Joint Open Genome and Omics Platform (JoGo)

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geneid	389730
ensemblid	ENSG00000185775.10
hgncid	32006
symbol	SPATA31A6
name	SPATA31 subfamily A member 6
refseq_nuc	NM_001145196.1
refseq_prot	NP_001138668.1
ensembl_nuc	ENST00000332857.7
ensembl_prot	ENSP00000329825.6
mane_status	MANE Select
chr	chr9
start	42183659
end	42189887
strand	+
ver	v1.2
region	chr9:42183659-42189887
region5000	chr9:42178659-42194887
regionname0	SPATA31A6_chr9_42183659_42189887
regionname5000	SPATA31A6_chr9_42178659_42194887

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	1343	59	9	13	26	5	6	14	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0002	0/1	1343	38	3	18	9	1	6	5	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0003	1/0	1343	27	5	3	8	6	4	4	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0004	0/0	1343	9	0	1	8	0	0	7	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0005	0/0	1347	6	0	0	6	0	0	6	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0006	0/0	1343	5	3	0	0	0	2	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0007	0/0	1343	4	4	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0008	0/0	1343	2	2	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0009	0/0	1343	2	2	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0010	0/0	1343	2	0	0	2	0	0	2	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0011	0/0	1343	2	2	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0012	0/0	1343	2	0	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0013	0/0	1343	2	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0014	0/0	1343	1	1	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0015	0/0	1343	1	1	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0016	0/0	1347	1	0	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0017	0/0	1347	1	0	0	1	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0018	0/0	1347	1	0	0	1	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0019	0/0	1343	1	1	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0020	0/0	1343	1	0	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0021	0/0	1343	1	0	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0022	0/0	1343	1	0	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0023	0/0	1343	1	0	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0024	0/0	1343	1	0	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0025	0/0	1343	1	0	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0026	0/0	1343	1	0	0	1	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0027	0/0	1343	1	1	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0028	0/0	1343	1	1	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0029	0/0	1343	1	1	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0030	0/0	1343	1	0	0	1	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0031	0/0	1343	1	0	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0032	0/0	1343	1	0	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0033	0/0	1347	1	1	0	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0034	0/0	1347	1	0	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0035	0/0	1343	1	0	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	4032	54	8	13	24	3	6	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0002	0/1	4032	35	2	16	9	1	6	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0003	1/0	4032	26	5	3	8	5	4	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0004	0/0	4032	9	0	1	8	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0005	0/0	4044	6	0	0	6	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0006	0/0	4032	4	4	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0007	0/0	4032	3	1	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0008	0/0	4032	3	3	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0009	0/0	4032	2	0	2	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0010	0/0	4032	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0011	0/0	4032	2	1	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0012	0/0	4032	2	0	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0013	0/0	4032	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0014	0/0	4032	2	0	0	0	0	2	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0015	0/0	4032	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0016	0/0	4032	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0017	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0018	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0019	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0020	0/0	4032	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0021	0/0	4032	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0022	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0023	0/0	4032	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0024	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0025	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0026	0/0	4032	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0027	0/0	4032	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0028	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0029	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0030	0/0	4032	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0031	0/0	4032	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0032	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0033	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0034	0/0	4044	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0035	0/0	4044	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0036	0/0	4044	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0037	0/0	4032	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0038	0/0	4044	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0039	0/0	4032	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0040	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0041	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0042	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
c0043	0/0	4044	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	183	78	9	18	36	6	9	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0002	1/1	183	69	15	21	15	5	11	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0003	0/0	183	18	9	1	4	3	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0004	0/0	183	7	0	0	6	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0005	0/0	183	2	0	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0006	0/0	183	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0007	0/0	183	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0008	0/0	183	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0009	0/0	183	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0010	0/0	183	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0011	0/0	183	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
t0012	0/0	183	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	27	1	2	21	0	3	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0002	0/1	26	2	11	4	2	6	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0003	0/0	22	3	10	5	1	3	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0004	0/0	6	0	0	5	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0005	0/0	6	0	4	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0006	0/0	5	2	2	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0007	0/0	5	0	3	0	1	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0008	0/0	4	1	0	2	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0009	0/0	4	1	1	1	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0010	0/0	4	1	0	2	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0011	0/0	3	0	0	3	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0012	0/0	3	0	1	0	2	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0013	1/0	3	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0014	0/0	2	0	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0015	0/0	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0016	0/0	2	0	1	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0017	0/0	2	1	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0018	0/0	2	0	0	1	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0019	0/0	2	0	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0020	0/0	2	1	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0021	0/0	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0022	0/0	2	0	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0023	0/0	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0024	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0025	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0026	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0027	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0028	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0029	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0030	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0031	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0032	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0033	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0034	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0035	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0036	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0037	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0038	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0039	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0040	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0041	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0042	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0043	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0044	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0045	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0046	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0047	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0048	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0049	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0050	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0051	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0052	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0053	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0054	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0055	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0056	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0057	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0058	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0059	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0060	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0061	0/0	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0062	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0063	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0064	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0065	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0066	0/0	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
g0067	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	4032	54	8	13	24	3	6	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0001c0007	0/0	4032	3	1	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0001c0026	0/0	4032	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0001c0027	0/0	4032	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0002c0002	0/1	4032	35	2	16	9	1	6	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0002c0028	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0002c0029	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0002c0033	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0003c0003	1/0	4032	26	5	3	8	5	4	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0003c0030	0/0	4032	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0004c0004	0/0	4032	9	0	1	8	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0005c0005	0/0	4044	6	0	0	6	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0006c0008	0/0	4032	3	3	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0006c0014	0/0	4032	2	0	0	0	0	2	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0007c0006	0/0	4032	4	4	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0008c0015	0/0	4032	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0009c0013	0/0	4032	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0010c0012	0/0	4032	2	0	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0011c0010	0/0	4032	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0012c0009	0/0	4032	2	0	2	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0013c0011	0/0	4032	2	1	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0014c0040	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0015c0041	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0016c0034	0/0	4044	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0017c0036	0/0	4044	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0018c0035	0/0	4044	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0019c0032	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0020c0025	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0021c0024	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0022c0021	0/0	4032	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0023c0022	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0024c0023	0/0	4032	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0025c0016	0/0	4032	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0026c0020	0/0	4032	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0027c0042	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0028c0018	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0029c0019	0/0	4032	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0030c0031	0/0	4032	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0031c0017	0/0	4032	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0032c0037	0/0	4032	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0033c0038	0/0	4044	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0034c0043	0/0	4044	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0035c0039	0/0	4032	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	4214	54	8	13	24	3	6	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0001c0007t0001	0/0	4214	3	1	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0001c0026t0001	0/0	4214	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0001c0027t0001	0/0	4214	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0002c0002t0002	0/1	4214	35	2	16	9	1	6	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0002c0028t0002	0/0	4214	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0002c0029t0002	0/0	4214	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0002c0033t0002	0/0	4214	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0003c0003t0002	1/0	4214	16	4	1	4	3	3	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0003c0003t0003	0/0	4214	9	1	1	4	2	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0003c0003t0008	0/0	4214	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0003c0030t0002	0/0	4214	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0004c0004t0001	0/0	4214	9	0	1	8	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0005c0005t0004	0/0	4226	6	0	0	6	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0006c0008t0003	0/0	4214	3	3	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0006c0014t0002	0/0	4214	2	0	0	0	0	2	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0007c0006t0002	0/0	4214	3	3	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0007c0006t0003	0/0	4214	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0008c0015t0002	0/0	4214	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0008c0015t0012	0/0	4214	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0009c0013t0003	0/0	4214	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0010c0012t0002	0/0	4214	2	0	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0011c0010t0002	0/0	4214	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0012c0009t0002	0/0	4214	2	0	2	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0013c0011t0003	0/0	4214	2	1	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0014c0040t0002	0/0	4214	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0015c0041t0003	0/0	4214	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0016c0034t0004	0/0	4226	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0017c0036t0005	0/0	4226	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0018c0035t0005	0/0	4226	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0019c0032t0002	0/0	4214	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0020c0025t0001	0/0	4214	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0021c0024t0001	0/0	4214	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0022c0021t0001	0/0	4214	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0023c0022t0001	0/0	4214	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0024c0023t0001	0/0	4214	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0025c0016t0001	0/0	4214	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0026c0020t0001	0/0	4214	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0027c0042t0006	0/0	4214	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0028c0018t0009	0/0	4214	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0029c0019t0006	0/0	4214	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0030c0031t0007	0/0	4214	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0031c0017t0001	0/0	4214	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0032c0037t0001	0/0	4214	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0033c0038t0011	0/0	4226	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0034c0043t0010	0/0	4226	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887
a0035c0039t0001	0/0	4214	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	copy fasta	chr9	42178659	42194887

