Joint Open Genome and Omics Platform (JoGo)

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geneid	6839
ensemblid	ENSG00000101945.17
hgncid	11479
symbol	SUV39H1
name	SUV39H1 histone lysine methyltransferase
refseq_nuc	NM_003173.4
refseq_prot	NP_003164.1
ensembl_nuc	ENST00000376687.4
ensembl_prot	ENSP00000365877.4
mane_status	MANE Select
chr	chrX
start	48696734
end	48709016
strand	+
ver	v1.2
region	chrX:48696734-48709016
region5000	chrX:48691734-48714016
regionname0	SUV39H1_chrX_48696734_48709016
regionname5000	SUV39H1_chrX_48691734_48714016

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	412	250	71	48	90	11	28	65	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0002	0/0	412	1	1	0	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0003	0/0	61	1	0	0	1	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	1239	243	69	48	85	11	28	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
c0002	0/0	1239	3	0	0	3	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
c0003	0/0	1239	2	2	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
c0004	0/0	1239	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
c0005	0/0	1239	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
c0006	0/0	1239	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
c0007	0/0	1243	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/1	1498	131	21	24	60	7	18	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
t0002	1/0	1498	111	46	23	27	4	10	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
t0003	0/0	1498	5	5	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
t0004	0/0	1500	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
t0005	0/0	1497	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
t0006	0/0	1499	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
t0007	0/0	1498	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
t0008	0/0	1498	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	160	38	34	61	7	18	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0002	0/0	12	2	1	8	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0003	0/0	7	6	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0004	0/0	6	1	0	3	1	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0005	0/0	5	5	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0006	0/0	3	3	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0007	0/0	3	3	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0008	0/0	3	0	2	0	1	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0009	0/0	3	1	1	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0010	0/0	2	2	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0011	0/0	2	0	2	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0012	0/0	2	2	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0013	0/0	2	0	0	2	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0014	0/0	2	0	1	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0015	0/0	2	0	0	2	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0016	0/0	2	0	0	2	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0017	0/0	2	2	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0018	0/0	2	0	0	2	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0019	0/0	2	0	0	1	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0020	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0021	0/0	1	0	0	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0022	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0023	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0024	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0025	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0026	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0027	0/0	1	0	0	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0028	0/0	1	0	0	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0029	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0030	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0031	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0032	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0033	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0034	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0035	0/0	1	0	0	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0036	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0037	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0038	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0039	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0040	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0041	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0042	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0043	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0044	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0045	0/0	1	0	0	0	1	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0046	0/0	1	0	0	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0047	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0048	0/0	1	0	0	0	1	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
g0049	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	1239	243	69	48	85	11	28	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0002	0/0	1239	3	0	0	3	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0003	0/0	1239	2	2	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0005	0/0	1239	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0006	0/0	1239	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0002c0004	0/0	1239	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0003c0007	0/0	1243	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/1	2736	127	21	24	56	7	18	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0001t0002	1/0	2736	107	43	23	26	4	10	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0001t0003	0/0	2736	5	5	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0001t0005	0/0	2735	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0001t0006	0/0	2737	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0001t0007	0/0	2736	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0001t0008	0/0	2736	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0002t0001	0/0	2736	3	0	0	3	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0003t0002	0/0	2736	2	2	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0005t0001	0/0	2736	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0001c0006t0002	0/0	2736	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0002c0004t0002	0/0	2736	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016
a0003c0007t0004	0/0	2742	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	copy fasta	chrX	48691734	48714016

