001	c0001	t0004	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01169	hp1	a0001	c0001	t0004	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01169	hp2	a0001	c0001	t0002	g0002	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01192	hp1	a0001	c0001	t0027	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01192	hp2	a0001	c0001	t0023	g0015	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01243	hp1	a0001	c0001	t0005	g0001	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01243	hp2	a0001	c0001	t0002	g0002	AMR	PUR	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01255	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01256	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01257	hp2	a0001	c0001	t0004	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01261	hp1	a0001	c0001	t0008	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01261	hp2	a0001	c0001	t0002	g0002	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01346	hp1	a0001	c0001	t0003	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01346	hp2	a0001	c0001	t0002	g0002	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01358	hp1	a0001	c0001	t0002	g0002	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01358	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01433	hp1	a0001	c0001	t0006	g0003	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01433	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01496	hp1	a0001	c0001	t0004	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01496	hp2	a0001	c0001	t0022	g0002	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01516	hp1	a0001	c0001	t0011	g0001	EUR	IBS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01516	hp2	a0001	c0001	t0011	g0001	EUR	IBS	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01884	hp1	a0001	c0001	t0001	g0011	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01884	hp2	a0001	c0001	t0012	g0002	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01891	hp1	a0001	c0001	t0022	g0006	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01891	hp2	a0001	c0001	t0009	g0004	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01952	hp2	a0001	c0001	t0026	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01978	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01978	hp2	a0001	c0001	t0001	g0028	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02004	hp1	a0001	c0001	t0004	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02004	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02015	hp1	a0001	c0001	t0001	g0027	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02015	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02027	hp1	a0001	c0001	t0005	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02027	hp2	a0001	c0001	t0005	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02055	hp1	a0001	c0001	t0013	g0005	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02055	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02056	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02083	hp1	a0001	c0001	t0005	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02083	hp2	a0001	c0001	t0007	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02132	hp1	a0001	c0001	t0003	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02132	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02135	hp1	a0001	c0006	t0001	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02135	hp2	a0001	c0001	t0014	g0003	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02148	hp1	a0001	c0001	t0001	g0016	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02155	hp1	a0001	c0001	t0001	g0001	EAS	CDX	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02257	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02257	hp2	a0001	c0001	t0001	g0011	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02258	hp1	a0001	c0001	t0031	g0004	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02258	hp2	a0001	c0001	t0031	g0004	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02273	hp1	a0001	c0001	t0041	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02280	hp1	a0001	c0001	t0010	g0001	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02280	hp2	a0001	c0001	t0021	g0006	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02293	hp2	a0001	c0001	t0014	g0003	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02300	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02300	hp2	a0001	c0001	t0002	g0002	AMR	PEL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02451	hp1	a0001	c0001	t0021	g0006	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02451	hp2	a0002	c0004	t0004	g0001	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02523	hp1	a0001	c0001	t0003	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02523	hp2	a0001	c0001	t0005	g0001	EAS	KHV	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02602	hp2	a0001	c0001	t0008	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02615	hp1	a0001	c0001	t0012	g0002	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02615	hp2	a0001	c0001	t0010	g0001	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02622	hp1	a0001	c0001	t0002	g0002	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02622	hp2	a0001	c0001	t0057	g0020	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02630	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02630	hp2	a0001	c0001	t0052	g0005	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02647	hp1	a0001	c0005	t0029	g0007	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02647	hp2	a0001	c0001	t0055	g0003	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02683	hp2	a0001	c0001	t0006	g0003	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02698	hp1	a0001	c0001	t0005	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02698	hp2	a0001	c0001	t0007	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02723	hp1	a0001	c0001	t0037	g0003	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02723	hp2	a0001	c0002	t0017	g0007	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02735	hp2	a0001	c0001	t0006	g0003	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02738	hp2	a0001	c0001	t0006	g0003	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02809	hp1	a0001	c0001	t0016	g0010	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02809	hp2	a0001	c0001	t0054	g0003	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02886	hp1	a0001	c0001	t0018	g0004	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02886	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02895	hp1	a0001	c0001	t0015	g0010	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02895	hp2	a0001	c0001	t0004	g0001	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02896	hp1	a0001	c0001	t0015	g0010	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02896	hp2	a0001	c0002	t0017	g0007	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02922	hp1	a0001	c0001	t0013	g0005	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02922	hp2	a0001	c0001	t0001	g0011	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02965	hp1	a0001	c0003	t0032	g0012	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02965	hp2	a0001	c0001	t0016	g0014	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02970	hp1	a0001	c0001	t0018	g0004	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02970	hp2	a0001	c0001	t0030	g0006	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02976	hp1	a0001	c0001	t0009	g0004	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03017	hp1	a0001	c0001	t0002	g0002	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03017	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03041	hp1	a0001	c0001	t0009	g0004	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03041	hp2	a0001	c0001	t0016	g0010	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03098	hp1	a0001	c0001	t0035	g0023	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03098	hp2	a0001	c0002	t0056	g0007	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03130	hp1	a0001	c0001	t0012	g0002	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03130	hp2	a0001	c0001	t0015	g0010	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03139	hp1	a0001	c0001	t0010	g0001	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03139	hp2	a0001	c0003	t0061	g0012	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03195	hp1	a0001	c0001	t0016	g0014	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03195	hp2	a0002	c0004	t0008	g0024	AFR	ESN	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03209	hp1	a0001	c0001	t0006	g0013	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03209	hp2	a0001	c0001	t0009	g0004	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03225	hp1	a0001	c0001	t0051	g0002	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03225	hp2	a0001	c0003	t0032	g0012	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03239	hp1	a0001	c0001	t0006	g0003	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03453	hp1	a0001	c0001	t0047	g0005	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03453	hp2	a0001	c0001	t0015	g0021	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03486	hp1	a0001	c0001	t0009	g0004	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03486	hp2	a0001	c0001	t0009	g0004	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03490	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03491	hp2	a0001	c0001	t0028	g0002	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03492	hp1	a0001	c0001	t0028	g0002	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03492	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03540	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03540	hp2	a0001	c0001	t0024	g0017	AFR	GWD	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03579	hp1	a0001	c0001	t0012	g0002	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03579	hp2	a0001	c0002	t0017	g0007	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03654	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03669	hp2	a0001	c0001	t0006	g0003	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03688	hp2	a0001	c0001	t0001	g0001	SAS	STU	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03704	hp1	a0001	c0001	t0038	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03704	hp2	a0001	c0001	t0001	g0025	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03710	hp1	a0001	c0001	t0005	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03710	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03834	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03834	hp2	a0001	c0001	t0006	g0003	SAS	BEB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03927	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03927	hp2	a0001	c0001	t0002	g0002	SAS	BEB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03942	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG04115	hp1	a0001	c0001	t0001	g0005	SAS	STU	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG04115	hp2	a0001	c0001	t0003	g0001	SAS	STU	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG04199	hp1	a0001	c0001	t0004	g0001	SAS	STU	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG04199	hp2	a0001	c0001	t0005	g0001	SAS	STU	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG04204	hp2	a0001	c0001	t0001	g0001	SAS	STU	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG04228	hp2	a0001	c0001	t0001	g0018	SAS	STU	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18522	hp1	a0001	c0001	t0010	g0001	AFR	YRI	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18522	hp2	a0001	c0001	t0001	g0011	AFR	YRI	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18612	hp2	a0001	c0001	t0058	g0002	EAS	CHB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18747	hp2	a0001	c0001	t0003	g0001	EAS	CHB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18906	hp1	a0001	c0001	t0030	g0006	AFR	YRI	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18906	hp2	a0001	c0001	t0024	g0017	AFR	YRI	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18942	hp2	a0001	c0001	t0045	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18943	hp1	a0001	c0001	t0004	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18943	hp2	a0001	c0001	t0004	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18944	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18945	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18946	hp1	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18946	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18949	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18949	hp2	a0001	c0001	t0020	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18950	hp1	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18950	hp2	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18951	hp1	a0001	c0001	t0019	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18951	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18953	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18953	hp2	a0001	c0001	t0025	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18959	hp1	a0001	c0001	t0046	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18959	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18960	hp1	a0001	c0001	t0004	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18960	hp2	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18962	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18963	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18963	hp2	a0001	c0001	t0007	g0009	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18964	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18965	hp1	a0001	c0001	t0006	g0003	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18965	hp2	a0001	c0001	t0004	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18966	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18968	hp1	a0001	c0001	t0007	g0009	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18968	hp2	a0001	c0001	t0001	g0008	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18970	hp1	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18970	hp2	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18971	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18971	hp2	a0001	c0001	t0005	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18974	hp1	a0001	c0001	t0011	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18974	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18975	hp1	a0001	c0001	t0004	g0008	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18975	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18977	hp2	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18978	hp1	a0001	c0001	t0004	g0008	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18978	hp2	a0001	c0001	t0011	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18980	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18980	hp2	a0001	c0001	t0007	g0019	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18982	hp1	a0001	c0001	t0048	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18982	hp2	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18983	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18985	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18986	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18986	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18989	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18990	hp2	a0001	c0001	t0008	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18991	hp1	a0001	c0001	t0040	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18991	hp2	a0001	c0001	t0001	g0008	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18992	hp1	a0001	c0001	t0042	g0030	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18992	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18994	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18995	hp1	a0001	c0001	t0007	g0009	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18995	hp2	a0001	c0001	t0007	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18997	hp1	a0001	c0001	t0039	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18997	hp2	a0001	c0001	t0007	g0009	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19000	hp2	a0001	c0001	t0019	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19001	hp1	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19001	hp2	a0003	c0008	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19002	hp1	a0001	c0001	t0004	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19002	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19003	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19004	hp1	a0001	c0001	t0026	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19004	hp2	a0001	c0001	t0005	g0009	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19005	hp1	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19005	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19007	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19007	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19011	hp1	a0001	c0001	t0025	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19030	hp1	a0001	c0001	t0009	g0026	AFR	LWK	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19030	hp2	a0001	c0001	t0018	g0004	AFR	LWK	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19043	hp1	a0001	c0001	t0006	g0003	AFR	LWK	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19043	hp2	a0001	c0001	t0021	g0006	AFR	LWK	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19054	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19054	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19055	hp1	a0001	c0001	t0011	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19055	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19056	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19057	hp1	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19057	hp2	a0001	c0001	t0029	g0009	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19060	hp2	a0001	c0001	t0019	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19065	hp2	a0001	c0001	t0014	g0003	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19067	hp2	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19068	hp1	a0001	c0001	t0003	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19068	hp2	a0001	c0001	t0006	g0003	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19079	hp2	a0001	c0001	t0036	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19080	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19080	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19082	hp1	a0001	c0001	t0044	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19082	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19083	hp1	a0001	c0001	t0008	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19083	hp2	a0001	c0001	t0008	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19085	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19085	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19087	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19087	hp2	a0001	c0001	t0020	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19088	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19090	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19240	hp1	a0001	c0001	t0010	g0001	AFR	YRI	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA19240	hp2	a0001	c0001	t0013	g0005	AFR	YRI	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA20129	hp1	a0001	c0001	t0027	g0001	AFR	ASW	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA20129	hp2	a0001	c0001	t0002	g0002	AFR	ASW	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA20805	hp2	a0001	c0001	t0001	g0001	EUR	TSI	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA20905	hp2	a0001	c0001	t0005	g0001	SAS	GIH	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01123	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02109	hp1	a0001	c0001	t0033	g0001	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02109	hp2	a0001	c0001	t0006	g0013	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02486	hp1	a0001	c0002	t0017	g0007	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02486	hp2	a0001	c0001	t0023	g0015	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02559	hp1	a0001	c0001	t0022	g0006	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG02559	hp2	a0001	c0001	t0012	g0002	AFR	ACB	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03471	hp1	a0001	c0001	t0018	g0004	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG03471	hp2	a0001	c0001	t0013	g0005	AFR	MSL	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG06807	hp1	a0001	c0001	t0013	g0005	AFR	USA	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
HG06807	hp2	a0001	c0001	t0006	g0003	AFR	USA	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18955	hp1	a0001	c0001	t0002	g0002	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA18955	hp2	a0001	c0001	t0008	g0001	EAS	JPT	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA20300	hp1	a0001	c0007	t0050	g0022	AFR	USA	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
NA20300	hp2	a0001	c0001	t0001	g0001	AFR	USA	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	LHX1_chr17_36932475_36949612	LHX1	chr17	36932475	36949612