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	14	0	2	10	0	2	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0003	0/0	18	3	7	5	0	3	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0007	0/0	2	0	2	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0008	0/0	4	1	0	2	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0009	0/0	4	1	1	1	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0010	0/0	3	1	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0022	0/0	2	0	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0033	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0058	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0060	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0061	0/0	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0062	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0063	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0001t0001g0064	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0007t0001g0001	0/0	3	1	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0026t0001g0003	0/0	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0001c0027t0001g0007	0/0	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0002c0002t0002g0002	0/1	22	1	9	4	1	6	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0002c0002t0002g0005	0/0	5	0	3	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0002c0002t0002g0006	0/0	4	1	2	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0002c0002t0002g0042	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0002c0002t0002g0051	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0002c0002t0002g0056	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0002c0002t0002g0065	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0002c0028t0002g0005	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0002c0029t0002g0006	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0002c0033t0002g0055	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0004	0/0	3	0	0	2	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0012	0/0	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0013	1/0	2	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0017	0/0	2	1	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0018	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0020	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0039	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0045	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0048	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0053	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0066	0/0	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0002g0067	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0003g0004	0/0	2	0	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0003g0016	0/0	2	0	1	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0003g0018	0/0	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0003g0019	0/0	2	0	0	2	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0003g0044	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0003g0046	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0003t0008g0012	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0003c0030t0002g0012	0/0	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0004c0004t0001g0001	0/0	7	0	0	7	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0004c0004t0001g0034	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0004c0004t0001g0059	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0005c0005t0004g0011	0/0	3	0	0	3	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0005c0005t0004g0025	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0005c0005t0004g0026	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0005c0005t0004g0028	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0006c0008t0003g0015	0/0	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0006c0008t0003g0030	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0006c0014t0002g0052	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0006c0014t0002g0054	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0007c0006t0002g0035	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0007c0006t0002g0036	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0007c0006t0002g0037	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0007c0006t0003g0049	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0008c0015t0002g0040	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0008c0015t0012g0024	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0009c0013t0003g0021	0/0	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0010c0012t0002g0020	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0010c0012t0002g0047	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0011c0010t0002g0023	0/0	2	2	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0012c0009t0002g0002	0/0	2	0	2	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0013c0011t0003g0002	0/0	2	1	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0014c0040t0002g0041	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0015c0041t0003g0050	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0016c0034t0004g0027	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0017c0036t0005g0014	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0018c0035t0005g0014	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0019c0032t0002g0013	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0020c0025t0001g0003	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0021c0024t0001g0007	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0022c0021t0001g0057	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0023c0022t0001g0003	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0024c0023t0001g0010	0/0	1	0	0	0	1	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0025c0016t0001g0001	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0026c0020t0001g0001	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0027c0042t0006g0038	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0028c0018t0009g0043	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0029c0019t0006g0032	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0030c0031t0007g0004	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0031c0017t0001g0003	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0032c0037t0001g0001	0/0	1	0	0	1	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0033c0038t0011g0029	0/0	1	1	0	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0034c0043t0010g0031	0/0	1	0	1	0	0	0	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
a0035c0039t0001g0007	0/0	1	0	0	0	0	1	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0024	c0023	t0001	g0010	EUR	GBR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00099	hp2	a0003	c0003	t0002	g0004	EUR	GBR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00140	hp1	a0003	c0003	t0003	g0016	EUR	GBR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00140	hp2	a0013	c0011	t0003	g0002	EUR	GBR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00280	hp1	a0001	c0027	t0001	g0007	EUR	FIN	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00280	hp2	a0003	c0003	t0002	g0066	EUR	FIN	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00323	hp1	a0002	c0002	t0002	g0002	EUR	FIN	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00323	hp2	a0003	c0003	t0003	g0018	EUR	FIN	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00423	hp1	a0001	c0001	t0001	g0008	EAS	CHS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00423	hp2	a0003	c0003	t0003	g0004	EAS	CHS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00438	hp2	a0001	c0001	t0001	g0022	EAS	CHS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00558	hp1	a0003	c0003	t0003	g0004	EAS	CHS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00597	hp1	a0001	c0001	t0001	g0022	EAS	CHS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00597	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00639	hp1	a0002	c0002	t0002	g0002	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00639	hp2	a0001	c0001	t0001	g0003	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00642	hp2	a0003	c0003	t0003	g0016	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00735	hp1	a0002	c0033	t0002	g0055	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00735	hp2	a0001	c0001	t0001	g0007	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00741	hp1	a0002	c0002	t0002	g0002	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG00741	hp2	a0002	c0002	t0002	g0005	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01071	hp1	a0002	c0002	t0002	g0002	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01071	hp2	a0001	c0001	t0001	g0003	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01081	hp1	a0001	c0001	t0001	g0060	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01081	hp2	a0002	c0002	t0002	g0006	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01099	hp1	a0001	c0001	t0001	g0003	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01099	hp2	a0002	c0002	t0002	g0002	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01109	hp1	a0001	c0001	t0001	g0007	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01109	hp2	a0002	c0002	t0002	g0005	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01175	hp1	a0003	c0003	t0002	g0067	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01175	hp2	a0034	c0043	t0010	g0031	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01192	hp1	a0020	c0025	t0001	g0003	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01192	hp2	a0002	c0002	t0002	g0006	AMR	PUR	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01255	hp1	a0001	c0001	t0001	g0003	AMR	CLM	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01255	hp2	a0002	c0002	t0002	g0051	AMR	CLM	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01346	hp1	a0021	c0024	t0001	g0007	AMR	CLM	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01346	hp2	a0001	c0001	t0001	g0003	AMR	CLM	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01433	hp1	a0002	c0002	t0002	g0002	AMR	CLM	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01433	hp2	a0002	c0028	t0002	g0005	AMR	CLM	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01516	hp1	a0003	c0030	t0002	g0012	EUR	IBS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01516	hp2	a0001	c0026	t0001	g0003	EUR	IBS	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01891	hp1	a0001	c0007	t0001	g0001	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01891	hp2	a0006	c0008	t0003	g0030	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01934	hp1	a0002	c0002	t0002	g0002	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01934	hp2	a0003	c0003	t0008	g0012	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01943	hp1	a0002	c0002	t0002	g0002	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01943	hp2	a0004	c0004	t0001	g0059	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01952	hp1	a0031	c0017	t0001	g0003	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01952	hp2	a0002	c0002	t0002	g0005	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01993	hp1	a0012	c0009	t0002	g0002	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG01993	hp2	a0012	c0009	t0002	g0002	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02004	hp1	a0001	c0001	t0001	g0003	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02004	hp2	a0001	c0001	t0001	g0003	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02040	hp1	a0001	c0001	t0001	g0003	EAS	KHV	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02040	hp2	a0001	c0001	t0001	g0003	EAS	KHV	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02055	hp1	a0009	c0013	t0003	g0021	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02055	hp2	a0006	c0008	t0003	g0015	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02056	hp1	a0003	c0003	t0002	g0004	EAS	KHV	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02056	hp2	a0001	c0001	t0001	g0008	EAS	KHV	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02083	hp1	a0002	c0002	t0002	g0042	EAS	KHV	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02083	hp2	a0004	c0004	t0001	g0001	EAS	KHV	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02135	hp1	a0002	c0002	t0002	g0005	EAS	KHV	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02135	hp2	a0032	c0037	t0001	g0001	EAS	KHV	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02145	hp1	a0002	c0002	t0002	g0002	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02145	hp2	a0001	c0001	t0001	g0063	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02148	hp1	a0002	c0002	t0002	g0056	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02148	hp2	a0002	c0002	t0002	g0002	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02258	hp1	a0019	c0032	t0002	g0013	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02258	hp2	a0013	c0011	t0003	g0002	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02273	hp1	a0001	c0001	t0001	g0009	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02273	hp2	a0002	c0002	t0002	g0002	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02300	hp1	a0023	c0022	t0001	g0003	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02300	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02572	hp1	a0002	c0029	t0002	g0006	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02572	hp2	a0007	c0006	t0002	g0037	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02615	hp1	a0001	c0001	t0001	g0009	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02615	hp2	a0001	c0001	t0001	g0010	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02622	hp1	a0014	c0040	t0002	g0041	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02622	hp2	a0027	c0042	t0006	g0038	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02717	hp1	a0003	c0003	t0002	g0017	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02717	hp2	a0001	c0001	t0001	g0003	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02738	hp1	a0003	c0003	t0002	g0048	SAS	PJL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02738	hp2	a0002	c0002	t0002	g0002	SAS	PJL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02897	hp1	a0001	c0001	t0001	g0003	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02897	hp2	a0006	c0008	t0003	g0015	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02922	hp1	a0003	c0003	t0002	g0013	AFR	ESN	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02922	hp2	a0009	c0013	t0003	g0021	AFR	ESN	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03041	hp1	a0008	c0015	t0002	g0040	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03041	hp2	a0011	c0010	t0002	g0023	AFR	GWD	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03195	hp1	a0003	c0003	t0003	g0046	AFR	ESN	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03195	hp2	a0003	c0003	t0002	g0020	AFR	ESN	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03239	hp2	a0003	c0003	t0003	g0044	SAS	PJL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03486	hp1	a0003	c0003	t0002	g0053	AFR	MSL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03486	hp2	a0008	c0015	t0012	g0024	AFR	MSL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03490	hp1	a0025	c0016	t0001	g0001	SAS	PJL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03490	hp2	a0016	c0034	t0004	g0027	SAS	PJL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03516	hp1	a0007	c0006	t0002	g0036	AFR	ESN	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03516	hp2	a0001	c0001	t0001	g0008	AFR	ESN	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03669	hp1	a0002	c0002	t0002	g0002	SAS	PJL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03669	hp2	a0001	c0001	t0001	g0003	SAS	PJL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03710	hp2	a0003	c0003	t0002	g0039	SAS	PJL	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03831	hp1	a0001	c0001	t0001	g0062	SAS	BEB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03831	hp2	a0002	c0002	t0002	g0002	SAS	BEB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03834	hp1	a0002	c0002	t0002	g0002	SAS	BEB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03834	hp2	a0035	c0039	t0001	g0007	SAS	BEB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03942	hp1	a0022	c0021	t0001	g0057	SAS	BEB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG03942	hp2	a0002	c0002	t0002	g0002	SAS	BEB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG04115	hp1	a0001	c0001	t0001	g0003	SAS	STU	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG04115	hp2	a0002	c0002	t0002	g0002	SAS	STU	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG04228	hp1	a0006	c0014	t0002	g0054	SAS	STU	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG04228	hp2	a0006	c0014	t0002	g0052	SAS	STU	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18612	hp1	a0002	c0002	t0002	g0065	EAS	CHB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18612	hp2	a0002	c0002	t0002	g0005	EAS	CHB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18747	hp2	a0003	c0003	t0002	g0045	EAS	CHB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18947	hp1	a0001	c0007	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18947	hp2	a0001	c0001	t0001	g0003	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18951	hp1	a0001	c0001	t0001	g0033	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18951	hp2	a0003	c0003	t0002	g0018	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18954	hp1	a0003	c0003	t0003	g0019	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18954	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18966	hp1	a0002	c0002	t0002	g0002	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18966	hp2	a0001	c0001	t0001	g0009	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18967	hp1	a0003	c0003	t0003	g0019	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18967	hp2	a0026	c0020	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18970	hp1	a0001	c0001	t0001	g0058	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18970	hp2	a0030	c0031	t0007	g0004	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18973	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18973	hp2	a0001	c0007	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18974	hp1	a0002	c0002	t0002	g0006	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18974	hp2	a0004	c0004	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18979	hp1	a0010	c0012	t0002	g0020	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18979	hp2	a0003	c0003	t0002	g0004	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18980	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18980	hp2	a0001	c0001	t0001	g0010	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18998	hp1	a0002	c0002	t0002	g0002	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA18998	hp2	a0010	c0012	t0002	g0047	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19000	hp1	a0004	c0004	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19000	hp2	a0005	c0005	t0004	g0026	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19004	hp2	a0005	c0005	t0004	g0025	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19030	hp1	a0007	c0006	t0003	g0049	AFR	LWK	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19030	hp2	a0029	c0019	t0006	g0032	AFR	LWK	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19056	hp1	a0018	c0035	t0005	g0014	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19056	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19057	hp1	a0004	c0004	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19057	hp2	a0017	c0036	t0005	g0014	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19068	hp1	a0004	c0004	t0001	g0034	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19068	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19070	hp1	a0005	c0005	t0004	g0011	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19070	hp2	a0004	c0004	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19074	hp1	a0004	c0004	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19074	hp2	a0005	c0005	t0004	g0028	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19086	hp1	a0005	c0005	t0004	g0011	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19086	hp2	a0002	c0002	t0002	g0002	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19087	hp1	a0004	c0004	t0001	g0001	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19087	hp2	a0002	c0002	t0002	g0002	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19090	hp1	a0005	c0005	t0004	g0011	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA19090	hp2	a0001	c0001	t0001	g0010	EAS	JPT	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA20129	hp1	a0033	c0038	t0011	g0029	AFR	ASW	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA20129	hp2	a0001	c0001	t0001	g0003	AFR	ASW	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA20752	hp1	a0003	c0003	t0002	g0012	EUR	TSI	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA20752	hp2	a0001	c0001	t0001	g0008	EUR	TSI	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA20805	hp1	a0001	c0001	t0001	g0009	EUR	TSI	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA20805	hp2	a0001	c0001	t0001	g0061	EUR	TSI	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA20905	hp1	a0003	c0003	t0002	g0017	SAS	GIH	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
NA20905	hp2	a0001	c0001	t0001	g0003	SAS	GIH	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02109	hp1	a0015	c0041	t0003	g0050	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02109	hp2	a0002	c0002	t0002	g0006	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02486	hp1	a0028	c0018	t0009	g0043	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02486	hp2	a0001	c0001	t0001	g0064	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02559	hp1	a0011	c0010	t0002	g0023	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
HG02559	hp2	a0007	c0006	t0002	g0035	AFR	ACB	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
homoSapiens_chm13v2	hp1	a0002	c0002	t0002	g0002	REF	REF	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887
homoSapiens_grch38	hp1	a0003	c0003	t0002	g0013	REF	REF	SPATA31A6_chr9_42178659_42194887	SPATA31A6	chr9	42178659	42194887