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/1	96	16	17	42	4	16	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0004	0/0	3	1	0	2	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0006	0/0	3	3	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0008	0/0	3	0	2	0	1	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0013	0/0	2	0	0	2	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0015	0/0	2	0	0	2	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0016	0/0	2	0	0	2	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0019	0/0	2	0	0	1	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0021	0/0	1	0	0	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0023	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0026	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0033	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0037	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0038	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0039	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0040	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0042	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0044	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0045	0/0	1	0	0	0	1	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0047	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0048	0/0	1	0	0	0	1	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0001g0049	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0001	1/0	56	21	16	13	3	2	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0002	0/0	12	2	1	8	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0003	0/0	7	6	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0004	0/0	3	0	0	1	1	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0007	0/0	3	3	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0009	0/0	3	1	1	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0010	0/0	2	2	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0011	0/0	2	0	2	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0012	0/0	2	2	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0014	0/0	2	0	1	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0017	0/0	2	2	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0018	0/0	2	0	0	2	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0022	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0027	0/0	1	0	0	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0028	0/0	1	0	0	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0029	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0030	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0032	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0034	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0035	0/0	1	0	0	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0036	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0041	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0002g0046	0/0	1	0	0	0	0	1	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0003g0005	0/0	5	5	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0005g0001	0/0	1	0	1	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0006g0025	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0007g0001	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0001t0008g0001	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0002t0001g0001	0/0	2	0	0	2	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0002t0001g0031	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0003t0002g0024	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0003t0002g0043	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0005t0001g0001	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0001c0006t0002g0001	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0002c0004t0002g0001	0/0	1	1	0	0	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
a0003c0007t0004g0020	0/0	1	0	0	1	0	0	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0048	EUR	GBR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00140	hp1	a0001	c0001	t0001	g0008	EUR	GBR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00280	hp1	a0001	c0001	t0002	g0001	EUR	FIN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00323	hp2	a0001	c0001	t0002	g0001	EUR	FIN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00408	hp1	a0001	c0001	t0002	g0001	EAS	CHS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00423	hp1	a0001	c0001	t0008	g0001	EAS	CHS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00423	hp2	a0001	c0001	t0007	g0001	EAS	CHS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00544	hp1	a0001	c0001	t0001	g0040	EAS	CHS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00544	hp2	a0001	c0001	t0002	g0002	EAS	CHS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00639	hp1	a0001	c0001	t0002	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00639	hp2	a0001	c0001	t0002	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00673	hp1	a0001	c0001	t0001	g0039	EAS	CHS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00735	hp1	a0001	c0001	t0002	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00735	hp2	a0001	c0001	t0002	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00738	hp1	a0001	c0001	t0002	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00741	hp1	a0001	c0001	t0005	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG00741	hp2	a0001	c0001	t0002	g0011	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01070	hp1	a0001	c0001	t0002	g0011	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01070	hp2	a0001	c0001	t0001	g0033	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01074	hp1	a0001	c0001	t0002	g0036	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01081	hp2	a0001	c0001	t0002	g0003	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01099	hp1	a0001	c0001	t0001	g0008	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01167	hp1	a0001	c0001	t0002	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01169	hp1	a0001	c0001	t0002	g0014	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01169	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01175	hp2	a0001	c0001	t0001	g0037	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01243	hp1	a0001	c0001	t0002	g0001	AMR	PUR	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01256	hp1	a0001	c0001	t0002	g0001	AMR	CLM	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01358	hp1	a0001	c0001	t0002	g0001	AMR	CLM	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01433	hp1	a0001	c0001	t0001	g0042	AMR	CLM	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01496	hp2	a0001	c0001	t0002	g0001	AMR	CLM	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01515	hp1	a0001	c0001	t0002	g0004	EUR	IBS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01517	hp1	a0001	c0001	t0002	g0001	EUR	IBS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01884	hp1	a0001	c0001	t0002	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01884	hp2	a0001	c0001	t0003	g0005	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01891	hp1	a0001	c0001	t0002	g0007	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01891	hp2	a0001	c0001	t0002	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01928	hp1	a0001	c0001	t0002	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01934	hp1	a0001	c0001	t0002	g0009	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01943	hp1	a0001	c0001	t0001	g0044	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01952	hp1	a0001	c0001	t0002	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01978	hp1	a0001	c0001	