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr17:36938318	AAGTGCTT others(7): Show AAGTGCTTCTCCAGG	A A	1	a0003 a0003	1	NA19001.hp2 NA19001.hp2	frameshift_variant	HIGH	c.122_135delAGTGCTTC others(6): Show c.122_135delAGTGCTTCTCCAGG	p.Lys41fs p.Lys41fs	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/5	845/3425	122/1221	41/406			chr17	36938318
chr17:36940628	C C	A A	1	a0002 a0002	2	HG02451.hp2 HG03195.hp2 HG02451.hp2 HG03195.hp2	missense_variant	MODERATE	c.416C>A c.416C>A	p.Pro139His p.Pro139His	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/5	1139/3425	416/1221	139/406			chr17	36940628

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr17:36938366	C C	A A	1	a0001c0003 a0001c0003	4	HG01109.hp1 HG02965.hp1 HG03139.hp2 others(1): Show HG01109.hp1 HG02965.hp1 HG03139.hp2 HG03225.hp2	splice_region_variant&synonymous_variant	LOW	c.169C>A c.169C>A	p.Arg57Arg p.Arg57Arg	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/5	892/3425	169/1221	57/406	chr17	36938366
chr17:36940617	G G	A A	1	a0001c0005 a0001c0005	1	HG02647.hp1 HG02647.hp1	synonymous_variant	LOW	c.405G>A c.405G>A	p.Thr135Thr p.Thr135Thr	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/5	1128/3425	405/1221	135/406	chr17	36940617
chr17:36942340	C C	A A	1	a0001c0006 a0001c0006	1	HG02135.hp1 HG02135.hp1	synonymous_variant	LOW	c.816C>A c.816C>A	p.Pro272Pro p.Pro272Pro	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	4/5	1539/3425	816/1221	272/406	chr17	36942340
chr17:36942855	G G	A A	1	a0001c0007 a0001c0007	1	NA20300.hp1 NA20300.hp1	synonymous_variant	LOW	c.945G>A c.945G>A	p.Pro315Pro p.Pro315Pro	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1668/3425	945/1221	315/406	chr17	36942855
chr17:36943008	C C	T T	2	a0001c0002 a0001c0005 a0001c0002 a0001c0005	6	HG02486.hp1 HG02647.hp1 HG02723.hp2 others(3): Show HG02486.hp1 HG02647.hp1 HG02723.hp2 HG02896.hp2 HG03098.hp2 HG03579.hp2	synonymous_variant	LOW	c.1098C>T c.1098C>T	p.His366His p.His366His	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1821/3425	1098/1221	366/406	chr17	36943008