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr9:42183752	C C	T T	3	a0008 a0014 a0015 a0008 a0014 a0015	4	HG02109.hp1 HG02622.hp1 HG03041.hp1 others(1): Show HG02109.hp1 HG02622.hp1 HG03041.hp1 HG03486.hp2	missense_variant	MODERATE	c.65C>T c.65C>T	p.Thr22Ile p.Thr22Ile	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/4	94/4214	65/4032	22/1343	chr9	42183752
chr9:42183797	G G	T T	1	a0035 a0035	1	HG03834.hp2 HG03834.hp2	missense_variant	MODERATE	c.110G>T c.110G>T	p.Gly37Val p.Gly37Val	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/4	139/4214	110/4032	37/1343	chr9	42183797
chr9:42183836	A A	C C	1	a0032 a0032	1	HG02135.hp2 HG02135.hp2	missense_variant	MODERATE	c.149A>C c.149A>C	p.His50Pro p.His50Pro	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/4	178/4214	149/4032	50/1343	chr9	42183836
chr9:42183836	A A	G G	3	a0006 a0033 a0034 a0006 a0033 a0034	7	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(4): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 HG04228.hp1 HG04228.hp2 NA20129.hp1	missense_variant	MODERATE	c.149A>G c.149A>G	p.His50Arg p.His50Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/4	178/4214	149/4032	50/1343	chr9	42183836
chr9:42185710	C C	G G	1	a0034 a0034	1	HG01175.hp2 HG01175.hp2	missense_variant	MODERATE	c.263C>G c.263C>G	p.Pro88Arg p.Pro88Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	3/4	292/4214	263/4032	88/1343	chr9	42185710
chr9:42185710	C C	T T	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.263C>T c.263C>T	p.Pro88Leu p.Pro88Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	3/4	292/4214	263/4032	88/1343	chr9	42185710
chr9:42186078	G G	T T	1	a0019 a0019	1	HG02258.hp1 HG02258.hp1	missense_variant	MODERATE	c.376G>T c.376G>T	p.Val126Leu p.Val126Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	405/4214	376/4032	126/1343	chr9	42186078
chr9:42186084	G G	A A	1	a0031 a0031	1	HG01952.hp1 HG01952.hp1	missense_variant	MODERATE	c.382G>A c.382G>A	p.Glu128Lys p.Glu128Lys	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	411/4214	382/4032	128/1343	chr9	42186084
chr9:42186134	T T	G G	4	a0002 a0011 a0012 others(1): Show a0002 a0011 a0012 a0013	44	HG00140.hp2 HG00323.hp1 HG00639.hp1 others(41): Show HG00140.hp2 HG00323.hp1 HG00639.hp1 HG00735.hp1 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01081.hp2 HG01099.hp2 HG01109.hp2 HG01192.hp2 HG01255.hp2 HG01433.hp1 HG01433.hp2 HG01934.hp1 HG01943.hp1 HG01952.hp2 HG01993.hp1 HG01993.hp2 HG02083.hp1 HG02109.hp2 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02258.hp2 HG02273.hp2 HG02559.hp1 HG02572.hp1 HG02738.hp2 HG03041.hp2 HG03669.hp1 HG03831.hp2 HG03834.hp1 HG03942.hp2 HG04115.hp2 NA18612.hp1 NA18612.hp2 NA18966.hp1 NA18974.hp1 NA18998.hp1 NA19086.hp2 NA19087.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.432T>G c.432T>G	p.Asp144Glu p.Asp144Glu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	461/4214	432/4032	144/1343	chr9	42186134
chr9:42186154	C C	A A	1	a0010 a0010	2	NA18979.hp1 NA18998.hp2 NA18979.hp1 NA18998.hp2	missense_variant	MODERATE	c.452C>A c.452C>A	p.Pro151Gln p.Pro151Gln	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	481/4214	452/4032	151/1343	chr9	42186154
chr9:42186154	C C	T T	12	a0001 a0004 a0020 others(9): Show a0001 a0004 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0031 a0032 a0035	78	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(75): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19004.hp1 NA19056.hp2 NA19057.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	missense_variant	MODERATE	c.452C>T c.452C>T	p.Pro151Leu p.Pro151Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	481/4214	452/4032	151/1343	chr9	42186154
chr9:42186166	C C	T T	1	a0027 a0027	1	HG02622.hp2 HG02622.hp2	missense_variant	MODERATE	c.464C>T c.464C>T	p.Pro155Leu p.Pro155Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	493/4214	464/4032	155/1343	chr9	42186166
chr9:42186295	C C	T T	1	a0020 a0020	1	HG01192.hp1 HG01192.hp1	missense_variant	MODERATE	c.593C>T c.593C>T	p.Pro198Leu p.Pro198Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	622/4214	593/4032	198/1343	chr9	42186295
chr9:42186355	C C	A A	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.653C>A c.653C>A	p.Pro218Gln p.Pro218Gln	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	682/4214	653/4032	218/1343	chr9	42186355
chr9:42186355	C C	T T	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.653C>T c.653C>T	p.Pro218Leu p.Pro218Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	682/4214	653/4032	218/1343	chr9	42186355
chr9:42186390	C C	T T	3	a0008 a0014 a0015 a0008 a0014 a0015	4	HG02109.hp1 HG02622.hp1 HG03041.hp1 others(1): Show HG02109.hp1 HG02622.hp1 HG03041.hp1 HG03486.hp2	missense_variant	MODERATE	c.688C>T c.688C>T	p.Arg230Trp p.Arg230Trp	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	717/4214	688/4032	230/1343	chr9	42186390
chr9:42186435	C C	T T	1	a0033 a0033	1	NA20129.hp1 NA20129.hp1	missense_variant	MODERATE	c.733C>T c.733C>T	p.Leu245Phe p.Leu245Phe	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	762/4214	733/4032	245/1343	chr9	42186435
chr9:42186450	G G	A A	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.748G>A c.748G>A	p.Val250Ile p.Val250Ile	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	777/4214	748/4032	250/1343	chr9	42186450
chr9:42186474	G G	A A	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.772G>A c.772G>A	p.Glu258Lys p.Glu258Lys	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	801/4214	772/4032	258/1343	chr9	42186474
chr9:42186530	T T	A A	3	a0008 a0014 a0015 a0008 a0014 a0015	4	HG02109.hp1 HG02622.hp1 HG03041.hp1 others(1): Show HG02109.hp1 HG02622.hp1 HG03041.hp1 HG03486.hp2	missense_variant	MODERATE	c.828T>A c.828T>A	p.His276Gln p.His276Gln	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	857/4214	828/4032	276/1343	chr9	42186530
chr9:42186546	C C	T T	5	a0005 a0013 a0016 others(2): Show a0005 a0013 a0016 a0017 a0018	11	HG00140.hp2 HG02258.hp2 HG03490.hp2 others(8): Show HG00140.hp2 HG02258.hp2 HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.844C>T c.844C>T	p.Arg282Trp p.Arg282Trp	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	873/4214	844/4032	282/1343	chr9	42186546
chr9:42186576	G G	A A	1	a0009 a0009	2	HG02055.hp1 HG02922.hp2 HG02055.hp1 HG02922.hp2	missense_variant	MODERATE	c.874G>A c.874G>A	p.Ala292Thr p.Ala292Thr	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	903/4214	874/4032	292/1343	chr9	42186576
chr9:42186604	C C	A A	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.902C>A c.902C>A	p.Pro301His p.Pro301His	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	931/4214	902/4032	301/1343	chr9	42186604
chr9:42186628	C C	T T	1	a0021 a0021	1	HG01346.hp1 HG01346.hp1	missense_variant	MODERATE	c.926C>T c.926C>T	p.Thr309Ile p.Thr309Ile	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	955/4214	926/4032	309/1343	chr9	42186628
chr9:42186681	G G	A A	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.979G>A c.979G>A	p.Val327Ile p.Val327Ile	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1008/4214	979/4032	327/1343	chr9	42186681
chr9:42186714	G G	T T	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.1012G>T c.1012G>T	p.Val338Phe p.Val338Phe	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1041/4214	1012/4032	338/1343	chr9	42186714
chr9:42186760	A A	G G	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.1058A>G c.1058A>G	p.Gln353Arg p.Gln353Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1087/4214	1058/4032	353/1343	chr9	42186760
chr9:42186787	C C	A A	1	a0033 a0033	1	NA20129.hp1 NA20129.hp1	missense_variant	MODERATE	c.1085C>A c.1085C>A	p.Ser362Tyr p.Ser362Tyr	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1114/4214	1085/4032	362/1343	chr9	42186787
chr9:42186792	G G	C C	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.1090G>C c.1090G>C	p.Gly364Arg p.Gly364Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1119/4214	1090/4032	364/1343	chr9	42186792
chr9:42186802	C C	T T	2	a0017 a0018 a0017 a0018	2	NA19056.hp1 NA19057.hp2 NA19056.hp1 NA19057.hp2	missense_variant	MODERATE	c.1100C>T c.1100C>T	p.Ala367Val p.Ala367Val	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1129/4214	1100/4032	367/1343	chr9	42186802
chr9:42186894	T T	C C	3	a0026 a0033 a0034 a0026 a0033 a0034	3	HG01175.hp2 NA18967.hp2 NA20129.hp1 HG01175.hp2 NA18967.hp2 NA20129.hp1	missense_variant	MODERATE	c.1192T>C c.1192T>C	p.Cys398Arg p.Cys398Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1221/4214	1192/4032	398/1343	chr9	42186894
chr9:42186895	G G	T T	3	a0026 a0033 a0034 a0026 a0033 a0034	3	HG01175.hp2 NA18967.hp2 NA20129.hp1 HG01175.hp2 NA18967.hp2 NA20129.hp1	missense_variant	MODERATE	c.1193G>T c.1193G>T	p.Cys398Phe p.Cys398Phe	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1222/4214	1193/4032	398/1343	chr9	42186895
chr9:42186913	T T	G G	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.1211T>G c.1211T>G	p.Leu404Trp p.Leu404Trp	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1240/4214	1211/4032	404/1343	chr9	42186913
chr9:42186924	T T	C C	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.1222T>C c.1222T>C	p.Phe408Leu p.Phe408Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1251/4214	1222/4032	408/1343	chr9	42186924
chr9:42186945	C C	T T	2	a0005 a0017 a0005 a0017	7	NA19000.hp2 NA19004.hp2 NA19057.hp2 others(4): Show NA19000.hp2 NA19004.hp2 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.1243C>T c.1243C>T	p.Leu415Phe p.Leu415Phe	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1272/4214	1243/4032	415/1343	chr9	42186945
chr9:42186961	C C	T T	13	a0001 a0004 a0020 others(10): Show a0001 a0004 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0028 a0031 a0032 a0035	79	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(76): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19004.hp1 NA19056.hp2 NA19057.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	missense_variant	MODERATE	c.1259C>T c.1259C>T	p.Pro420Leu p.Pro420Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1288/4214	1259/4032	420/1343	chr9	42186961
chr9:42186969	C C	A A	1	a0025 a0025	1	HG03490.hp1 HG03490.hp1	missense_variant	MODERATE	c.1267C>A c.1267C>A	p.His423Asn p.His423Asn	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1296/4214	1267/4032	423/1343	chr9	42186969
chr9:42187059	G G	A A	2	a0008 a0014 a0008 a0014	3	HG02622.hp1 HG03041.hp1 HG03486.hp2 HG02622.hp1 HG03041.hp1 HG03486.hp2	missense_variant	MODERATE	c.1357G>A c.1357G>A	p.Val453Ile p.Val453Ile	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1386/4214	1357/4032	453/1343	chr9	42187059
chr9:42187113	C C	A A	1	a0012 a0012	2	HG01993.hp1 HG01993.hp2 HG01993.hp1 HG01993.hp2	missense_variant	MODERATE	c.1411C>A c.1411C>A	p.Pro471Thr p.Pro471Thr	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1440/4214	1411/4032	471/1343	chr9	42187113
chr9:42187117	T T	C C	1	a0033 a0033	1	NA20129.hp1 NA20129.hp1	missense_variant	MODERATE	c.1415T>C c.1415T>C	p.Leu472Pro p.Leu472Pro	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1444/4214	1415/4032	472/1343	chr9	42187117
chr9:42187125	C C	CTGGGGCC others(5): Show CTGGGGCCCGAGT	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	disruptive_inframe_insertion	MODERATE	c.1423_1424insTGGGGC others(6): Show c.1423_1424insTGGGGCCCGAGT	p.Arg475delinsLeuGly others(9): Show p.Arg475delinsLeuGlyProGluCys	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1453/4214	1424/4032	475/1343	chr9	42187125
chr9:42187125	C C	CTGGGGCC others(5): Show CTGGGGCCTGAGT	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	disruptive_inframe_insertion	MODERATE	c.1423_1424insTGGGGC others(6): Show c.1423_1424insTGGGGCCTGAGT	p.Arg475delinsLeuGly others(9): Show p.Arg475delinsLeuGlyProGluCys	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1453/4214	1424/4032	475/1343	chr9	42187125
chr9:42187146	A A	T T	1	a0029 a0029	1	NA19030.hp2 NA19030.hp2	missense_variant	MODERATE	c.1444A>T c.1444A>T	p.Thr482Ser p.Thr482Ser	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1473/4214	1444/4032	482/1343	chr9	42187146
chr9:42187159	T T	G G	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.1457T>G c.1457T>G	p.Leu486Arg p.Leu486Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1486/4214	1457/4032	486/1343	chr9	42187159
chr9:42187245	A A	C C	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.1543A>C c.1543A>C	p.Lys515Gln p.Lys515Gln	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1572/4214	1543/4032	515/1343	chr9	42187245