t0002	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01978	hp2	a0001	c0001	t0001	g0047	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01993	hp2	a0001	c0001	t0002	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02015	hp1	a0001	c0001	t0002	g0001	EAS	KHV	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02055	hp1	a0001	c0001	t0002	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02071	hp1	a0001	c0001	t0002	g0001	EAS	KHV	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02074	hp1	a0001	c0001	t0001	g0016	EAS	KHV	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02129	hp1	a0001	c0001	t0001	g0004	EAS	KHV	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02145	hp1	a0001	c0001	t0002	g0010	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02148	hp2	a0001	c0001	t0002	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02155	hp1	a0001	c0006	t0002	g0001	EAS	CDX	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02155	hp2	a0001	c0001	t0002	g0001	EAS	CDX	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02165	hp1	a0001	c0001	t0002	g0001	EAS	CDX	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02165	hp2	a0001	c0001	t0001	g0013	EAS	CDX	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02257	hp1	a0001	c0001	t0002	g0022	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02257	hp2	a0001	c0001	t0002	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02258	hp1	a0001	c0001	t0002	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02273	hp1	a0001	c0001	t0002	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02280	hp1	a0001	c0001	t0002	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02280	hp2	a0001	c0001	t0001	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02451	hp1	a0001	c0001	t0001	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02451	hp2	a0001	c0001	t0002	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02572	hp1	a0002	c0004	t0002	g0001	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02602	hp1	a0001	c0001	t0001	g0019	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02615	hp1	a0001	c0001	t0001	g0004	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02615	hp2	a0001	c0001	t0002	g0030	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02622	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02622	hp2	a0001	c0001	t0002	g0007	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02630	hp1	a0001	c0001	t0002	g0001	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02630	hp2	a0001	c0001	t0002	g0003	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02647	hp1	a0001	c0001	t0002	g0012	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02683	hp1	a0001	c0001	t0002	g0014	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02683	hp2	a0001	c0001	t0002	g0035	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02717	hp1	a0001	c0001	t0002	g0002	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02735	hp1	a0001	c0001	t0002	g0027	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02886	hp1	a0001	c0001	t0002	g0001	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02886	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02896	hp1	a0001	c0001	t0002	g0001	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02896	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02922	hp1	a0001	c0001	t0001	g0006	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02965	hp1	a0001	c0001	t0002	g0001	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02970	hp1	a0001	c0001	t0002	g0041	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02970	hp2	a0001	c0001	t0002	g0001	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02976	hp1	a0001	c0001	t0002	g0029	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02976	hp2	a0001	c0001	t0002	g0003	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03041	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03041	hp2	a0001	c0001	t0002	g0001	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03130	hp1	a0001	c0001	t0003	g0005	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03139	hp1	a0001	c0001	t0002	g0001	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03195	hp1	a0001	c0001	t0001	g0006	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03209	hp1	a0001	c0003	t0002	g0024	AFR	MSL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03225	hp1	a0001	c0001	t0001	g0026	AFR	MSL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03239	hp1	a0001	c0001	t0002	g0002	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03453	hp1	a0001	c0001	t0001	g0006	AFR	MSL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03453	hp2	a0001	c0001	t0002	g0003	AFR	MSL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03486	hp1	a0001	c0001	t0002	g0001	AFR	MSL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03486	hp2	a0001	c0001	t0002	g0002	AFR	MSL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03516	hp1	a0001	c0001	t0002	g0001	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03516	hp2	a0001	c0001	t0001	g0001	AFR	ESN	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03540	hp1	a0001	c0001	t0002	g0003	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03540	hp2	a0001	c0003	t0002	g0043	AFR	GWD	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03579	hp1	a0001	c0001	t0002	g0017	AFR	MSL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03669	hp1	a0001	c0001	t0002	g0028	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03688	hp1	a0001	c0001	t0002	g0004	SAS	STU	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03710	hp1	a0001	c0001	t0002	g0001	SAS	PJL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03831	hp1	a0001	c0001	t0001	g0021	SAS	BEB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03834	hp1	a0001	c0001	t0002	g0001	SAS	BEB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG04115	hp1	a0001	c0001	t0002	g0009	SAS	STU	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG04184	hp1	a0001	c0001	t0002	g0046	SAS	BEB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18522	hp1	a0001	c0001	t0002	g0010	AFR	YRI	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18747	hp1	a0001	c0001	t0002	g0002	EAS	CHB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18906	hp1	a0001	c0001	t0002	g0001	AFR	YRI	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18906	hp2	a0001	c0001	t0003	g0005	AFR	YRI	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18944	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18950	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18950	hp2	a0001	c0001	t0001	g0049	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18956	hp1	a0001	c0001	t0001	g0013	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18956	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18957	hp2	a0001	c0001	t0001	g0015	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18961	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18962	hp1	a0001	c0001	t0001	g0015	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18965	hp1	a0001	c0002	t0001	g0031	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18967	