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chr17:36937933	G G	A A	3	a0001c0001t0023 a0001c0001t0033 a0001c0001t0034 a0001c0001t0023 a0001c0001t0033 a0001c0001t0034	4	HG00735.hp1 HG01192.hp2 HG02109.hp1 others(1): Show HG00735.hp1 HG01192.hp2 HG02109.hp1 HG02486.hp2	5_prime_UTR_variant	MODIFIER	c.-265G>A c.-265G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/5	265		chr17	36937933
chr17:36938007	C C	T T	3	a0001c0003t0032 a0001c0003t0060 a0001c0003t0061 a0001c0003t0032 a0001c0003t0060 a0001c0003t0061	4	HG01109.hp1 HG02965.hp1 HG03139.hp2 others(1): Show HG01109.hp1 HG02965.hp1 HG03139.hp2 HG03225.hp2	5_prime_UTR_variant	MODIFIER	c.-191C>T c.-191C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/5	191		chr17	36938007
chr17:36938010	G G	A A	2	a0001c0001t0024 a0001c0001t0035 a0001c0001t0024 a0001c0001t0035	3	HG03098.hp1 HG03540.hp2 NA18906.hp2 HG03098.hp1 HG03540.hp2 NA18906.hp2	5_prime_UTR_variant	MODIFIER	c.-188G>A c.-188G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/5	188		chr17	36938010
chr17:36938105	G G	A A	1	a0001c0001t0036 a0001c0001t0036	1	NA19079.hp2 NA19079.hp2	5_prime_UTR_variant	MODIFIER	c.-93G>A c.-93G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/5	93		chr17	36938105
chr17:36938160	T T	C C	1	a0001c0001t0037 a0001c0001t0037	1	HG02723.hp1 HG02723.hp1	5_prime_UTR_variant	MODIFIER	c.-38T>C c.-38T>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/5	38		chr17	36938160
chr17:36938163	C C	T T	1	a0001c0001t0059 a0001c0001t0059	1	HG00280.hp1 HG00280.hp1	5_prime_UTR_variant	MODIFIER	c.-35C>T c.-35C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/5	35		chr17	36938163
chr17:36943197	G G	GA GA	18	a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 others(15): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0012 a0001c0001t0013 a0001c0001t0020 a0001c0001t0028 a0001c0001t0029 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0047 a0001c0001t0048 a0001c0001t0049 a0001c0001t0059 a0001c0005t0029 a0001c0007t0050 a0003c0008t0002	85	HG00140.hp1 HG00280.hp1 HG00323.hp1 others(82): Show HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00673.hp1 HG00673.hp2 HG00735.hp2 HG01106.hp1 HG01167.hp1 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01884.hp2 HG02055.hp1 HG02083.hp2 HG02132.hp1 HG02300.hp2 HG02523.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp1 HG02647.hp1 HG02698.hp2 HG02922.hp1 HG03017.hp1 HG03130.hp1 HG03453.hp1 HG03471.hp2 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03927.hp2 HG04115.hp2 HG06807.hp1 NA18747.hp2 NA18942.hp2 NA18944.hp2 NA18946.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp2 NA18963.hp2 NA18966.hp2 NA18968.hp1 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18977.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18982.hp2 NA18986.hp1 NA18992.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19007.hp1 NA19055.hp2 NA19057.hp1 NA19057.hp2 NA19067.hp2 NA19068.hp1 NA19082.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA19240.hp2 NA20129.hp2 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.77dupA c.77dupA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	78	INFO_REALIGN_3_PRIME	chr17	36943197
chr17:36943197	G G	GAA GAA	19	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(16): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0010 a0001c0001t0011 a0001c0001t0019 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0033 a0001c0001t0034 a0001c0001t0036 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0006t0001 a0002c0004t0004	223	HG00099.hp2 HG00140.hp2 HG00280.hp2 others(220): Show HG00099.hp2 HG00140.hp2 HG00280.hp2 HG00408.hp1 HG00408.hp2 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp1 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02300.hp1 HG02451.hp2 HG02523.hp2 HG02602.hp1 HG02615.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02735.hp1 HG02738.hp1 HG02886.hp2 HG02895.hp2 HG02922.hp2 HG02976.hp2 HG03017.hp2 HG03139.hp1 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03492.hp2 HG03540.hp1 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03688.hp2 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03927.hp1 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18747.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18945.hp1 NA18945.hp2 NA18946.hp2 NA18949.hp1 NA18951.hp1 NA18953.hp2 NA18959.hp2 NA18960.hp1 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18968.hp2 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18994.hp1 NA18994.hp2 NA18997.hp1 NA19000.hp1 NA19000.hp2 NA19002.hp1 NA19003.hp1 NA19004.hp1 NA19004.hp2 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19056.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19067.hp1 NA19074.hp1 NA19074.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19082.hp2 NA19085.hp2 NA19088.hp1 NA19088.hp2 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA20129.hp1 NA20300.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.76_77dupAA c.76_77dupAA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	78	INFO_REALIGN_3_PRIME	chr17	36943197
chr17:36943197	G G	GAAA GAAA	3	a0001c0001t0008 a0001c0001t0038 a0002c0004t0008 a0001c0001t0008 a0001c0001t0038 a0002c0004t0008	8	HG01261.hp1 HG02602.hp2 HG03195.hp2 others(5): Show HG01261.hp1 HG02602.hp2 HG03195.hp2 HG03704.hp1 NA18955.hp2 NA18990.hp2 NA19083.hp1 NA19083.hp2	3_prime_UTR_variant	MODIFIER	c.75_77dupAAA c.75_77dupAAA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	78	INFO_REALIGN_3_PRIME	chr17	36943197
chr17:36943197	GAA GAA	G G	4	a0001c0001t0009 a0001c0001t0018 a0001c0001t0023 others(1): Show a0001c0001t0009 a0001c0001t0018 a0001c0001t0023 a0001c0001t0031	15	HG01192.hp2 HG01891.hp2 HG02258.hp1 others(12): Show HG01192.hp2 HG01891.hp2 HG02258.hp1 HG02258.hp2 HG02486.hp2 HG02886.hp1 HG02970.hp1 HG02976.hp1 HG03041.hp1 HG03209.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 NA19030.hp1 NA19030.hp2	3_prime_UTR_variant	MODIFIER	c.76_77delAA c.76_77delAA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	76	INFO_REALIGN_3_PRIME	chr17	36943197
chr17:36943322	G G	T T	1	a0001c0001t0034 a0001c0001t0034	1	HG00735.hp1 HG00735.hp1	3_prime_UTR_variant	MODIFIER	c.191G>T c.191G>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	191		chr17	36943322
chr17:36943426	C C	A A	2	a0001c0001t0025 a0001c0001t0039 a0001c0001t0025 a0001c0001t0039	3	NA18953.hp2 NA18997.hp1 NA19011.hp1 NA18953.hp2 NA18997.hp1 NA19011.hp1	3_prime_UTR_variant	MODIFIER	c.295C>A c.295C>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	295		chr17	36943426
chr17:36943562	C C	T T	2	a0001c0001t0020 a0001c0001t0058 a0001c0001t0020 a0001c0001t0058	4	HG00735.hp2 NA18612.hp2 NA18949.hp2 others(1): Show HG00735.hp2 NA18612.hp2 NA18949.hp2 NA19087.hp2	3_prime_UTR_variant	MODIFIER	c.431C>T c.431C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	431		chr17	36943562
chr17:36943659	T T	G G	14	a0001c0001t0002 a0001c0001t0012 a0001c0001t0020 others(11): Show a0001c0001t0002 a0001c0001t0012 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0028 a0001c0001t0030 a0001c0001t0040 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0051 a0001c0001t0058 a0003c0008t0002	55	HG00423.hp1 HG00423.hp2 HG00438.hp1 others(52): Show HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00735.hp2 HG01167.hp1 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp1 HG01496.hp2 HG01884.hp2 HG01891.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp1 HG02970.hp2 HG03017.hp1 HG03130.hp1 HG03225.hp1 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03927.hp2 NA18612.hp2 NA18906.hp1 NA18942.hp2 NA18944.hp2 NA18949.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18966.hp2 NA18971.hp1 NA18980.hp1 NA18986.hp1 NA18991.hp1 NA18992.hp2 NA19001.hp2 NA19002.hp2 NA19003.hp2 NA19007.hp1 NA19043.hp2 NA19055.hp2 NA19067.hp2 NA19082.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.528T>G c.528T>G	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	528		chr17	36943659