chr9:42187339	A A	G G	6	a0005 a0016 a0017 others(3): Show a0005 a0016 a0017 a0018 a0033 a0034	11	HG01175.hp2 HG03490.hp2 NA19000.hp2 others(8): Show HG01175.hp2 HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1 NA20129.hp1	missense_variant	MODERATE	c.1637A>G c.1637A>G	p.Lys546Arg p.Lys546Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1666/4214	1637/4032	546/1343	chr9	42187339
chr9:42187374	G G	T T	1	a0004 a0004	9	HG01943.hp2 HG02083.hp2 NA18974.hp2 others(6): Show HG01943.hp2 HG02083.hp2 NA18974.hp2 NA19000.hp1 NA19057.hp1 NA19068.hp1 NA19070.hp2 NA19074.hp1 NA19087.hp1	missense_variant	MODERATE	c.1672G>T c.1672G>T	p.Val558Phe p.Val558Phe	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1701/4214	1672/4032	558/1343	chr9	42187374
chr9:42187506	T T	G G	2	a0007 a0009 a0007 a0009	6	HG02055.hp1 HG02559.hp2 HG02572.hp2 others(3): Show HG02055.hp1 HG02559.hp2 HG02572.hp2 HG02922.hp2 HG03516.hp1 NA19030.hp1	missense_variant	MODERATE	c.1804T>G c.1804T>G	p.Trp602Gly p.Trp602Gly	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1833/4214	1804/4032	602/1343	chr9	42187506
chr9:42187569	C C	G G	3	a0002 a0012 a0013 a0002 a0012 a0013	42	HG00140.hp2 HG00323.hp1 HG00639.hp1 others(39): Show HG00140.hp2 HG00323.hp1 HG00639.hp1 HG00735.hp1 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01081.hp2 HG01099.hp2 HG01109.hp2 HG01192.hp2 HG01255.hp2 HG01433.hp1 HG01433.hp2 HG01934.hp1 HG01943.hp1 HG01952.hp2 HG01993.hp1 HG01993.hp2 HG02083.hp1 HG02109.hp2 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02258.hp2 HG02273.hp2 HG02572.hp1 HG02738.hp2 HG03669.hp1 HG03831.hp2 HG03834.hp1 HG03942.hp2 HG04115.hp2 NA18612.hp1 NA18612.hp2 NA18966.hp1 NA18974.hp1 NA18998.hp1 NA19086.hp2 NA19087.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.1867C>G c.1867C>G	p.Arg623Gly p.Arg623Gly	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1896/4214	1867/4032	623/1343	chr9	42187569
chr9:42187575	G G	A A	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.1873G>A c.1873G>A	p.Glu625Lys p.Glu625Lys	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1902/4214	1873/4032	625/1343	chr9	42187575
chr9:42187630	C C	T T	21	a0001 a0004 a0005 others(18): Show a0001 a0004 a0005 a0016 a0017 a0018 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027 a0028 a0029 a0031 a0032 a0033 a0034 a0035	92	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(89): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03490.hp2 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19030.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19086.hp1 NA19087.hp1 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	missense_variant	MODERATE	c.1928C>T c.1928C>T	p.Thr643Met p.Thr643Met	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1957/4214	1928/4032	643/1343	chr9	42187630
chr9:42187690	T T	C C	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.1988T>C c.1988T>C	p.Leu663Pro p.Leu663Pro	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2017/4214	1988/4032	663/1343	chr9	42187690
chr9:42187762	G G	A A	1	a0034 a0034	1	HG01175.hp2 HG01175.hp2	missense_variant	MODERATE	c.2060G>A c.2060G>A	p.Arg687Gln p.Arg687Gln	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2089/4214	2060/4032	687/1343	chr9	42187762
chr9:42187792	C C	T T	1	a0033 a0033	1	NA20129.hp1 NA20129.hp1	missense_variant	MODERATE	c.2090C>T c.2090C>T	p.Ser697Leu p.Ser697Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2119/4214	2090/4032	697/1343	chr9	42187792
chr9:42187837	A A	G G	1	a0024 a0024	1	HG00099.hp1 HG00099.hp1	missense_variant	MODERATE	c.2135A>G c.2135A>G	p.Asp712Gly p.Asp712Gly	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2164/4214	2135/4032	712/1343	chr9	42187837
chr9:42187879	T T	G G	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.2177T>G c.2177T>G	p.Leu726Arg p.Leu726Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2206/4214	2177/4032	726/1343	chr9	42187879
chr9:42187935	C C	T T	1	a0033 a0033	1	NA20129.hp1 NA20129.hp1	missense_variant	MODERATE	c.2233C>T c.2233C>T	p.Arg745Cys p.Arg745Cys	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2262/4214	2233/4032	745/1343	chr9	42187935
chr9:42187941	C C	T T	1	a0011 a0011	2	HG02559.hp1 HG03041.hp2 HG02559.hp1 HG03041.hp2	missense_variant	MODERATE	c.2239C>T c.2239C>T	p.Arg747Cys p.Arg747Cys	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2268/4214	2239/4032	747/1343	chr9	42187941
chr9:42187942	G G	T T	1	a0022 a0022	1	HG03942.hp1 HG03942.hp1	missense_variant	MODERATE	c.2240G>T c.2240G>T	p.Arg747Leu p.Arg747Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2269/4214	2240/4032	747/1343	chr9	42187942
chr9:42187971	C C	T T	1	a0011 a0011	2	HG02559.hp1 HG03041.hp2 HG02559.hp1 HG03041.hp2	missense_variant	MODERATE	c.2269C>T c.2269C>T	p.Leu757Phe p.Leu757Phe	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2298/4214	2269/4032	757/1343	chr9	42187971
chr9:42188181	G G	T T	2	a0027 a0029 a0027 a0029	2	HG02622.hp2 NA19030.hp2 HG02622.hp2 NA19030.hp2	missense_variant	MODERATE	c.2479G>T c.2479G>T	p.Val827Phe p.Val827Phe	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2508/4214	2479/4032	827/1343	chr9	42188181
chr9:42188191	T T	A A	1	a0030 a0030	1	NA18970.hp2 NA18970.hp2	stop_gained	HIGH	c.2489T>A c.2489T>A	p.Leu830* p.Leu830*	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2518/4214	2489/4032	830/1343	chr9	42188191
chr9:42188192	G G	C C	1	a0030 a0030	1	NA18970.hp2 NA18970.hp2	missense_variant	MODERATE	c.2490G>C c.2490G>C	p.Leu830Phe p.Leu830Phe	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2519/4214	2490/4032	830/1343	chr9	42188192
chr9:42188193	T T	A A	1	a0030 a0030	1	NA18970.hp2 NA18970.hp2	missense_variant	MODERATE	c.2491T>A c.2491T>A	p.Ser831Thr p.Ser831Thr	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2520/4214	2491/4032	831/1343	chr9	42188193
chr9:42188196	C C	G G	1	a0030 a0030	1	NA18970.hp2 NA18970.hp2	missense_variant	MODERATE	c.2494C>G c.2494C>G	p.Leu832Val p.Leu832Val	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2523/4214	2494/4032	832/1343	chr9	42188196
chr9:42188197	T T	C C	1	a0030 a0030	1	NA18970.hp2 NA18970.hp2	missense_variant	MODERATE	c.2495T>C c.2495T>C	p.Leu832Pro p.Leu832Pro	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2524/4214	2495/4032	832/1343	chr9	42188197
chr9:42188200	C C	G G	1	a0030 a0030	1	NA18970.hp2 NA18970.hp2	missense_variant	MODERATE	c.2498C>G c.2498C>G	p.Thr833Arg p.Thr833Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2527/4214	2498/4032	833/1343	chr9	42188200
chr9:42188206	T T	A A	1	a0030 a0030	1	NA18970.hp2 NA18970.hp2	missense_variant	MODERATE	c.2504T>A c.2504T>A	p.Leu835His p.Leu835His	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2533/4214	2504/4032	835/1343	chr9	42188206
chr9:42188349	G G	A A	3	a0008 a0014 a0015 a0008 a0014 a0015	4	HG02109.hp1 HG02622.hp1 HG03041.hp1 others(1): Show HG02109.hp1 HG02622.hp1 HG03041.hp1 HG03486.hp2	missense_variant	MODERATE	c.2647G>A c.2647G>A	p.Ala883Thr p.Ala883Thr	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2676/4214	2647/4032	883/1343	chr9	42188349
chr9:42188385	C C	A A	1	a0023 a0023	1	HG02300.hp1 HG02300.hp1	missense_variant	MODERATE	c.2683C>A c.2683C>A	p.Pro895Thr p.Pro895Thr	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2712/4214	2683/4032	895/1343	chr9	42188385
chr9:42188416	G G	A A	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.2714G>A c.2714G>A	p.Gly905Glu p.Gly905Glu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2743/4214	2714/4032	905/1343	chr9	42188416
chr9:42188494	C C	T T	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.2792C>T c.2792C>T	p.Thr931Ile p.Thr931Ile	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2821/4214	2792/4032	931/1343	chr9	42188494
chr9:42188692	G G	C C	1	a0029 a0029	1	NA19030.hp2 NA19030.hp2	missense_variant	MODERATE	c.2990G>C c.2990G>C	p.Arg997Thr p.Arg997Thr	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3019/4214	2990/4032	997/1343	chr9	42188692
chr9:42188722	G G	A A	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.3020G>A c.3020G>A	p.Ser1007Asn p.Ser1007Asn	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3049/4214	3020/4032	1007/1343	chr9	42188722
chr9:42188750	G G	C C	2	a0027 a0029 a0027 a0029	2	HG02622.hp2 NA19030.hp2 HG02622.hp2 NA19030.hp2	missense_variant	MODERATE	c.3048G>C c.3048G>C	p.Lys1016Asn p.Lys1016Asn	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3077/4214	3048/4032	1016/1343	chr9	42188750
chr9:42188800	G G	C C	1	a0029 a0029	1	NA19030.hp2 NA19030.hp2	missense_variant	MODERATE	c.3098G>C c.3098G>C	p.Gly1033Ala p.Gly1033Ala	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3127/4214	3098/4032	1033/1343	chr9	42188800
chr9:42188945	A A	C C	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.3243A>C c.3243A>C	p.Gln1081His p.Gln1081His	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3272/4214	3243/4032	1081/1343	chr9	42188945
chr9:42189006	C C	T T	1	a0034 a0034	1	HG01175.hp2 HG01175.hp2	missense_variant	MODERATE	c.3304C>T c.3304C>T	p.Pro1102Ser p.Pro1102Ser	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3333/4214	3304/4032	1102/1343	chr9	42189006
chr9:42189007	C C	T T	12	a0001 a0004 a0020 others(9): Show a0001 a0004 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0031 a0032 a0035	78	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(75): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19004.hp1 NA19056.hp2 NA19057.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	missense_variant	MODERATE	c.3305C>T c.3305C>T	p.Pro1102Leu p.Pro1102Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3334/4214	3305/4032	1102/1343	chr9	42189007
chr9:42189130	G G	A A	1	a0014 a0014	1	HG02622.hp1 HG02622.hp1	missense_variant	MODERATE	c.3428G>A c.3428G>A	p.Gly1143Asp p.Gly1143Asp	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3457/4214	3428/4032	1143/1343	chr9	42189130
chr9:42189175	A A	C C	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.3473A>C c.3473A>C	p.His1158Pro p.His1158Pro	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3502/4214	3473/4032	1158/1343	chr9	42189175
chr9:42189198	T T	A A	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.3496T>A c.3496T>A	p.Phe1166Ile p.Phe1166Ile	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3525/4214	3496/4032	1166/1343	chr9	42189198
chr9:42189282	T T	C C	2	a0033 a0034 a0033 a0034	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	missense_variant	MODERATE	c.3580T>C c.3580T>C	p.Cys1194Arg p.Cys1194Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3609/4214	3580/4032	1194/1343	chr9	42189282
chr9:42189345	A A	G G	6	a0005 a0016 a0017 others(3): Show a0005 a0016 a0017 a0018 a0033 a0034	11	HG01175.hp2 HG03490.hp2 NA19000.hp2 others(8): Show HG01175.hp2 HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1 NA20129.hp1	missense_variant	MODERATE	c.3643A>G c.3643A>G	p.Lys1215Glu p.Lys1215Glu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3672/4214	3643/4032	1215/1343	chr9	42189345
chr9:42189370	A A	G G	6	a0005 a0016 a0017 others(3): Show a0005 a0016 a0017 a0018 a0033 a0034	11	HG01175.hp2 HG03490.hp2 NA19000.hp2 others(8): Show HG01175.hp2 HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1 NA20129.hp1	missense_variant	MODERATE	c.3668A>G c.3668A>G	p.His1223Arg p.His1223Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3697/4214	3668/4032	1223/1343	chr9	42189370
chr9:42189424	G G	A A	1	a0029 a0029	1	NA19030.hp2 NA19030.hp2	missense_variant	MODERATE	c.3722G>A c.3722G>A	p.Gly1241Glu p.Gly1241Glu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3751/4214	3722/4032	1241/1343	chr9	42189424
chr9:42189519	G G	A A	1	a0014 a0014	1	HG02622.hp1 HG02622.hp1	missense_variant	MODERATE	c.3817G>A c.3817G>A	p.Gly1273Ser p.Gly1273Ser	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3846/4214	3817/4032	1273/1343	chr9	42189519
chr9:42189649	C C	A A	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.3947C>A c.3947C>A	p.Pro1316His p.Pro1316His	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3976/4214	3947/4032	1316/1343	chr9	42189649
chr9:42189726	G G	A A	4	a0005 a0016 a0017 others(1): Show a0005 a0016 a0017 a0018	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	missense_variant	MODERATE	c.4024G>A c.4024G>A	p.Gly1342Ser p.Gly1342Ser	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	4053/4214	4024/4032	1342/1343	chr9	42189726
chr9:42189727	G G	T T	1	a0028 a0028	1	HG02486.hp1 HG02486.hp1	missense_variant	MODERATE	c.4025G>T c.4025G>T	p.Gly1342Val p.Gly1342Val	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	4054/4214	4025/4032	1342/1343	chr9	42189727

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr9:42183747	C C	T T	3	a0006c0008 a0027c0042 a0034c0043 a0006c0008 a0027c0042 a0034c0043	5	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(2): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02622.hp2 HG02897.hp2	synonymous_variant	LOW	c.60C>T c.60C>T	p.Ser20Ser p.Ser20Ser	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/4	89/4214	60/4032	20/1343	chr9	42183747
chr9:42183780	C C	T T	2	a0006c0008 a0034c0043 a0006c0008 a0034c0043	4	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(1): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2	synonymous_variant	LOW	c.93C>T c.93C>T	p.Thr31Thr p.Thr31Thr	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/4	122/4214	93/4032	31/1343	chr9	42183780
chr9:42185086	G G	A A	1	a0025c0016 a0025c0016	1	HG03490.hp1 HG03490.hp1	synonymous_variant	LOW	c.207G>A c.207G>A	p.Arg69Arg p.Arg69Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/4	236/4214	207/4032	69/1343	chr9	42185086
chr9:42185738	T T	G G	24	a0001c0001 a0001c0007 a0001c0026 others(21): Show a0001c0001 a0001c0007 a0001c0026 a0001c0027 a0004c0004 a0005c0005 a0016c0034 a0017c0036 a0018c0035 a0020c0025 a0021c0024 a0022c0021 a0023c0022 a0024c0023 a0025c0016 a0026c0020 a0027c0042 a0028c0018 a0029c0019 a0031c0017 a0032c0037 a0033c0038 a0034c0043 a0035c0039	92	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(89): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03490.hp2 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19030.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19086.hp1 NA19087.hp1 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	synonymous_variant	LOW	c.291T>G c.291T>G	p.Leu97Leu p.Leu97Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	3/4	320/4214	291/4032	97/1343	chr9	42185738
chr9:42185750	G G	T T	1	a0001c0027 a0001c0027	1	HG00280.hp1 HG00280.hp1	synonymous_variant	LOW	c.303G>T c.303G>T	p.Leu101Leu p.Leu101Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	3/4	332/4214	303/4032	101/1343	chr9	42185750
chr9:42186056	C C	T T	1	a0002c0033 a0002c0033	1	HG00735.hp1 HG00735.hp1	synonymous_variant	LOW	c.354C>T c.354C>T	p.Ser118Ser p.Ser118Ser	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	383/4214	354/4032	118/1343	chr9	42186056
chr9:42186077	G G	A A	1	a0027c0042 a0027c0042	1	HG02622.hp2 HG02622.hp2	synonymous_variant	LOW	c.375G>A c.375G>A	p.Glu125Glu p.Glu125Glu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	404/4214	375/4032	125/1343	chr9	42186077
chr9:42186083	C C	T T	2	a0033c0038 a0034c0043 a0033c0038 a0034c0043	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	synonymous_variant	LOW	c.381C>T c.381C>T	p.Gly127Gly p.Gly127Gly	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	410/4214	381/4032	127/1343	chr9	42186083
chr9:42186239	C C	T T	1	a0001c0026 a0001c0026	1	HG01516.hp2 HG01516.hp2	synonymous_variant	LOW	c.537C>T c.537C>T	p.Ser179Ser p.Ser179Ser	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	566/4214	537/4032	179/1343	chr9	42186239
chr9:42186461	C C	T T	1	a0029c0019 a0029c0019	1	NA19030.hp2 NA19030.hp2	synonymous_variant	LOW	c.759C>T c.759C>T	p.Ser253Ser p.Ser253Ser	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	788/4214	759/4032	253/1343	chr9	42186461
chr9:42186572	G G	A A	1	a0003c0030 a0003c0030	1	HG01516.hp1 HG01516.hp1	synonymous_variant	LOW	c.870G>A c.870G>A	p.Ser290Ser p.Ser290Ser	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	899/4214	870/4032	290/1343	chr9	42186572
chr9:42186881	C C	T T	4	a0005c0005 a0016c0034 a0017c0036 others(1): Show a0005c0005 a0016c0034 a0017c0036 a0018c0035	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	synonymous_variant	LOW	c.1179C>T c.1179C>T	p.Pro393Pro p.Pro393Pro	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1208/4214	1179/4032	393/1343	chr9	42186881
chr9:42186965	T T	C C	4	a0005c0005 a0016c0034 a0017c0036 others(1): Show a0005c0005 a0016c0034 a0017c0036 a0018c0035	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	synonymous_variant	LOW	c.1263T>C c.1263T>C	p.Ser421Ser p.Ser421Ser	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1292/4214	1263/4032	421/1343	chr9	42186965
chr9:42186995	C C	T T	1	a0001c0007 a0001c0007	3	HG01891.hp1 NA18947.hp1 NA18973.hp2 HG01891.hp1 NA18947.hp1 NA18973.hp2	synonymous_variant	LOW	c.1293C>T c.1293C>T	p.Ala431Ala p.Ala431Ala	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1322/4214	1293/4032	431/1343	chr9	42186995
chr9:42187124	C C	T T	6	a0005c0005 a0016c0034 a0017c0036 others(3): Show a0005c0005 a0016c0034 a0017c0036 a0018c0035 a0033c0038 a0034c0043	11	HG01175.hp2 HG03490.hp2 NA19000.hp2 others(8): Show HG01175.hp2 HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1 NA20129.hp1	synonymous_variant	LOW	c.1422C>T c.1422C>T	p.His474His p.His474His	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1451/4214	1422/4032	474/1343	chr9	42187124
chr9:42187202	G G	A A	2	a0033c0038 a0034c0043 a0033c0038 a0034c0043	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	synonymous_variant	LOW	c.1500G>A c.1500G>A	p.Gln500Gln p.Gln500Gln	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1529/4214	1500/4032	500/1343	chr9	42187202
chr9:42187346	A A	G G	2	a0027c0042 a0029c0019 a0027c0042 a0029c0019	2	HG02622.hp2 NA19030.hp2 HG02622.hp2 NA19030.hp2	synonymous_variant	LOW	c.1644A>G c.1644A>G	p.Leu548Leu p.Leu548Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1673/4214	1644/4032	548/1343	chr9	42187346
chr9:42187547	G G	A A	1	a0002c0028 a0002c0028	1	HG01433.hp2 HG01433.hp2	synonymous_variant	LOW	c.1845G>A c.1845G>A	p.Glu615Glu p.Glu615Glu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1874/4214	1845/4032	615/1343	chr9	42187547
chr9:42187574	C C	T T	17	a0001c0001 a0001c0007 a0001c0026 others(14): Show a0001c0001 a0001c0007 a0001c0026 a0001c0027 a0004c0004 a0020c0025 a0021c0024 a0022c0021 a0023c0022 a0024c0023 a0025c0016 a0026c0020 a0028c0018 a0031c0017 a0032c0037 a0033c0038 a0035c0039	80	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(77): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19004.hp1 NA19056.hp2 NA19057.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	synonymous_variant	LOW	c.1872C>T c.1872C>T	p.Asp624Asp p.Asp624Asp	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	1901/4214	1872/4032	624/1343	chr9	42187574
chr9:42187685	G G	A A	1	a0022c0021 a0022c0021	1	HG03942.hp1 HG03942.hp1	synonymous_variant	LOW	c.1983G>A c.1983G>A	p.Arg661Arg p.Arg661Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2012/4214	1983/4032	661/1343	chr9	42187685
chr9:42187745	C C	T T	1	a0033c0038 a0033c0038	1	NA20129.hp1 NA20129.hp1	synonymous_variant	LOW	c.2043C>T c.2043C>T	p.Asp681Asp p.Asp681Asp	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2072/4214	2043/4032	681/1343	chr9	42187745
chr9:42188133	C C	T T	1	a0029c0019 a0029c0019	1	NA19030.hp2 NA19030.hp2	synonymous_variant	LOW	c.2431C>T c.2431C>T	p.Leu811Leu p.Leu811Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2460/4214	2431/4032	811/1343	chr9	42188133
chr9:42188198	T T	G G	1	a0030c0031 a0030c0031	1	NA18970.hp2 NA18970.hp2	synonymous_variant	LOW	c.2496T>G c.2496T>G	p.Leu832Leu p.Leu832Leu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2525/4214	2496/4032	832/1343	chr9	42188198
chr9:42188201	G G	A A	35	a0001c0001 a0001c0007 a0001c0026 others(32): Show a0001c0001 a0001c0007 a0001c0026 a0001c0027 a0002c0002 a0002c0028 a0002c0029 a0002c0033 a0004c0004 a0005c0005 a0008c0015 a0011c0010 a0012c0009 a0013c0011 a0014c0040 a0015c0041 a0016c0034 a0017c0036 a0018c0035 a0020c0025 a0021c0024 a0022c0021 a0023c0022 a0024c0023 a0025c0016 a0026c0020 a0027c0042 a0028c0018 a0029c0019 a0030c0031 a0031c0017 a0032c0037 a0033c0038 a0034c0043 a0035c0039	141	HG00099.hp1 HG00140.hp2 HG00280.hp1 others(138): Show HG00099.hp1 HG00140.hp2 HG00280.hp1 HG00323.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01109.hp1 HG01109.hp2 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01255.hp2 HG01346.hp1 HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp2 HG01891.hp1 HG01934.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02717.hp2 HG02738.hp2 HG02897.hp1 HG03041.hp1 HG03041.hp2 HG03239.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03516.hp2 HG03669.hp1 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18970.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA18998.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19030.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	synonymous_variant	LOW	c.2499G>A c.2499G>A	p.Thr833Thr p.Thr833Thr	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2528/4214	2499/4032	833/1343	chr9	42188201
chr9:42188417	G G	A A	2	a0033c0038 a0034c0043 a0033c0038 a0034c0043	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	synonymous_variant	LOW	c.2715G>A c.2715G>A	p.Gly905Gly p.Gly905Gly	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2744/4214	2715/4032	905/1343	chr9	42188417
chr9:42188420	C C	G G	1	a0002c0029 a0002c0029	1	HG02572.hp1 HG02572.hp1	synonymous_variant	LOW	c.2718C>G c.2718C>G	p.Pro906Pro p.Pro906Pro	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2747/4214	2718/4032	906/1343	chr9	42188420
chr9:42188549	G G	A A	1	a0019c0032 a0019c0032	1	HG02258.hp1 HG02258.hp1	synonymous_variant	LOW	c.2847G>A c.2847G>A	p.Glu949Glu p.Glu949Glu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	2876/4214	2847/4032	949/1343	chr9	42188549
chr9:42188882	G G	A A	1	a0024c0023 a0024c0023	1	HG00099.hp1 HG00099.hp1	synonymous_variant	LOW	c.3180G>A c.3180G>A	p.Gly1060Gly p.Gly1060Gly	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3209/4214	3180/4032	1060/1343	chr9	42188882
chr9:42189035	G G	A A	2	a0033c0038 a0034c0043 a0033c0038 a0034c0043	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	synonymous_variant	LOW	c.3333G>A c.3333G>A	p.Lys1111Lys p.Lys1111Lys	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3362/4214	3333/4032	1111/1343	chr9	42189035
chr9:42189461	A A	G G	4	a0005c0005 a0016c0034 a0017c0036 others(1): Show a0005c0005 a0016c0034 a0017c0036 a0018c0035	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	synonymous_variant	LOW	c.3759A>G c.3759A>G	p.Glu1253Glu p.Glu1253Glu	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3788/4214	3759/4032	1253/1343	chr9	42189461
chr9:42189464	T T	C C	24	a0001c0001 a0001c0007 a0001c0026 others(21): Show a0001c0001 a0001c0007 a0001c0026 a0001c0027 a0004c0004 a0005c0005 a0016c0034 a0017c0036 a0018c0035 a0020c0025 a0021c0024 a0022c0021 a0023c0022 a0024c0023 a0025c0016 a0026c0020 a0027c0042 a0028c0018 a0029c0019 a0031c0017 a0032c0037 a0033c0038 a0034c0043 a0035c0039	92	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(89): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03490.hp2 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19030.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19086.hp1 NA19087.hp1 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	synonymous_variant	LOW	c.3762T>C c.3762T>C	p.His1254His p.His1254His	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3791/4214	3762/4032	1254/1343	chr9	42189464
chr9:42189539	G G	A A	2	a0033c0038 a0034c0043 a0033c0038 a0034c0043	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	synonymous_variant	LOW	c.3837G>A c.3837G>A	p.Arg1279Arg p.Arg1279Arg	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	3866/4214	3837/4032	1279/1343	chr9	42189539