chr17:36943683	G G	A A	14	a0001c0001t0002 a0001c0001t0012 a0001c0001t0020 others(11): Show a0001c0001t0002 a0001c0001t0012 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0028 a0001c0001t0030 a0001c0001t0040 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0051 a0001c0001t0058 a0003c0008t0002	55	HG00423.hp1 HG00423.hp2 HG00438.hp1 others(52): Show HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00735.hp2 HG01167.hp1 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp1 HG01496.hp2 HG01884.hp2 HG01891.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp1 HG02970.hp2 HG03017.hp1 HG03130.hp1 HG03225.hp1 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03927.hp2 NA18612.hp2 NA18906.hp1 NA18942.hp2 NA18944.hp2 NA18949.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18966.hp2 NA18971.hp1 NA18980.hp1 NA18986.hp1 NA18991.hp1 NA18992.hp2 NA19001.hp2 NA19002.hp2 NA19003.hp2 NA19007.hp1 NA19043.hp2 NA19055.hp2 NA19067.hp2 NA19082.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.552G>A c.552G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	552		chr17	36943683
chr17:36943842	C C	T T	1	a0001c0001t0057 a0001c0001t0057	1	HG02622.hp2 HG02622.hp2	3_prime_UTR_variant	MODIFIER	c.711C>T c.711C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	711		chr17	36943842
chr17:36943852	G G	A A	4	a0001c0001t0009 a0001c0001t0018 a0001c0001t0023 others(1): Show a0001c0001t0009 a0001c0001t0018 a0001c0001t0023 a0001c0001t0031	15	HG01192.hp2 HG01891.hp2 HG02258.hp1 others(12): Show HG01192.hp2 HG01891.hp2 HG02258.hp1 HG02258.hp2 HG02486.hp2 HG02886.hp1 HG02970.hp1 HG02976.hp1 HG03041.hp1 HG03209.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 NA19030.hp1 NA19030.hp2	3_prime_UTR_variant	MODIFIER	c.721G>A c.721G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	721		chr17	36943852
chr17:36943932	T T	TA TA	20	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(17): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0010 a0001c0001t0025 a0001c0001t0033 a0001c0001t0034 a0001c0001t0036 a0001c0001t0039 a0001c0001t0041 a0001c0001t0048 a0001c0001t0049 a0001c0001t0053 a0001c0001t0059 a0001c0006t0001 a0002c0004t0004 a0002c0004t0008	248	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(245): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01261.hp1 HG01346.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01884.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02300.hp1 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02735.hp1 HG02738.hp1 HG02886.hp2 HG02895.hp2 HG02922.hp2 HG02976.hp2 HG03017.hp2 HG03139.hp1 HG03195.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03492.hp2 HG03540.hp1 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03688.hp2 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03927.hp1 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18946.hp2 NA18949.hp1 NA18950.hp1 NA18950.hp2 NA18953.hp2 NA18955.hp2 NA18959.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18968.hp1 NA18968.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp2 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18980.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA19000.hp1 NA19001.hp1 NA19002.hp1 NA19003.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19060.hp1 NA19065.hp1 NA19067.hp1 NA19068.hp1 NA19074.hp1 NA19074.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19085.hp2 NA19088.hp1 NA19088.hp2 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA20300.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.816dupA c.816dupA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	817	INFO_REALIGN_3_PRIME	chr17	36943932
chr17:36943932	T T	TAA TAA	5	a0001c0001t0013 a0001c0001t0026 a0001c0001t0027 others(2): Show a0001c0001t0013 a0001c0001t0026 a0001c0001t0027 a0001c0001t0047 a0001c0001t0052	11	HG01192.hp1 HG01952.hp2 HG02055.hp1 others(8): Show HG01192.hp1 HG01952.hp2 HG02055.hp1 HG02630.hp2 HG02922.hp1 HG03453.hp1 HG03471.hp2 HG06807.hp1 NA19004.hp1 NA19240.hp2 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.815_816dupAA c.815_816dupAA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	817	INFO_REALIGN_3_PRIME	chr17	36943932
chr17:36943932	TA TA	T T	16	a0001c0001t0002 a0001c0001t0015 a0001c0001t0016 others(13): Show a0001c0001t0002 a0001c0001t0015 a0001c0001t0016 a0001c0001t0018 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0028 a0001c0001t0040 a0001c0001t0044 a0001c0001t0045 a0001c0001t0057 a0001c0001t0058 a0003c0008t0002	63	HG00423.hp1 HG00423.hp2 HG00438.hp1 others(60): Show HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00735.hp2 HG01167.hp1 HG01169.hp2 HG01192.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp1 HG01496.hp2 HG01891.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02486.hp2 HG02559.hp1 HG02622.hp1 HG02622.hp2 HG02809.hp1 HG02886.hp1 HG02895.hp1 HG02896.hp1 HG02965.hp2 HG02970.hp1 HG03017.hp1 HG03041.hp2 HG03130.hp2 HG03195.hp1 HG03453.hp2 HG03471.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp2 HG03927.hp2 NA18612.hp2 NA18906.hp2 NA18942.hp2 NA18944.hp2 NA18949.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18966.hp2 NA18971.hp1 NA18980.hp1 NA18986.hp1 NA18991.hp1 NA18992.hp2 NA19001.hp2 NA19002.hp2 NA19003.hp2 NA19007.hp1 NA19030.hp2 NA19043.hp2 NA19055.hp2 NA19067.hp2 NA19082.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.816delA c.816delA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	816	INFO_REALIGN_3_PRIME	chr17	36943932
chr17:36943932	TAA TAA	T T	6	a0001c0001t0009 a0001c0001t0030 a0001c0001t0031 others(3): Show a0001c0001t0009 a0001c0001t0030 a0001c0001t0031 a0001c0001t0046 a0001c0002t0017 a0001c0002t0056	17	HG01891.hp2 HG02258.hp1 HG02258.hp2 others(14): Show HG01891.hp2 HG02258.hp1 HG02258.hp2 HG02486.hp1 HG02723.hp2 HG02896.hp2 HG02970.hp2 HG02976.hp1 HG03041.hp1 HG03098.hp2 HG03209.hp2 HG03486.hp1 HG03486.hp2 HG03579.hp2 NA18906.hp1 NA18959.hp1 NA19030.hp1	3_prime_UTR_variant	MODIFIER	c.815_816delAA c.815_816delAA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	815	INFO_REALIGN_3_PRIME	chr17	36943932
chr17:36943955	G G	A A	1	a0001c0001t0010 a0001c0001t0010	5	HG02280.hp1 HG02615.hp2 HG03139.hp1 others(2): Show HG02280.hp1 HG02615.hp2 HG03139.hp1 NA18522.hp1 NA19240.hp1	3_prime_UTR_variant	MODIFIER	c.824G>A c.824G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	824		chr17	36943955
chr17:36943966	A A	G G	1	a0001c0001t0043 a0001c0001t0043	1	HG01070.hp1 HG01070.hp1	3_prime_UTR_variant	MODIFIER	c.835A>G c.835A>G	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	835		chr17	36943966
chr17:36944108	C C	G G	1	a0001c0003t0061 a0001c0003t0061	1	HG03139.hp2 HG03139.hp2	3_prime_UTR_variant	MODIFIER	c.977C>G c.977C>G	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	977		chr17	36944108
chr17:36944136	G G	C C	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1005G>C c.1005G>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1005		chr17	36944136
chr17:36944139	A A	C C	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1008A>C c.1008A>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1008		chr17	36944139
chr17:36944140	G G	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1009G>T c.1009G>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1009		chr17	36944140
chr17:36944143	T T	C C	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1012T>C c.1012T>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1012		chr17	36944143
chr17:36944144	G G	A A	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1013G>A c.1013G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1013		chr17	36944144
chr17:36944146	A A	C C	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1015A>C c.1015A>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1015		chr17	36944146
chr17:36944147	A A	C C	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1016A>C c.1016A>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1016		chr17	36944147
chr17:36944149	A A	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1018A>T c.1018A>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1018		chr17	36944149