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr9:42183676	G G	A A	2	a0003c0003t0008 a0030c0031t0007 a0003c0003t0008 a0030c0031t0007	2	HG01934.hp2 NA18970.hp2 HG01934.hp2 NA18970.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-12G>A c.-12G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/4		chr9	42183676
chr9:42183677	T T	C C	28	a0001c0001t0001 a0001c0007t0001 a0001c0026t0001 others(25): Show a0001c0001t0001 a0001c0007t0001 a0001c0026t0001 a0001c0027t0001 a0003c0003t0003 a0004c0004t0001 a0005c0005t0004 a0006c0008t0003 a0007c0006t0003 a0009c0013t0003 a0013c0011t0003 a0015c0041t0003 a0016c0034t0004 a0017c0036t0005 a0018c0035t0005 a0020c0025t0001 a0021c0024t0001 a0022c0021t0001 a0023c0022t0001 a0024c0023t0001 a0025c0016t0001 a0026c0020t0001 a0028c0018t0009 a0030c0031t0007 a0031c0017t0001 a0032c0037t0001 a0034c0043t0010 a0035c0039t0001	108	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(105): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00323.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02083.hp2 HG02109.hp1 HG02135.hp2 HG02145.hp2 HG02258.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03195.hp1 HG03239.hp1 HG03239.hp2 HG03490.hp1 HG03490.hp2 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp1 NA18967.hp2 NA18970.hp1 NA18970.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19030.hp1 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19086.hp1 NA19087.hp1 NA19090.hp1 NA19090.hp2 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	5_prime_UTR_variant	MODIFIER	c.-11T>C c.-11T>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/4	11	chr9	42183677
chr9:42189779	C C	G G	3	a0027c0042t0006 a0029c0019t0006 a0034c0043t0010 a0027c0042t0006 a0029c0019t0006 a0034c0043t0010	3	HG01175.hp2 HG02622.hp2 NA19030.hp2 HG01175.hp2 HG02622.hp2 NA19030.hp2	3_prime_UTR_variant	MODIFIER	c.45C>G c.45C>G	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	45	chr9	42189779
chr9:42189788	A A	T T	18	a0001c0001t0001 a0001c0007t0001 a0001c0026t0001 others(15): Show a0001c0001t0001 a0001c0007t0001 a0001c0026t0001 a0001c0027t0001 a0004c0004t0001 a0020c0025t0001 a0021c0024t0001 a0022c0021t0001 a0023c0022t0001 a0024c0023t0001 a0025c0016t0001 a0026c0020t0001 a0027c0042t0006 a0028c0018t0009 a0029c0019t0006 a0031c0017t0001 a0032c0037t0001 a0035c0039t0001	81	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(78): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19004.hp1 NA19030.hp2 NA19056.hp2 NA19057.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	3_prime_UTR_variant	MODIFIER	c.54A>T c.54A>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	54	chr9	42189788
chr9:42189825	C C	A A	2	a0017c0036t0005 a0018c0035t0005 a0017c0036t0005 a0018c0035t0005	2	NA19056.hp1 NA19057.hp2 NA19056.hp1 NA19057.hp2	3_prime_UTR_variant	MODIFIER	c.91C>A c.91C>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	91	chr9	42189825
chr9:42189839	A A	C C	25	a0001c0001t0001 a0001c0007t0001 a0001c0026t0001 others(22): Show a0001c0001t0001 a0001c0007t0001 a0001c0026t0001 a0001c0027t0001 a0004c0004t0001 a0005c0005t0004 a0008c0015t0012 a0016c0034t0004 a0017c0036t0005 a0018c0035t0005 a0020c0025t0001 a0021c0024t0001 a0022c0021t0001 a0023c0022t0001 a0024c0023t0001 a0025c0016t0001 a0026c0020t0001 a0027c0042t0006 a0028c0018t0009 a0029c0019t0006 a0031c0017t0001 a0032c0037t0001 a0033c0038t0011 a0034c0043t0010 a0035c0039t0001	93	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(90): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19030.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19086.hp1 NA19087.hp1 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	3_prime_UTR_variant	MODIFIER	c.105A>C c.105A>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	105	chr9	42189839
chr9:42189840	A A	C C	2	a0028c0018t0009 a0034c0043t0010 a0028c0018t0009 a0034c0043t0010	2	HG01175.hp2 HG02486.hp1 HG01175.hp2 HG02486.hp1	3_prime_UTR_variant	MODIFIER	c.106A>C c.106A>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	106	chr9	42189840
chr9:42189883	T T	C C	24	a0001c0001t0001 a0001c0007t0001 a0001c0026t0001 others(21): Show a0001c0001t0001 a0001c0007t0001 a0001c0026t0001 a0001c0027t0001 a0004c0004t0001 a0005c0005t0004 a0016c0034t0004 a0017c0036t0005 a0018c0035t0005 a0020c0025t0001 a0021c0024t0001 a0022c0021t0001 a0023c0022t0001 a0024c0023t0001 a0025c0016t0001 a0026c0020t0001 a0027c0042t0006 a0028c0018t0009 a0029c0019t0006 a0031c0017t0001 a0032c0037t0001 a0033c0038t0011 a0034c0043t0010 a0035c0039t0001	92	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(89): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03490.hp2 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19030.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19086.hp1 NA19087.hp1 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	3_prime_UTR_variant	MODIFIER	c.149T>C c.149T>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	4/4	149	chr9	42189883