chr17:36944150	A A	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1019A>T c.1019A>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1019		chr17	36944150
chr17:36944152	G G	C C	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1021G>C c.1021G>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1021		chr17	36944152
chr17:36944153	T T	C C	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1022T>C c.1022T>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1022		chr17	36944153
chr17:36944154	G G	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1023G>T c.1023G>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1023		chr17	36944154
chr17:36944157	G G	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1026G>T c.1026G>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1026		chr17	36944157
chr17:36944158	T T	C C	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1027T>C c.1027T>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1027		chr17	36944158
chr17:36944159	T T	A A	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1028T>A c.1028T>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1028		chr17	36944159
chr17:36944162	C C	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1031C>T c.1031C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1031		chr17	36944162
chr17:36944163	A A	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1032A>T c.1032A>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1032		chr17	36944163
chr17:36944164	C C	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1033C>T c.1033C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1033		chr17	36944164
chr17:36944165	G G	A A	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1034G>A c.1034G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1034		chr17	36944165
chr17:36944168	G G	C C	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1037G>C c.1037G>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1037		chr17	36944168
chr17:36944172	A A	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1041A>T c.1041A>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1041		chr17	36944172
chr17:36944173	G G	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1042G>T c.1042G>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1042		chr17	36944173
chr17:36944179	A A	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1048A>T c.1048A>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1048		chr17	36944179
chr17:36944184	C C	A A	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1053C>A c.1053C>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1053		chr17	36944184
chr17:36944187	T T	G G	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1056T>G c.1056T>G	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1056		chr17	36944187
chr17:36944189	C C	G G	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1058C>G c.1058C>G	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1058		chr17	36944189
chr17:36944190	A A	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1059A>T c.1059A>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1059		chr17	36944190
chr17:36944191	G G	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1060G>T c.1060G>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1060		chr17	36944191
chr17:36944192	A A	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1061A>T c.1061A>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1061		chr17	36944192
chr17:36944194	A A	C C	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1063A>C c.1063A>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1063		chr17	36944194
chr17:36944195	G G	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1064G>T c.1064G>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1064		chr17	36944195
chr17:36944208	A A	T T	1	a0001c0001t0048 a0001c0001t0048	1	NA18982.hp1 NA18982.hp1	3_prime_UTR_variant	MODIFIER	c.1077A>T c.1077A>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1077		chr17	36944208
chr17:36944264	T T	TA TA	8	a0001c0001t0005 a0001c0001t0007 a0001c0001t0014 others(5): Show a0001c0001t0005 a0001c0001t0007 a0001c0001t0014 a0001c0001t0019 a0001c0001t0023 a0001c0001t0039 a0001c0001t0047 a0001c0003t0032	35	HG00323.hp2 HG00408.hp1 HG00408.hp2 others(32): Show HG00323.hp2 HG00408.hp1 HG00408.hp2 HG01106.hp2 HG01192.hp2 HG01243.hp1 HG02027.hp1 HG02027.hp2 HG02083.hp1 HG02083.hp2 HG02135.hp2 HG02293.hp2 HG02486.hp2 HG02523.hp2 HG02698.hp1 HG02698.hp2 HG02965.hp1 HG03225.hp2 HG03453.hp1 HG03710.hp1 HG04199.hp2 NA18951.hp1 NA18963.hp2 NA18968.hp1 NA18971.hp2 NA18980.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA19000.hp2 NA19004.hp2 NA19060.hp2 NA19065.hp2 NA20905.hp2	3_prime_UTR_variant	MODIFIER	c.1151dupA c.1151dupA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1152	INFO_REALIGN_3_PRIME	chr17	36944264
chr17:36944264	T T	TAA TAA	2	a0001c0001t0013 a0001c0001t0052 a0001c0001t0013 a0001c0001t0052	6	HG02055.hp1 HG02630.hp2 HG02922.hp1 others(3): Show HG02055.hp1 HG02630.hp2 HG02922.hp1 HG03471.hp2 HG06807.hp1 NA19240.hp2	3_prime_UTR_variant	MODIFIER	c.1150_1151dupAA c.1150_1151dupAA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1152	INFO_REALIGN_3_PRIME	chr17	36944264
chr17:36944264	TA TA	T T	19	a0001c0001t0002 a0001c0001t0004 a0001c0001t0012 others(16): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0012 a0001c0001t0020 a0001c0001t0021 a0001c0001t0024 a0001c0001t0027 a0001c0001t0030 a0001c0001t0040 a0001c0001t0043 a0001c0001t0046 a0001c0001t0049 a0001c0001t0051 a0001c0001t0054 a0001c0001t0058 a0001c0002t0056 a0001c0007t0050 a0002c0004t0004 a0003c0008t0002	74	HG00423.hp1 HG00423.hp2 HG00438.hp1 others(71): Show HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00735.hp2 HG01070.hp1 HG01106.hp1 HG01109.hp2 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01192.hp1 HG01243.hp2 HG01257.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp1 HG01496.hp1 HG01884.hp2 HG02004.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp2 HG02615.hp1 HG02622.hp1 HG02809.hp2 HG02895.hp2 HG02970.hp2 HG03017.hp1 HG03098.hp2 HG03130.hp1 HG03225.hp1 HG03540.hp2 HG03579.hp1 HG03927.hp2 HG04199.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp2 NA18949.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18965.hp2 NA18966.hp2 NA18971.hp1 NA18975.hp1 NA18978.hp1 NA18980.hp1 NA18986.hp1 NA18991.hp1 NA18992.hp2 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp2 NA19007.hp1 NA19043.hp2 NA19055.hp2 NA19067.hp2 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.1151delA c.1151delA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1151	INFO_REALIGN_3_PRIME	chr17	36944264
chr17:36944264	TAA TAA	T T	9	a0001c0001t0009 a0001c0001t0015 a0001c0001t0018 others(6): Show a0001c0001t0009 a0001c0001t0015 a0001c0001t0018 a0001c0001t0022 a0001c0001t0035 a0001c0001t0042 a0001c0001t0045 a0001c0001t0055 a0001c0001t0057	23	HG01496.hp2 HG01891.hp1 HG01891.hp2 others(20): Show HG01496.hp2 HG01891.hp1 HG01891.hp2 HG02559.hp1 HG02622.hp2 HG02647.hp2 HG02886.hp1 HG02895.hp1 HG02896.hp1 HG02970.hp1 HG02976.hp1 HG03041.hp1 HG03098.hp1 HG03130.hp2 HG03209.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 NA18942.hp2 NA18992.hp1 NA19030.hp1 NA19030.hp2	3_prime_UTR_variant	MODIFIER	c.1150_1151delAA c.1150_1151delAA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1150	INFO_REALIGN_3_PRIME	chr17	36944264
chr17:36944264	TAAA TAAA	T T	3	a0001c0001t0016 a0001c0001t0028 a0001c0001t0031 a0001c0001t0016 a0001c0001t0028 a0001c0001t0031	8	HG02258.hp1 HG02258.hp2 HG02809.hp1 others(5): Show HG02258.hp1 HG02258.hp2 HG02809.hp1 HG02965.hp2 HG03041.hp2 HG03195.hp1 HG03491.hp2 HG03492.hp1	3_prime_UTR_variant	MODIFIER	c.1149_1151delAAA c.1149_1151delAAA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1149	INFO_REALIGN_3_PRIME	chr17	36944264
chr17:36944297	A A	T T	1	a0001c0001t0041 a0001c0001t0041	1	HG02273.hp1 HG02273.hp1	3_prime_UTR_variant	MODIFIER	c.1166A>T c.1166A>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	5/5	1166		chr17	36944297

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr17:36938389	C C	CTCTGCTG others(3): Show CTCTGCTGCTA	1	a0001c0001t0042g0030 a0001c0001t0042g0030	1	NA18992.hp1 NA18992.hp1	intron_variant	MODIFIER	c.170+23_170+32dupTC others(8): Show c.170+23_170+32dupTCTGCTGCTA	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4	INFO_REALIGN_3_PRIME	chr17	36938389
chr17:36938459	C C	A A	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG04228.hp2 HG04228.hp2	intron_variant	MODIFIER	c.170+92C>A c.170+92C>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36938459
chr17:36938748	C C	T T	1	a0001c0001t0024g0017 a0001c0001t0024g0017	2	HG03540.hp2 NA18906.hp2 HG03540.hp2 NA18906.hp2	intron_variant	MODIFIER	c.170+381C>T c.170+381C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36938748
chr17:36938839	G G	A A	1	a0001c0001t0007g0019 a0001c0001t0007g0019	1	NA18980.hp2 NA18980.hp2	intron_variant	MODIFIER	c.170+472G>A c.170+472G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36938839
chr17:36938929	G G	A A	3	a0001c0002t0017g0007 a0001c0002t0056g0007 a0001c0005t0029g0007 a0001c0002t0017g0007 a0001c0002t0056g0007 a0001c0005t0029g0007	6	HG02486.hp1 HG02647.hp1 HG02723.hp2 others(3): Show HG02486.hp1 HG02647.hp1 HG02723.hp2 HG02896.hp2 HG03098.hp2 HG03579.hp2	intron_variant	MODIFIER	c.170+562G>A c.170+562G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36938929
chr17:36939062	C C	G G	18	a0001c0001t0002g0002 a0001c0001t0006g0013 a0001c0001t0012g0002 others(15): Show a0001c0001t0002g0002 a0001c0001t0006g0013 a0001c0001t0012g0002 a0001c0001t0014g0013 a0001c0001t0014g0029 a0001c0001t0020g0002 a0001c0001t0021g0006 a0001c0001t0022g0002 a0001c0001t0022g0006 a0001c0001t0028g0002 a0001c0001t0030g0006 a0001c0001t0040g0002 a0001c0001t0044g0002 a0001c0001t0045g0002 a0001c0001t0046g0002 a0001c0001t0051g0002 a0001c0001t0058g0002 a0003c0008t0002g0002	59	HG00323.hp2 HG00423.hp1 HG00423.hp2 others(56): Show HG00323.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00735.hp2 HG01106.hp2 HG01167.hp1 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp1 HG01496.hp2 HG01884.hp2 HG01891.hp1 HG02109.hp2 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp1 HG02970.hp2 HG03017.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03927.hp2 NA18612.hp2 NA18906.hp1 NA18942.hp2 NA18944.hp2 NA18949.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18966.hp2 NA18971.hp1 NA18980.hp1 NA18986.hp1 NA18991.hp1 NA18992.hp2 NA19001.hp2 NA19002.hp2 NA19003.hp2 NA19007.hp1 NA19043.hp2 NA19055.hp2 NA19067.hp2 NA19082.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA20129.hp2	intron_variant	MODIFIER	c.170+695C>G c.170+695C>G	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939062
chr17:36939161	G G	A A	5	a0001c0001t0015g0010 a0001c0001t0015g0021 a0001c0001t0016g0010 others(2): Show a0001c0001t0015g0010 a0001c0001t0015g0021 a0001c0001t0016g0010 a0001c0001t0016g0014 a0001c0001t0057g0020	9	HG02622.hp2 HG02809.hp1 HG02895.hp1 others(6): Show HG02622.hp2 HG02809.hp1 HG02895.hp1 HG02896.hp1 HG02965.hp2 HG03041.hp2 HG03130.hp2 HG03195.hp1 HG03453.hp2	intron_variant	MODIFIER	c.170+794G>A c.170+794G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939161
chr17:36939209	G G	C C	18	a0001c0001t0002g0002 a0001c0001t0006g0013 a0001c0001t0012g0002 others(15): Show a0001c0001t0002g0002 a0001c0001t0006g0013 a0001c0001t0012g0002 a0001c0001t0014g0013 a0001c0001t0014g0029 a0001c0001t0020g0002 a0001c0001t0021g0006 a0001c0001t0022g0002 a0001c0001t0022g0006 a0001c0001t0028g0002 a0001c0001t0030g0006 a0001c0001t0040g0002 a0001c0001t0044g0002 a0001c0001t0045g0002 a0001c0001t0046g0002 a0001c0001t0051g0002 a0001c0001t0058g0002 a0003c0008t0002g0002	59	HG00323.hp2 HG00423.hp1 HG00423.hp2 others(56): Show HG00323.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00735.hp2 HG01106.hp2 HG01167.hp1 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp1 HG01496.hp2 HG01884.hp2 HG01891.hp1 HG02109.hp2 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp1 HG02970.hp2 HG03017.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03927.hp2 NA18612.hp2 NA18906.hp1 NA18942.hp2 NA18944.hp2 NA18949.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18966.hp2 NA18971.hp1 NA18980.hp1 NA18986.hp1 NA18991.hp1 NA18992.hp2 NA19001.hp2 NA19002.hp2 NA19003.hp2 NA19007.hp1 NA19043.hp2 NA19055.hp2 NA19067.hp2 NA19082.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA20129.hp2	intron_variant	MODIFIER	c.170+842G>C c.170+842G>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939209
chr17:36939359	C C	T T	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.171-931C>T c.171-931C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939359
chr17:36939465	G G	C C	1	a0001c0001t0014g0029 a0001c0001t0014g0029	1	HG00323.hp2 HG00323.hp2	intron_variant	MODIFIER	c.171-825G>C c.171-825G>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939465
chr17:36939594	G G	A A	3	a0001c0001t0009g0004 a0001c0001t0018g0004 a0001c0001t0031g0004 a0001c0001t0009g0004 a0001c0001t0018g0004 a0001c0001t0031g0004	12	HG01891.hp2 HG02258.hp1 HG02258.hp2 others(9): Show HG01891.hp2 HG02258.hp1 HG02258.hp2 HG02886.hp1 HG02970.hp1 HG02976.hp1 HG03041.hp1 HG03209.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 NA19030.hp2	intron_variant	MODIFIER	c.171-696G>A c.171-696G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939594
chr17:36939670	G G	T T	3	a0001c0003t0032g0012 a0001c0003t0060g0012 a0001c0003t0061g0012 a0001c0003t0032g0012 a0001c0003t0060g0012 a0001c0003t0061g0012	4	HG01109.hp1 HG02965.hp1 HG03139.hp2 others(1): Show HG01109.hp1 HG02965.hp1 HG03139.hp2 HG03225.hp2	intron_variant	MODIFIER	c.171-620G>T c.171-620G>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939670
chr17:36939901	C C	A A	29	a0001c0001t0002g0002 a0001c0001t0006g0013 a0001c0001t0012g0002 others(26): Show a0001c0001t0002g0002 a0001c0001t0006g0013 a0001c0001t0012g0002 a0001c0001t0014g0013 a0001c0001t0014g0029 a0001c0001t0015g0010 a0001c0001t0015g0021 a0001c0001t0016g0010 a0001c0001t0016g0014 a0001c0001t0020g0002 a0001c0001t0021g0006 a0001c0001t0022g0002 a0001c0001t0022g0006 a0001c0001t0024g0017 a0001c0001t0028g0002 a0001c0001t0030g0006 a0001c0001t0035g0023 a0001c0001t0040g0002 a0001c0001t0044g0002 a0001c0001t0045g0002 a0001c0001t0046g0002 a0001c0001t0051g0002 a0001c0001t0057g0020 a0001c0001t0058g0002 a0001c0002t0017g0007 a0001c0002t0056g0007 a0001c0005t0029g0007 a0001c0007t0050g0022 a0003c0008t0002g0002	78	HG00323.hp2 HG00423.hp1 HG00423.hp2 others(75): Show HG00323.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00735.hp2 HG01106.hp2 HG01167.hp1 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp1 HG01496.hp2 HG01884.hp2 HG01891.hp1 HG02109.hp2 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02723.hp2 HG02809.hp1 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02965.hp2 HG02970.hp2 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03491.hp2 HG03492.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03927.hp2 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18942.hp2 NA18944.hp2 NA18949.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18966.hp2 NA18971.hp1 NA18980.hp1 NA18986.hp1 NA18991.hp1 NA18992.hp2 NA19001.hp2 NA19002.hp2 NA19003.hp2 NA19007.hp1 NA19043.hp2 NA19055.hp2 NA19067.hp2 NA19082.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA20129.hp2 NA20300.hp1	intron_variant	MODIFIER	c.171-389C>A c.171-389C>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939901