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr9:42183882	G G	A A	1	a0008c0015t0012g0024 a0008c0015t0012g0024	1	HG03486.hp2 HG03486.hp2	splice_region_variant&intron_variant	LOW	c.189+6G>A c.189+6G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42183882
chr9:42183896	G G	A A	11	a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 others(8): Show a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0006c0008t0003g0015 a0006c0008t0003g0030 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014 a0033c0038t0011g0029 a0034c0043t0010g0031	14	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(11): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1 NA20129.hp1	intron_variant	MODIFIER	c.189+20G>A c.189+20G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42183896
chr9:42183937	T T	C C	1	a0029c0019t0006g0032 a0029c0019t0006g0032	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.189+61T>C c.189+61T>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42183937
chr9:42184075	A A	C C	13	a0003c0003t0002g0066 a0003c0003t0002g0067 a0005c0005t0004g0011 others(10): Show a0003c0003t0002g0066 a0003c0003t0002g0067 a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0006c0008t0003g0015 a0006c0008t0003g0030 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014 a0033c0038t0011g0029 a0034c0043t0010g0031	16	HG00280.hp2 HG01175.hp1 HG01175.hp2 others(13): Show HG00280.hp2 HG01175.hp1 HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1 NA20129.hp1	intron_variant	MODIFIER	c.189+199A>C c.189+199A>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184075
chr9:42184102	G G	A A	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	NA18951.hp1 NA18951.hp1	intron_variant	MODIFIER	c.189+226G>A c.189+226G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184102
chr9:42184217	G G	T T	4	a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 others(1): Show a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	5	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(2): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 NA20129.hp1	intron_variant	MODIFIER	c.189+341G>T c.189+341G>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184217
chr9:42184233	C C	T T	1	a0011c0010t0002g0023 a0011c0010t0002g0023	2	HG02559.hp1 HG03041.hp2 HG02559.hp1 HG03041.hp2	intron_variant	MODIFIER	c.189+357C>T c.189+357C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184233
chr9:42184243	C C	T T	1	a0002c0002t0002g0065 a0002c0002t0002g0065	1	NA18612.hp1 NA18612.hp1	intron_variant	MODIFIER	c.189+367C>T c.189+367C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184243
chr9:42184258	C C	G G	1	a0005c0005t0004g0028 a0005c0005t0004g0028	1	NA19074.hp2 NA19074.hp2	intron_variant	MODIFIER	c.189+382C>G c.189+382C>G	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184258
chr9:42184274	G G	A A	1	a0004c0004t0001g0034 a0004c0004t0001g0034	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.189+398G>A c.189+398G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184274
chr9:42184279	C C	T T	34	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 others(31): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0022 a0001c0001t0001g0033 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0007t0001g0001 a0001c0026t0001g0003 a0001c0027t0001g0007 a0004c0004t0001g0001 a0004c0004t0001g0034 a0004c0004t0001g0059 a0006c0008t0003g0015 a0006c0008t0003g0030 a0020c0025t0001g0003 a0021c0024t0001g0007 a0022c0021t0001g0057 a0023c0022t0001g0003 a0024c0023t0001g0010 a0025c0016t0001g0001 a0026c0020t0001g0001 a0031c0017t0001g0003 a0032c0037t0001g0001 a0033c0038t0011g0029 a0034c0043t0010g0031 a0035c0039t0001g0007	83	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(80): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01891.hp2 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp2 HG02897.hp1 HG02897.hp2 HG03239.hp1 HG03490.hp1 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19004.hp1 NA19056.hp2 NA19057.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	intron_variant	MODIFIER	c.189+403C>T c.189+403C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184279
chr9:42184318	T T	C C	7	a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 others(4): Show a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	intron_variant	MODIFIER	c.189+442T>C c.189+442T>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184318
chr9:42184437	C C	T T	1	a0029c0019t0006g0032 a0029c0019t0006g0032	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.189+561C>T c.189+561C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184437
chr9:42184439	C C	CTG CTG	15	a0003c0003t0002g0004 a0003c0003t0002g0012 a0003c0003t0002g0020 others(12): Show a0003c0003t0002g0004 a0003c0003t0002g0012 a0003c0003t0002g0020 a0003c0003t0002g0066 a0003c0003t0002g0067 a0003c0003t0003g0004 a0003c0003t0008g0012 a0003c0030t0002g0012 a0005c0005t0004g0011 a0005c0005t0004g0026 a0008c0015t0002g0040 a0009c0013t0003g0021 a0010c0012t0002g0020 a0022c0021t0001g0057 a0030c0031t0007g0004	21	HG00099.hp2 HG00280.hp2 HG00423.hp2 others(18): Show HG00099.hp2 HG00280.hp2 HG00423.hp2 HG00558.hp1 HG01175.hp1 HG01516.hp1 HG01934.hp2 HG02055.hp1 HG02056.hp1 HG02922.hp2 HG03041.hp1 HG03195.hp2 HG03942.hp1 NA18970.hp2 NA18979.hp1 NA18979.hp2 NA19000.hp2 NA19070.hp1 NA19086.hp1 NA19090.hp1 NA20752.hp1	intron_variant	MODIFIER	c.190-588_190-587dup others(2): Show c.190-588_190-587dupGT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184439
chr9:42184439	C C	CTGTG CTGTG	7	a0003c0003t0002g0017 a0003c0003t0002g0018 a0003c0003t0002g0039 others(4): Show a0003c0003t0002g0017 a0003c0003t0002g0018 a0003c0003t0002g0039 a0003c0003t0003g0018 a0003c0003t0003g0019 a0005c0005t0004g0025 a0027c0042t0006g0038	9	HG00323.hp2 HG02622.hp2 HG02717.hp1 others(6): Show HG00323.hp2 HG02622.hp2 HG02717.hp1 HG03710.hp2 NA18951.hp2 NA18954.hp1 NA18967.hp1 NA19004.hp2 NA20905.hp1	intron_variant	MODIFIER	c.190-590_190-587dup others(4): Show c.190-590_190-587dupGTGT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184439
chr9:42184439	C C	CTGTGTG CTGTGTG	3	a0003c0003t0003g0016 a0007c0006t0002g0036 a0007c0006t0002g0037 a0003c0003t0003g0016 a0007c0006t0002g0036 a0007c0006t0002g0037	4	HG00140.hp1 HG00642.hp2 HG02572.hp2 others(1): Show HG00140.hp1 HG00642.hp2 HG02572.hp2 HG03516.hp1	intron_variant	MODIFIER	c.190-592_190-587dup others(6): Show c.190-592_190-587dupGTGTGT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184439
chr9:42184439	C C	CTGTGTGT others(5): Show CTGTGTGTGTGTG	1	a0007c0006t0002g0035 a0007c0006t0002g0035	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.189+595_190-587dup others(12): Show c.189+595_190-587dupGTGTGTGTGTGT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184439
chr9:42184439	CTG CTG	C C	5	a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0058 others(2): Show a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0058 a0003c0003t0002g0048 a0010c0012t0002g0047	11	HG00423.hp1 HG02056.hp2 HG02273.hp1 others(8): Show HG00423.hp1 HG02056.hp2 HG02273.hp1 HG02615.hp1 HG02738.hp1 HG03516.hp2 NA18966.hp2 NA18970.hp1 NA18998.hp2 NA20752.hp2 NA20805.hp1	intron_variant	MODIFIER	c.190-588_190-587del others(2): Show c.190-588_190-587delGT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184439
chr9:42184439	CTGTG CTGTG	C C	32	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0010 others(29): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0010 a0001c0001t0001g0022 a0001c0001t0001g0033 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0007t0001g0001 a0001c0026t0001g0003 a0002c0002t0002g0002 a0002c0002t0002g0006 a0002c0002t0002g0051 a0002c0002t0002g0065 a0002c0029t0002g0006 a0004c0004t0001g0001 a0004c0004t0001g0034 a0004c0004t0001g0059 a0006c0014t0002g0052 a0007c0006t0003g0049 a0011c0010t0002g0023 a0012c0009t0002g0002 a0013c0011t0003g0002 a0015c0041t0003g0050 a0020c0025t0001g0003 a0023c0022t0001g0003 a0024c0023t0001g0010 a0025c0016t0001g0001 a0026c0020t0001g0001 a0031c0017t0001g0003 a0032c0037t0001g0001	100	HG00099.hp1 HG00140.hp2 HG00323.hp1 others(97): Show HG00099.hp1 HG00140.hp2 HG00323.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00741.hp1 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01255.hp2 HG01346.hp2 HG01433.hp1 HG01516.hp2 HG01891.hp1 HG01934.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp2 HG02258.hp2 HG02273.hp2 HG02300.hp1 HG02300.hp2 HG02559.hp1 HG02572.hp1 HG02615.hp2 HG02717.hp2 HG02738.hp2 HG02897.hp1 HG03041.hp2 HG03239.hp1 HG03490.hp1 HG03669.hp1 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 HG04228.hp2 NA18612.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp1 NA18967.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA18998.hp1 NA19000.hp1 NA19004.hp1 NA19030.hp1 NA19056.hp2 NA19057.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19090.hp2 NA20129.hp2 NA20805.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.190-590_190-587del others(4): Show c.190-590_190-587delGTGT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184439
chr9:42184439	CTGTGTG CTGTGTG	C C	9	a0001c0001t0001g0007 a0001c0001t0001g0064 a0001c0027t0001g0007 others(6): Show a0001c0001t0001g0007 a0001c0001t0001g0064 a0001c0027t0001g0007 a0002c0002t0002g0005 a0002c0028t0002g0005 a0003c0003t0002g0053 a0006c0014t0002g0054 a0021c0024t0001g0007 a0035c0039t0001g0007	14	HG00280.hp1 HG00735.hp2 HG00741.hp2 others(11): Show HG00280.hp1 HG00735.hp2 HG00741.hp2 HG01109.hp1 HG01109.hp2 HG01346.hp1 HG01433.hp2 HG01952.hp2 HG02135.hp1 HG02486.hp2 HG03486.hp1 HG03834.hp2 HG04228.hp1 NA18612.hp2	intron_variant	MODIFIER	c.190-592_190-587del others(6): Show c.190-592_190-587delGTGTGT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184439
chr9:42184439	CTGTGTGT others(1): Show CTGTGTGTG	C C	2	a0002c0033t0002g0055 a0029c0019t0006g0032 a0002c0033t0002g0055 a0029c0019t0006g0032	2	HG00735.hp1 NA19030.hp2 HG00735.hp1 NA19030.hp2	intron_variant	MODIFIER	c.190-594_190-587del others(8): Show c.190-594_190-587delGTGTGTGT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184439
chr9:42184439	CTGTGTGT others(3): Show CTGTGTGTGTG	C C	1	a0002c0002t0002g0056 a0002c0002t0002g0056	1	HG02148.hp1 HG02148.hp1	intron_variant	MODIFIER	c.190-596_190-587del others(10): Show c.190-596_190-587delGTGTGTGTGT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184439
chr9:42184469	G G	GTATTTTT others(4): Show GTATTTTTATTT	1	a0033c0038t0011g0029 a0033c0038t0011g0029	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.189+594_189+595ins others(11): Show c.189+594_189+595insATTTTTATTTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184469
chr9:42184471	G G	A A	1	a0033c0038t0011g0029 a0033c0038t0011g0029	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.189+595G>A c.189+595G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184471
chr9:42184473	G G	GTGTGTAT others(12): Show GTGTGTATTTTTATTTTATT	1	a0006c0008t0003g0030 a0006c0008t0003g0030	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.190-591_190-590ins others(19): Show c.190-591_190-590insATTTTTATTTTATTTGTGT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184473
chr9:42184473	G G	T T	1	a0033c0038t0011g0029 a0033c0038t0011g0029	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.190-596G>T c.190-596G>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184473
chr9:42184481	GT GT	G G	2	a0006c0008t0003g0015 a0034c0043t0010g0031 a0006c0008t0003g0015 a0034c0043t0010g0031	3	HG01175.hp2 HG02055.hp2 HG02897.hp2 HG01175.hp2 HG02055.hp2 HG02897.hp2	intron_variant	MODIFIER	c.190-586delT c.190-586delT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184481
chr9:42184501	G G	A A	1	a0006c0008t0003g0030 a0006c0008t0003g0030	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.190-568G>A c.190-568G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184501
chr9:42184503	G G	GTGTTATT others(6): Show GTGTTATTTTTATT	1	a0006c0008t0003g0015 a0006c0008t0003g0015	2	HG02055.hp2 HG02897.hp2 HG02055.hp2 HG02897.hp2	intron_variant	MODIFIER	c.190-565_190-564ins others(13): Show c.190-565_190-564insGTTATTTTTATTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184503	G G	GTGTTATT others(16): Show GTGTTATTTTTATTTTATTTTATT	1	a0034c0043t0010g0031 a0034c0043t0010g0031	1	HG01175.hp2 HG01175.hp2	intron_variant	MODIFIER	c.190-565_190-564ins others(23): Show c.190-565_190-564insGTTATTTTTATTTTATTTTATTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184503	G G	GTTAT GTTAT	5	a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0028 others(2): Show a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0028 a0017c0036t0005g0014 a0018c0035t0005g0014	7	NA19004.hp2 NA19056.hp1 NA19057.hp2 others(4): Show NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	intron_variant	MODIFIER	c.190-563_190-560dup others(4): Show c.190-563_190-560dupATTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184503	G G	GTTATT GTTATT	8	a0001c0001t0001g0010 a0001c0001t0001g0058 a0001c0001t0001g0064 others(5): Show a0001c0001t0001g0010 a0001c0001t0001g0058 a0001c0001t0001g0064 a0002c0002t0002g0006 a0002c0029t0002g0006 a0007c0006t0002g0037 a0024c0023t0001g0010 a0028c0018t0009g0043	13	HG00099.hp1 HG01081.hp2 HG01192.hp2 others(10): Show HG00099.hp1 HG01081.hp2 HG01192.hp2 HG02109.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp2 NA18970.hp1 NA18974.hp1 NA18980.hp2 NA19090.hp2	intron_variant	MODIFIER	c.190-528_190-524dup others(5): Show c.190-528_190-524dupATTTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184503	G G	GTTATTTA others(2): Show GTTATTTATT	2	a0005c0005t0004g0026 a0016c0034t0004g0027 a0005c0005t0004g0026 a0016c0034t0004g0027	2	HG03490.hp2 NA19000.hp2 HG03490.hp2 NA19000.hp2	intron_variant	MODIFIER	c.190-560_190-559ins others(9): Show c.190-560_190-559insATTTTATTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184503	G G	GTTATTTT others(3): Show GTTATTTTATT	14	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0042 others(11): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0042 a0002c0002t0002g0051 a0002c0002t0002g0056 a0002c0028t0002g0005 a0002c0033t0002g0055 a0007c0006t0002g0035 a0007c0006t0002g0036 a0008c0015t0012g0024 a0012c0009t0002g0002 a0013c0011t0003g0002 a0014c0040t0002g0041 a0015c0041t0003g0050	41	HG00140.hp2 HG00323.hp1 HG00639.hp1 others(38): Show HG00140.hp2 HG00323.hp1 HG00639.hp1 HG00735.hp1 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01099.hp2 HG01109.hp2 HG01255.hp2 HG01433.hp1 HG01433.hp2 HG01934.hp1 HG01943.hp1 HG01952.hp2 HG01993.hp1 HG01993.hp2 HG02083.hp1 HG02109.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02258.hp2 HG02273.hp2 HG02559.hp2 HG02622.hp1 HG02738.hp2 HG03486.hp2 HG03516.hp1 HG03669.hp1 HG03831.hp2 HG03834.hp1 HG03942.hp2 HG04115.hp2 NA18612.hp2 NA18966.hp1 NA18998.hp1 NA19086.hp2 NA19087.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.190-533_190-524dup others(10): Show c.190-533_190-524dupATTTTATTTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184503	G G	GTTATTTT others(8): Show GTTATTTTATTTTATT	2	a0007c0006t0003g0049 a0008c0015t0002g0040 a0007c0006t0003g0049 a0008c0015t0002g0040	2	HG03041.hp1 NA19030.hp1 HG03041.hp1 NA19030.hp1	intron_variant	MODIFIER	c.190-538_190-524dup others(15): Show c.190-538_190-524dupATTTTATTTTATTTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184503	G G	GTTATTTT others(13): Show GTTATTTTATTTTATTTTATT	1	a0002c0002t0002g0065 a0002c0002t0002g0065	1	NA18612.hp1 NA18612.hp1	intron_variant	MODIFIER	c.190-543_190-524dup others(20): Show c.190-543_190-524dupATTTTATTTTATTTTATTTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184503	G G	T T	1	a0006c0008t0003g0030 a0006c0008t0003g0030	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.190-566G>T c.190-566G>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184503
chr9:42184503	GTTATT GTTATT	G G	31	a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0009 others(28): Show a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0022 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0026t0001g0003 a0001c0027t0001g0007 a0003c0003t0002g0004 a0003c0003t0002g0012 a0003c0003t0002g0018 a0003c0003t0002g0039 a0003c0003t0002g0045 a0003c0003t0002g0048 a0003c0003t0002g0067 a0003c0003t0003g0004 a0003c0003t0003g0016 a0003c0003t0003g0018 a0003c0003t0003g0019 a0003c0003t0003g0044 a0003c0003t0008g0012 a0003c0030t0002g0012 a0006c0014t0002g0052 a0006c0014t0002g0054 a0020c0025t0001g0003 a0021c0024t0001g0007 a0022c0021t0001g0057 a0023c0022t0001g0003 a0030c0031t0007g0004 a0031c0017t0001g0003 a0035c0039t0001g0007	58	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(55): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00423.hp2 HG00438.hp2 HG00558.hp1 HG00597.hp1 HG00639.hp2 HG00642.hp2 HG00735.hp2 HG01071.hp2 HG01099.hp1 HG01109.hp1 HG01175.hp1 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp1 HG01516.hp2 HG01934.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp1 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02615.hp1 HG02717.hp2 HG02738.hp1 HG02897.hp1 HG03239.hp2 HG03669.hp2 HG03710.hp2 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 HG04228.hp1 HG04228.hp2 NA18747.hp2 NA18947.hp2 NA18951.hp2 NA18954.hp1 NA18966.hp2 NA18967.hp1 NA18970.hp2 NA18973.hp1 NA18979.hp2 NA18980.hp1 NA20129.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp2	intron_variant	MODIFIER	c.190-528_190-524del others(5): Show c.190-528_190-524delATTTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184503	GTTATTTT others(8): Show GTTATTTTATTTTATT	G G	1	a0029c0019t0006g0032 a0029c0019t0006g0032	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.190-538_190-524del others(15): Show c.190-538_190-524delATTTTATTTTATTTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184503	GTTATTTT others(13): Show GTTATTTTATTTTATTTTATT	G G	1	a0003c0003t0003g0046 a0003c0003t0003g0046	1	HG03195.hp1 HG03195.hp1	intron_variant	MODIFIER	c.190-543_190-524del others(20): Show c.190-543_190-524delATTTTATTTTATTTTATTTT	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3	INFO_REALIGN_3_PRIME	chr9	42184503
chr9:42184569	A A	G G	5	a0003c0003t0002g0039 a0006c0008t0003g0015 a0006c0008t0003g0030 others(2): Show a0003c0003t0002g0039 a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	6	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(3): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 HG03710.hp2 NA20129.hp1	intron_variant	MODIFIER	c.190-500A>G c.190-500A>G	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184569
chr9:42184570	C C	T T	5	a0003c0003t0002g0039 a0006c0008t0003g0015 a0006c0008t0003g0030 others(2): Show a0003c0003t0002g0039 a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	6	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(3): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 HG03710.hp2 NA20129.hp1	intron_variant	MODIFIER	c.190-499C>T c.190-499C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184570
chr9:42184571	G G	A A	2	a0017c0036t0005g0014 a0018c0035t0005g0014 a0017c0036t0005g0014 a0018c0035t0005g0014	2	NA19056.hp1 NA19057.hp2 NA19056.hp1 NA19057.hp2	intron_variant	MODIFIER	c.190-498G>A c.190-498G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184571
chr9:42184598	A A	C C	4	a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 others(1): Show a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	5	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(2): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 NA20129.hp1	intron_variant	MODIFIER	c.190-471A>C c.190-471A>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184598
chr9:42184622	C C	T T	4	a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 others(1): Show a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	5	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(2): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 NA20129.hp1	intron_variant	MODIFIER	c.190-447C>T c.190-447C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184622
chr9:42184625	G G	T T	1	a0001c0001t0001g0063 a0001c0001t0001g0063	1	HG02145.hp2 HG02145.hp2	intron_variant	MODIFIER	c.190-444G>T c.190-444G>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184625