chr17:36939922	C C	T T	4	a0001c0001t0005g0009 a0001c0001t0007g0009 a0001c0001t0007g0019 others(1): Show a0001c0001t0005g0009 a0001c0001t0007g0009 a0001c0001t0007g0019 a0001c0001t0029g0009	7	NA18963.hp2 NA18968.hp1 NA18980.hp2 others(4): Show NA18963.hp2 NA18968.hp1 NA18980.hp2 NA18995.hp1 NA18997.hp2 NA19004.hp2 NA19057.hp2	intron_variant	MODIFIER	c.171-368C>T c.171-368C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939922
chr17:36939937	G G	A A	1	a0002c0004t0008g0024 a0002c0004t0008g0024	1	HG03195.hp2 HG03195.hp2	intron_variant	MODIFIER	c.171-353G>A c.171-353G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939937
chr17:36939952	C C	T T	2	a0001c0001t0001g0016 a0001c0001t0049g0016 a0001c0001t0001g0016 a0001c0001t0049g0016	2	HG01106.hp1 HG02148.hp1 HG01106.hp1 HG02148.hp1	intron_variant	MODIFIER	c.171-338C>T c.171-338C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36939952
chr17:36940073	C C	G G	15	a0001c0001t0002g0002 a0001c0001t0012g0002 a0001c0001t0020g0002 others(12): Show a0001c0001t0002g0002 a0001c0001t0012g0002 a0001c0001t0020g0002 a0001c0001t0021g0006 a0001c0001t0022g0002 a0001c0001t0022g0006 a0001c0001t0028g0002 a0001c0001t0030g0006 a0001c0001t0040g0002 a0001c0001t0044g0002 a0001c0001t0045g0002 a0001c0001t0046g0002 a0001c0001t0051g0002 a0001c0001t0058g0002 a0003c0008t0002g0002	55	HG00423.hp1 HG00423.hp2 HG00438.hp1 others(52): Show HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00735.hp2 HG01167.hp1 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp1 HG01496.hp2 HG01884.hp2 HG01891.hp1 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp1 HG02970.hp2 HG03017.hp1 HG03130.hp1 HG03225.hp1 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03927.hp2 NA18612.hp2 NA18906.hp1 NA18942.hp2 NA18944.hp2 NA18949.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18966.hp2 NA18971.hp1 NA18980.hp1 NA18986.hp1 NA18991.hp1 NA18992.hp2 NA19001.hp2 NA19002.hp2 NA19003.hp2 NA19007.hp1 NA19043.hp2 NA19055.hp2 NA19067.hp2 NA19082.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA20129.hp2	intron_variant	MODIFIER	c.171-217C>G c.171-217C>G	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36940073
chr17:36940101	C C	T T	5	a0001c0001t0024g0017 a0001c0001t0035g0023 a0001c0002t0017g0007 others(2): Show a0001c0001t0024g0017 a0001c0001t0035g0023 a0001c0002t0017g0007 a0001c0002t0056g0007 a0001c0005t0029g0007	9	HG02486.hp1 HG02647.hp1 HG02723.hp2 others(6): Show HG02486.hp1 HG02647.hp1 HG02723.hp2 HG02896.hp2 HG03098.hp1 HG03098.hp2 HG03540.hp2 HG03579.hp2 NA18906.hp2	intron_variant	MODIFIER	c.171-189C>T c.171-189C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	1/4		chr17	36940101
chr17:36941128	T T	C C	1	a0001c0001t0057g0020 a0001c0001t0057g0020	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.675+241T>C c.675+241T>C	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36941128
chr17:36941219	C C	T T	1	a0001c0001t0001g0011 a0001c0001t0001g0011	4	HG01884.hp1 HG02257.hp2 HG02922.hp2 others(1): Show HG01884.hp1 HG02257.hp2 HG02922.hp2 NA18522.hp2	intron_variant	MODIFIER	c.675+332C>T c.675+332C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36941219
chr17:36941225	G G	T T	2	a0001c0001t0001g0008 a0001c0001t0004g0008 a0001c0001t0001g0008 a0001c0001t0004g0008	6	HG00609.hp2 HG00738.hp1 NA18968.hp2 others(3): Show HG00609.hp2 HG00738.hp1 NA18968.hp2 NA18975.hp1 NA18978.hp1 NA18991.hp2	intron_variant	MODIFIER	c.675+338G>T c.675+338G>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36941225
chr17:36941381	C C	T T	3	a0001c0001t0021g0006 a0001c0001t0022g0006 a0001c0001t0030g0006 a0001c0001t0021g0006 a0001c0001t0022g0006 a0001c0001t0030g0006	7	HG01891.hp1 HG02280.hp2 HG02451.hp1 others(4): Show HG01891.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp1 HG02970.hp2 NA18906.hp1 NA19043.hp2	intron_variant	MODIFIER	c.675+494C>T c.675+494C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36941381
chr17:36941500	G G	A A	1	a0001c0001t0023g0015 a0001c0001t0023g0015	2	HG01192.hp2 HG02486.hp2 HG01192.hp2 HG02486.hp2	intron_variant	MODIFIER	c.675+613G>A c.675+613G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36941500
chr17:36941553	G G	A A	5	a0001c0001t0015g0010 a0001c0001t0015g0021 a0001c0001t0016g0010 others(2): Show a0001c0001t0015g0010 a0001c0001t0015g0021 a0001c0001t0016g0010 a0001c0001t0016g0014 a0001c0001t0057g0020	9	HG02622.hp2 HG02809.hp1 HG02895.hp1 others(6): Show HG02622.hp2 HG02809.hp1 HG02895.hp1 HG02896.hp1 HG02965.hp2 HG03041.hp2 HG03130.hp2 HG03195.hp1 HG03453.hp2	intron_variant	MODIFIER	c.676-647G>A c.676-647G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36941553
chr17:36941659	A A	G G	2	a0001c0001t0015g0010 a0001c0001t0016g0010 a0001c0001t0015g0010 a0001c0001t0016g0010	5	HG02809.hp1 HG02895.hp1 HG02896.hp1 others(2): Show HG02809.hp1 HG02895.hp1 HG02896.hp1 HG03041.hp2 HG03130.hp2	intron_variant	MODIFIER	c.676-541A>G c.676-541A>G	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36941659
chr17:36941767	G G	T T	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.676-433G>T c.676-433G>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36941767
chr17:36941984	G G	A A	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	HG03704.hp2 HG03704.hp2	intron_variant	MODIFIER	c.676-216G>A c.676-216G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36941984
chr17:36941995	G G	A A	4	a0001c0001t0015g0010 a0001c0001t0015g0021 a0001c0001t0016g0010 others(1): Show a0001c0001t0015g0010 a0001c0001t0015g0021 a0001c0001t0016g0010 a0001c0001t0057g0020	7	HG02622.hp2 HG02809.hp1 HG02895.hp1 others(4): Show HG02622.hp2 HG02809.hp1 HG02895.hp1 HG02896.hp1 HG03041.hp2 HG03130.hp2 HG03453.hp2	intron_variant	MODIFIER	c.676-205G>A c.676-205G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36941995
chr17:36942013	T T	A A	3	a0001c0002t0017g0007 a0001c0002t0056g0007 a0001c0005t0029g0007 a0001c0002t0017g0007 a0001c0002t0056g0007 a0001c0005t0029g0007	6	HG02486.hp1 HG02647.hp1 HG02723.hp2 others(3): Show HG02486.hp1 HG02647.hp1 HG02723.hp2 HG02896.hp2 HG03098.hp2 HG03579.hp2	intron_variant	MODIFIER	c.676-187T>A c.676-187T>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36942013
chr17:36942166	C C	T T	23	a0001c0001t0002g0002 a0001c0001t0006g0013 a0001c0001t0012g0002 others(20): Show a0001c0001t0002g0002 a0001c0001t0006g0013 a0001c0001t0012g0002 a0001c0001t0014g0013 a0001c0001t0014g0029 a0001c0001t0015g0010 a0001c0001t0015g0021 a0001c0001t0016g0010 a0001c0001t0016g0014 a0001c0001t0020g0002 a0001c0001t0021g0006 a0001c0001t0022g0002 a0001c0001t0022g0006 a0001c0001t0028g0002 a0001c0001t0030g0006 a0001c0001t0040g0002 a0001c0001t0044g0002 a0001c0001t0045g0002 a0001c0001t0046g0002 a0001c0001t0051g0002 a0001c0001t0057g0020 a0001c0001t0058g0002 a0003c0008t0002g0002	68	HG00323.hp2 HG00423.hp1 HG00423.hp2 others(65): Show HG00323.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00735.hp2 HG01106.hp2 HG01167.hp1 HG01169.hp2 HG01243.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp1 HG01496.hp2 HG01884.hp2 HG01891.hp1 HG02109.hp2 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02809.hp1 HG02895.hp1 HG02896.hp1 HG02965.hp2 HG02970.hp2 HG03017.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03491.hp2 HG03492.hp1 HG03579.hp1 HG03927.hp2 NA18612.hp2 NA18906.hp1 NA18942.hp2 NA18944.hp2 NA18949.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18966.hp2 NA18971.hp1 NA18980.hp1 NA18986.hp1 NA18991.hp1 NA18992.hp2 NA19001.hp2 NA19002.hp2 NA19003.hp2 NA19007.hp1 NA19043.hp2 NA19055.hp2 NA19067.hp2 NA19082.hp1 NA19085.hp1 NA19087.hp1 NA19087.hp2 NA20129.hp2	intron_variant	MODIFIER	c.676-34C>T c.676-34C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	3/4		chr17	36942166
chr17:36942391	G G	A A	38	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0011 others(35): Show a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0001g0011 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0003g0001 a0001c0001t0004g0001 a0001c0001t0004g0008 a0001c0001t0005g0001 a0001c0001t0005g0009 a0001c0001t0007g0001 a0001c0001t0007g0009 a0001c0001t0007g0019 a0001c0001t0008g0001 a0001c0001t0010g0001 a0001c0001t0011g0001 a0001c0001t0019g0001 a0001c0001t0025g0001 a0001c0001t0026g0001 a0001c0001t0027g0001 a0001c0001t0029g0009 a0001c0001t0033g0001 a0001c0001t0034g0001 a0001c0001t0036g0001 a0001c0001t0038g0001 a0001c0001t0039g0001 a0001c0001t0041g0001 a0001c0001t0042g0030 a0001c0001t0043g0001 a0001c0001t0048g0001 a0001c0001t0049g0016 a0001c0001t0059g0001 a0001c0006t0001g0001 a0002c0004t0004g0001 a0002c0004t0008g0024	262	HG00099.hp2 HG00140.hp1 HG00140.hp2 others(259): Show HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01261.hp1 HG01346.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02300.hp1 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02630.hp1 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02735.hp1 HG02738.hp1 HG02886.hp2 HG02895.hp2 HG02922.hp2 HG02976.hp2 HG03017.hp2 HG03139.hp1 HG03195.hp2 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03492.hp2 HG03540.hp1 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03927.hp1 HG03942.hp1 HG03942.hp2 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18747.hp1 NA18747.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18946.hp2 NA18949.hp1 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18953.hp2 NA18955.hp2 NA18959.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18968.hp1 NA18968.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18980.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp2 NA18992.hp1 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA19000.hp1 NA19000.hp2 NA19001.hp1 NA19002.hp1 NA19003.hp1 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19067.hp1 NA19068.hp1 NA19074.hp1 NA19074.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19085.hp2 NA19088.hp1 NA19088.hp2 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA20129.hp1 NA20300.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.841+26G>A c.841+26G>A	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	4/4		chr17	36942391
chr17:36942576	C C	T T	1	a0001c0001t0009g0026 a0001c0001t0009g0026	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.842-176C>T c.842-176C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	4/4		chr17	36942576
chr17:36942610	C C	T T	1	a0001c0001t0057g0020 a0001c0001t0057g0020	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.842-142C>T c.842-142C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	4/4		chr17	36942610
chr17:36942651	C C	T T	79	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0008 others(76): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0011 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0002g0002 a0001c0001t0003g0001 a0001c0001t0004g0001 a0001c0001t0004g0008 a0001c0001t0005g0001 a0001c0001t0005g0009 a0001c0001t0006g0013 a0001c0001t0007g0001 a0001c0001t0007g0009 a0001c0001t0007g0019 a0001c0001t0008g0001 a0001c0001t0009g0004 a0001c0001t0009g0026 a0001c0001t0010g0001 a0001c0001t0011g0001 a0001c0001t0012g0002 a0001c0001t0013g0005 a0001c0001t0014g0013 a0001c0001t0014g0029 a0001c0001t0015g0010 a0001c0001t0015g0021 a0001c0001t0016g0010 a0001c0001t0016g0014 a0001c0001t0018g0004 a0001c0001t0019g0001 a0001c0001t0020g0002 a0001c0001t0021g0006 a0001c0001t0022g0002 a0001c0001t0022g0006 a0001c0001t0023g0015 a0001c0001t0024g0017 a0001c0001t0025g0001 a0001c0001t0026g0001 a0001c0001t0027g0001 a0001c0001t0028g0002 a0001c0001t0029g0009 a0001c0001t0030g0006 a0001c0001t0031g0004 a0001c0001t0033g0001 a0001c0001t0034g0001 a0001c0001t0035g0023 a0001c0001t0036g0001 a0001c0001t0038g0001 a0001c0001t0039g0001 a0001c0001t0040g0002 a0001c0001t0041g0001 a0001c0001t0042g0030 a0001c0001t0043g0001 a0001c0001t0044g0002 a0001c0001t0045g0002 a0001c0001t0046g0002 a0001c0001t0047g0005 a0001c0001t0048g0001 a0001c0001t0049g0016 a0001c0001t0051g0002 a0001c0001t0052g0005 a0001c0001t0057g0020 a0001c0001t0058g0002 a0001c0001t0059g0001 a0001c0002t0017g0007 a0001c0002t0056g0007 a0001c0003t0032g0012 a0001c0003t0060g0012 a0001c0003t0061g0012 a0001c0005t0029g0007 a0001c0006t0001g0001 a0001c0007t0050g0022 a0002c0004t0004g0001 a0002c0004t0008g0024 a0003c0008t0002g0002	367	HG00099.hp2 HG00140.hp1 HG00140.hp2 others(364): Show HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01167.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18946.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18953.hp1 NA18953.hp2 NA18955.hp1 NA18955.hp2 NA18959.hp1 NA18959.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18968.hp1 NA18968.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA19000.hp1 NA19000.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp2 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19055.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19067.hp1 NA19067.hp2 NA19068.hp1 NA19074.hp1 NA19074.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19085.hp1 NA19085.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19088.hp2 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.842-101C>T c.842-101C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	4/4		chr17	36942651
chr17:36942702	C C	T T	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.842-50C>T c.842-50C>T	LHX1	ENSG00000273706.5	transcript	ENST00000614239.1	protein_coding	4/4		chr17	36942702

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🧬 JoGo Online Haplotype Explorer LHX1_chr17_36932475_36949612

JoGo Local Haplotype Explorer (on iGV) LHX1_chr17_36932475_36949612

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 3)

CCoding Level Haplotype Info (Total: 8)

TTranscript Level Haplotype Info (Total: 61)

GGenebody Level Haplotype Info (Total: 30)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 8)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 66)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 85)

Haplotype Details by Sample (Haploid Level) (Total: 385)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

CCoding Level Variants (Synonymous Mutations) (Total: 5)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 62)

GGenebody Level Haplotype Variants (Intron) (Total: 35)

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Annotation (Repeats)

Annotation (SNP Array)