chr9:42184649	C C	A A	4	a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 others(1): Show a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	5	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(2): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 NA20129.hp1	intron_variant	MODIFIER	c.190-420C>A c.190-420C>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184649
chr9:42184675	C C	T T	13	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0006 others(10): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0006 a0002c0002t0002g0042 a0002c0002t0002g0051 a0002c0002t0002g0056 a0002c0002t0002g0065 a0002c0028t0002g0005 a0002c0029t0002g0006 a0002c0033t0002g0055 a0011c0010t0002g0023 a0012c0009t0002g0002 a0013c0011t0003g0002	44	HG00140.hp2 HG00323.hp1 HG00639.hp1 others(41): Show HG00140.hp2 HG00323.hp1 HG00639.hp1 HG00735.hp1 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01081.hp2 HG01099.hp2 HG01109.hp2 HG01192.hp2 HG01255.hp2 HG01433.hp1 HG01433.hp2 HG01934.hp1 HG01943.hp1 HG01952.hp2 HG01993.hp1 HG01993.hp2 HG02083.hp1 HG02109.hp2 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02258.hp2 HG02273.hp2 HG02559.hp1 HG02572.hp1 HG02738.hp2 HG03041.hp2 HG03669.hp1 HG03831.hp2 HG03834.hp1 HG03942.hp2 HG04115.hp2 NA18612.hp1 NA18612.hp2 NA18966.hp1 NA18974.hp1 NA18998.hp1 NA19086.hp2 NA19087.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.190-394C>T c.190-394C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184675
chr9:42184710	T T	G G	1	a0004c0004t0001g0059 a0004c0004t0001g0059	1	HG01943.hp2 HG01943.hp2	intron_variant	MODIFIER	c.190-359T>G c.190-359T>G	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184710
chr9:42184717	G G	C C	4	a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 others(1): Show a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	5	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(2): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 NA20129.hp1	intron_variant	MODIFIER	c.190-352G>C c.190-352G>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184717
chr9:42184787	C C	T T	7	a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 others(4): Show a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	intron_variant	MODIFIER	c.190-282C>T c.190-282C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184787
chr9:42184805	G G	A A	1	a0029c0019t0006g0032 a0029c0019t0006g0032	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.190-264G>A c.190-264G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184805
chr9:42184814	C C	T T	4	a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 others(1): Show a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	5	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(2): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 NA20129.hp1	intron_variant	MODIFIER	c.190-255C>T c.190-255C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184814
chr9:42184836	C C	T T	31	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 others(28): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0022 a0001c0001t0001g0033 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0007t0001g0001 a0001c0026t0001g0003 a0001c0027t0001g0007 a0004c0004t0001g0001 a0004c0004t0001g0034 a0004c0004t0001g0059 a0020c0025t0001g0003 a0021c0024t0001g0007 a0022c0021t0001g0057 a0023c0022t0001g0003 a0024c0023t0001g0010 a0025c0016t0001g0001 a0026c0020t0001g0001 a0028c0018t0009g0043 a0031c0017t0001g0003 a0032c0037t0001g0001 a0035c0039t0001g0007	79	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(76): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19004.hp1 NA19056.hp2 NA19057.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	intron_variant	MODIFIER	c.190-233C>T c.190-233C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184836
chr9:42184871	G G	T T	4	a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 others(1): Show a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	5	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(2): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 NA20129.hp1	intron_variant	MODIFIER	c.190-198G>T c.190-198G>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184871
chr9:42184879	T T	A A	4	a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 others(1): Show a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	5	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(2): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 NA20129.hp1	intron_variant	MODIFIER	c.190-190T>A c.190-190T>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184879
chr9:42184920	G G	A A	1	a0001c0001t0001g0060 a0001c0001t0001g0060	1	HG01081.hp1 HG01081.hp1	intron_variant	MODIFIER	c.190-149G>A c.190-149G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184920
chr9:42184925	T T	C C	11	a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 others(8): Show a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0006c0008t0003g0015 a0006c0008t0003g0030 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014 a0033c0038t0011g0029 a0034c0043t0010g0031	14	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(11): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1 NA20129.hp1	intron_variant	MODIFIER	c.190-144T>C c.190-144T>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184925
chr9:42184965	A A	G G	74	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 others(71): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0022 a0001c0001t0001g0033 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0007t0001g0001 a0001c0026t0001g0003 a0001c0027t0001g0007 a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0006 a0002c0002t0002g0042 a0002c0002t0002g0051 a0002c0002t0002g0056 a0002c0002t0002g0065 a0002c0028t0002g0005 a0002c0029t0002g0006 a0002c0033t0002g0055 a0003c0003t0002g0012 a0003c0003t0002g0039 a0003c0003t0002g0045 a0003c0003t0002g0048 a0003c0003t0002g0053 a0003c0003t0003g0019 a0003c0003t0008g0012 a0003c0030t0002g0012 a0004c0004t0001g0001 a0004c0004t0001g0034 a0004c0004t0001g0059 a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0006c0008t0003g0015 a0006c0008t0003g0030 a0007c0006t0002g0035 a0007c0006t0002g0036 a0007c0006t0002g0037 a0007c0006t0003g0049 a0008c0015t0002g0040 a0008c0015t0012g0024 a0009c0013t0003g0021 a0011c0010t0002g0023 a0012c0009t0002g0002 a0013c0011t0003g0002 a0014c0040t0002g0041 a0015c0041t0003g0050 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014 a0020c0025t0001g0003 a0021c0024t0001g0007 a0022c0021t0001g0057 a0023c0022t0001g0003 a0024c0023t0001g0010 a0025c0016t0001g0001 a0026c0020t0001g0001 a0027c0042t0006g0038 a0028c0018t0009g0043 a0029c0019t0006g0032 a0031c0017t0001g0003 a0032c0037t0001g0001 a0033c0038t0011g0029 a0034c0043t0010g0031 a0035c0039t0001g0007	158	HG00099.hp1 HG00140.hp2 HG00280.hp1 others(155): Show HG00099.hp1 HG00140.hp2 HG00280.hp1 HG00323.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01109.hp1 HG01109.hp2 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01255.hp2 HG01346.hp1 HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp1 HG01516.hp2 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02717.hp2 HG02738.hp1 HG02738.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03041.hp1 HG03041.hp2 HG03239.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03516.hp1 HG03516.hp2 HG03669.hp1 HG03669.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp1 NA18954.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp1 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA18998.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19030.hp1 NA19030.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19086.hp1 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.190-104A>G c.190-104A>G	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184965
chr9:42184982	A A	G G	11	a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 others(8): Show a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0006c0008t0003g0015 a0006c0008t0003g0030 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014 a0033c0038t0011g0029 a0034c0043t0010g0031	14	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(11): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1 NA20129.hp1	intron_variant	MODIFIER	c.190-87A>G c.190-87A>G	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184982
chr9:42184996	G G	A A	28	a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0006 others(25): Show a0002c0002t0002g0002 a0002c0002t0002g0005 a0002c0002t0002g0006 a0002c0002t0002g0042 a0002c0002t0002g0051 a0002c0002t0002g0056 a0002c0002t0002g0065 a0002c0028t0002g0005 a0002c0029t0002g0006 a0002c0033t0002g0055 a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0006c0008t0003g0015 a0006c0008t0003g0030 a0008c0015t0002g0040 a0008c0015t0012g0024 a0011c0010t0002g0023 a0012c0009t0002g0002 a0013c0011t0003g0002 a0014c0040t0002g0041 a0015c0041t0003g0050 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014 a0033c0038t0011g0029 a0034c0043t0010g0031	62	HG00140.hp2 HG00323.hp1 HG00639.hp1 others(59): Show HG00140.hp2 HG00323.hp1 HG00639.hp1 HG00735.hp1 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01081.hp2 HG01099.hp2 HG01109.hp2 HG01175.hp2 HG01192.hp2 HG01255.hp2 HG01433.hp1 HG01433.hp2 HG01891.hp2 HG01934.hp1 HG01943.hp1 HG01952.hp2 HG01993.hp1 HG01993.hp2 HG02055.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02258.hp2 HG02273.hp2 HG02559.hp1 HG02572.hp1 HG02622.hp1 HG02738.hp2 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03486.hp2 HG03490.hp2 HG03669.hp1 HG03831.hp2 HG03834.hp1 HG03942.hp2 HG04115.hp2 NA18612.hp1 NA18612.hp2 NA18966.hp1 NA18974.hp1 NA18998.hp1 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19086.hp2 NA19087.hp2 NA19090.hp1 NA20129.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.190-73G>A c.190-73G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42184996
chr9:42185031	C C	T T	2	a0002c0002t0002g0051 a0033c0038t0011g0029 a0002c0002t0002g0051 a0033c0038t0011g0029	2	HG01255.hp2 NA20129.hp1 HG01255.hp2 NA20129.hp1	intron_variant	MODIFIER	c.190-38C>T c.190-38C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42185031
chr9:42185058	A A	G G	12	a0001c0001t0001g0062 a0005c0005t0004g0011 a0005c0005t0004g0025 others(9): Show a0001c0001t0001g0062 a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0006c0008t0003g0015 a0006c0008t0003g0030 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014 a0033c0038t0011g0029 a0034c0043t0010g0031	15	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(12): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 HG03490.hp2 HG03831.hp1 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1 NA20129.hp1	intron_variant	MODIFIER	c.190-11A>G c.190-11A>G	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	1/3		chr9	42185058
chr9:42185144	C C	T T	2	a0007c0006t0002g0036 a0007c0006t0003g0049 a0007c0006t0002g0036 a0007c0006t0003g0049	2	HG03516.hp1 NA19030.hp1 HG03516.hp1 NA19030.hp1	intron_variant	MODIFIER	c.247+18C>T c.247+18C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185144
chr9:42185152	A A	G G	3	a0006c0008t0003g0015 a0006c0008t0003g0030 a0034c0043t0010g0031 a0006c0008t0003g0015 a0006c0008t0003g0030 a0034c0043t0010g0031	4	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(1): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2	intron_variant	MODIFIER	c.247+26A>G c.247+26A>G	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185152
chr9:42185176	G G	A A	2	a0006c0008t0003g0015 a0006c0008t0003g0030 a0006c0008t0003g0015 a0006c0008t0003g0030	3	HG01891.hp2 HG02055.hp2 HG02897.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2	intron_variant	MODIFIER	c.247+50G>A c.247+50G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185176
chr9:42185177	G G	A A	4	a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 others(1): Show a0006c0008t0003g0015 a0006c0008t0003g0030 a0033c0038t0011g0029 a0034c0043t0010g0031	5	HG01175.hp2 HG01891.hp2 HG02055.hp2 others(2): Show HG01175.hp2 HG01891.hp2 HG02055.hp2 HG02897.hp2 NA20129.hp1	intron_variant	MODIFIER	c.247+51G>A c.247+51G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185177
chr9:42185235	G G	A A	1	a0027c0042t0006g0038 a0027c0042t0006g0038	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.247+109G>A c.247+109G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185235
chr9:42185279	A A	C C	29	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 others(26): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0033 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0007t0001g0001 a0001c0026t0001g0003 a0001c0027t0001g0007 a0004c0004t0001g0001 a0004c0004t0001g0034 a0004c0004t0001g0059 a0020c0025t0001g0003 a0021c0024t0001g0007 a0022c0021t0001g0057 a0023c0022t0001g0003 a0024c0023t0001g0010 a0025c0016t0001g0001 a0026c0020t0001g0001 a0028c0018t0009g0043 a0031c0017t0001g0003 a0032c0037t0001g0001 a0035c0039t0001g0007	76	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(73): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19004.hp1 NA19056.hp2 NA19057.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19074.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20905.hp2	intron_variant	MODIFIER	c.247+153A>C c.247+153A>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185279
chr9:42185488	G G	A A	1	a0027c0042t0006g0038 a0027c0042t0006g0038	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.248-207G>A c.248-207G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185488
chr9:42185494	G G	A A	1	a0029c0019t0006g0032 a0029c0019t0006g0032	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.248-201G>A c.248-201G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185494
chr9:42185507	T T	C C	2	a0033c0038t0011g0029 a0034c0043t0010g0031 a0033c0038t0011g0029 a0034c0043t0010g0031	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	intron_variant	MODIFIER	c.248-188T>C c.248-188T>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185507
chr9:42185508	G G	T T	2	a0033c0038t0011g0029 a0034c0043t0010g0031 a0033c0038t0011g0029 a0034c0043t0010g0031	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	intron_variant	MODIFIER	c.248-187G>T c.248-187G>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185508
chr9:42185522	A A	T T	1	a0007c0006t0002g0035 a0007c0006t0002g0035	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.248-173A>T c.248-173A>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185522
chr9:42185526	C C	T T	1	a0033c0038t0011g0029 a0033c0038t0011g0029	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.248-169C>T c.248-169C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185526
chr9:42185616	C C	T T	7	a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 others(4): Show a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014	9	HG03490.hp2 NA19000.hp2 NA19004.hp2 others(6): Show HG03490.hp2 NA19000.hp2 NA19004.hp2 NA19056.hp1 NA19057.hp2 NA19070.hp1 NA19074.hp2 NA19086.hp1 NA19090.hp1	intron_variant	MODIFIER	c.248-79C>T c.248-79C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185616
chr9:42185648	T T	A A	2	a0033c0038t0011g0029 a0034c0043t0010g0031 a0033c0038t0011g0029 a0034c0043t0010g0031	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	intron_variant	MODIFIER	c.248-47T>A c.248-47T>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185648
chr9:42185662	C C	T T	1	a0027c0042t0006g0038 a0027c0042t0006g0038	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.248-33C>T c.248-33C>T	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	2/3		chr9	42185662
chr9:42185802	A A	G G	42	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 others(39): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0022 a0001c0001t0001g0033 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0007t0001g0001 a0001c0026t0001g0003 a0001c0027t0001g0007 a0004c0004t0001g0001 a0004c0004t0001g0034 a0004c0004t0001g0059 a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014 a0020c0025t0001g0003 a0021c0024t0001g0007 a0022c0021t0001g0057 a0023c0022t0001g0003 a0024c0023t0001g0010 a0025c0016t0001g0001 a0026c0020t0001g0001 a0027c0042t0006g0038 a0028c0018t0009g0043 a0029c0019t0006g0032 a0031c0017t0001g0003 a0032c0037t0001g0001 a0033c0038t0011g0029 a0034c0043t0010g0031 a0035c0039t0001g0007	92	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(89): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03490.hp2 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19030.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19086.hp1 NA19087.hp1 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	intron_variant	MODIFIER	c.308+47A>G c.308+47A>G	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	3/3		chr9	42185802
chr9:42185809	A A	C C	42	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 others(39): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0022 a0001c0001t0001g0033 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0007t0001g0001 a0001c0026t0001g0003 a0001c0027t0001g0007 a0004c0004t0001g0001 a0004c0004t0001g0034 a0004c0004t0001g0059 a0005c0005t0004g0011 a0005c0005t0004g0025 a0005c0005t0004g0026 a0005c0005t0004g0028 a0016c0034t0004g0027 a0017c0036t0005g0014 a0018c0035t0005g0014 a0020c0025t0001g0003 a0021c0024t0001g0007 a0022c0021t0001g0057 a0023c0022t0001g0003 a0024c0023t0001g0010 a0025c0016t0001g0001 a0026c0020t0001g0001 a0027c0042t0006g0038 a0028c0018t0009g0043 a0029c0019t0006g0032 a0031c0017t0001g0003 a0032c0037t0001g0001 a0033c0038t0011g0029 a0034c0043t0010g0031 a0035c0039t0001g0007	92	HG00099.hp1 HG00280.hp1 HG00423.hp1 others(89): Show HG00099.hp1 HG00280.hp1 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp2 HG01952.hp1 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02273.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02717.hp2 HG02897.hp1 HG03239.hp1 HG03490.hp1 HG03490.hp2 HG03516.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG03942.hp1 HG04115.hp1 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18951.hp1 NA18954.hp2 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18980.hp1 NA18980.hp2 NA19000.hp1 NA19000.hp2 NA19004.hp1 NA19004.hp2 NA19030.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19074.hp2 NA19086.hp1 NA19087.hp1 NA19090.hp1 NA19090.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp2	intron_variant	MODIFIER	c.308+54A>C c.308+54A>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	3/3		chr9	42185809
chr9:42185903	T T	C C	2	a0006c0014t0002g0052 a0034c0043t0010g0031 a0006c0014t0002g0052 a0034c0043t0010g0031	2	HG01175.hp2 HG04228.hp2 HG01175.hp2 HG04228.hp2	intron_variant	MODIFIER	c.309-108T>C c.309-108T>C	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	3/3		chr9	42185903
chr9:42185923	A A	G G	2	a0033c0038t0011g0029 a0034c0043t0010g0031 a0033c0038t0011g0029 a0034c0043t0010g0031	2	HG01175.hp2 NA20129.hp1 HG01175.hp2 NA20129.hp1	intron_variant	MODIFIER	c.309-88A>G c.309-88A>G	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	3/3		chr9	42185923
chr9:42185991	G G	A A	1	a0029c0019t0006g0032 a0029c0019t0006g0032	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.309-20G>A c.309-20G>A	SPATA31A6	ENSG00000185775.10	transcript	ENST00000332857.7	protein_coding	3/3		chr9	42185991

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🧬 JoGo Online Haplotype Explorer SPATA31A6_chr9_42178659_42194887

JoGo Local Haplotype Explorer (on iGV) SPATA31A6_chr9_42178659_42194887

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 35)

CCoding Level Haplotype Info (Total: 43)

TTranscript Level Haplotype Info (Total: 12)

GGenebody Level Haplotype Info (Total: 67)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 43)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 47)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 92)

Haplotype Details by Sample (Haploid Level) (Total: 182)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 90)

CCoding Level Variants (Synonymous Mutations) (Total: 32)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 8)

GGenebody Level Haplotype Variants (Intron) (Total: 83)

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Annotation (Repeats)

Annotation (SNP Array)