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18969	hp1	a0001	c0001	t0002	g0034	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18969	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18971	hp1	a0001	c0001	t0001	g0016	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18977	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18982	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18985	hp1	a0001	c0001	t0001	g0023	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18989	hp1	a0001	c0001	t0006	g0025	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18995	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19000	hp1	a0001	c0001	t0001	g0019	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19004	hp1	a0001	c0002	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19012	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19030	hp1	a0001	c0001	t0002	g0001	AFR	LWK	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19030	hp2	a0001	c0001	t0001	g0001	AFR	LWK	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19043	hp1	a0001	c0001	t0002	g0007	AFR	LWK	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19054	hp1	a0001	c0001	t0001	g0038	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19054	hp2	a0001	c0001	t0002	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19062	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19063	hp1	a0001	c0001	t0001	g0004	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19066	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19068	hp1	a0001	c0001	t0002	g0032	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19072	hp1	a0001	c0005	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19074	hp1	a0001	c0001	t0002	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19076	hp1	a0003	c0007	t0004	g0020	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19081	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19081	hp2	a0001	c0001	t0002	g0018	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19083	hp1	a0001	c0001	t0002	g0004	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19088	hp1	a0001	c0001	t0002	g0018	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA20129	hp1	a0001	c0001	t0001	g0001	AFR	ASW	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA20129	hp2	a0001	c0001	t0002	g0001	AFR	ASW	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA20805	hp1	a0001	c0001	t0001	g0045	EUR	TSI	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01123	hp1	a0001	c0001	t0001	g0008	AMR	CLM	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG01123	hp2	a0001	c0001	t0002	g0002	AMR	CLM	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02109	hp1	a0001	c0001	t0001	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02109	hp2	a0001	c0001	t0002	g0003	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02559	hp1	a0001	c0001	t0002	g0017	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG02559	hp2	a0001	c0001	t0003	g0005	AFR	ACB	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG03471	hp1	a0001	c0001	t0002	g0001	AFR	MSL	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG06807	hp1	a0001	c0001	t0002	g0003	AFR	USA	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
HG06807	hp2	a0001	c0001	t0002	g0012	AFR	USA	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA18955	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA20300	hp1	a0001	c0001	t0002	g0001	AFR	USA	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA20300	hp2	a0001	c0001	t0003	g0005	AFR	USA	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA21309	hp1	a0001	c0001	t0002	g0009	AFR	LWK	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016
homoSapiens_grch38	hp1	a0001	c0001	t0002	g0001	REF	REF	SUV39H1_chrX_48691734_48714016	SUV39H1	chrX	48691734	48714016

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:48698960	CA CA	C C	1	a0003 a0003	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.80delA c.80delA	p.Lys27fs p.Lys27fs	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	2/6	131/2736	80/1239	27/412	INFO_REALIGN_3_PRIME	chrX	48698960
chrX:48700221	G G	A A	1	a0002 a0002	1	HG02572.hp1 HG02572.hp1	missense_variant	MODERATE	c.296G>A c.296G>A	p.Arg99Gln p.Arg99Gln	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/6	347/2736	296/1239	99/412		chrX	48700221
chrX:48700241	A A	AC AC	1	a0003 a0003	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.322dupC c.322dupC	p.Arg108fs p.Arg108fs	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/6	374/2736	323/1239	108/412	INFO_REALIGN_3_PRIME	chrX	48700241
chrX:48706313	C C	CA CA	1	a0003 a0003	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.878dupA c.878dupA	p.Ala295fs p.Ala295fs	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	4/6	930/2736	879/1239	293/412	INFO_REALIGN_3_PRIME	chrX	48706313
chrX:48707476	A A	T T	1	a0003 a0003	1	NA19076.hp1 NA19076.hp1	missense_variant	MODERATE	c.1145A>T c.1145A>T	p.Asn382Ile p.Asn382Ile	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	1196/2736	1145/1239	382/412		chrX	48707476
chrX:48707494	T T	TC TC	1	a0003 a0003	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.1166dupC c.1166dupC	p.Gly390fs p.Gly390fs	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	1218/2736	1167/1239	389/412	INFO_REALIGN_3_PRIME	chrX	48707494
chrX:48707502	T T	TTC TTC	1	a0003 a0003	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.1171_1172insTC c.1171_1172insTC	p.Ser391fs p.Ser391fs	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	1223/2736	1172/1239	391/412		chrX	48707502

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:48700405	C C	T T	1	a0001c0006 a0001c0006	1	HG02155.hp1 HG02155.hp1	synonymous_variant	LOW	c.480C>T c.480C>T	p.Phe160Phe p.Phe160Phe	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/6	531/2736	480/1239	160/412	chrX	48700405
chrX:48700468	C C	T T	1	a0001c0005 a0001c0005	1	NA19072.hp1 NA19072.hp1	synonymous_variant	LOW	c.543C>T c.543C>T	p.Cys181Cys p.Cys181Cys	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/6	594/2736	543/1239	181/412	chrX	48700468
chrX:48700687	T T	C C	1	a0001c0003 a0001c0003	2	HG03209.hp1 HG03540.hp2 HG03209.hp1 HG03540.hp2	synonymous_variant	LOW	c.762T>C c.762T>C	p.Arg254Arg p.Arg254Arg	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/6	813/2736	762/1239	254/412	chrX	48700687
chrX:48700702	C C	T T	1	a0001c0002 a0001c0002	3	NA18965.hp1 NA18995.hp1 NA19004.hp1 NA18965.hp1 NA18995.hp1 NA19004.hp1	synonymous_variant	LOW	c.777C>T c.777C>T	p.Arg259Arg p.Arg259Arg	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/6	828/2736	777/1239	259/412	chrX	48700702

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:48707617	A A	G G	1	a0001c0001t0008 a0001c0001t0008	1	HG00423.hp1 HG00423.hp1	3_prime_UTR_variant	MODIFIER	c.47A>G c.47A>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	47		chrX	48707617
chrX:48707636	G G	GC GC	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.69dupC c.69dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	70	INFO_REALIGN_3_PRIME	chrX	48707636
chrX:48707682	G G	GC GC	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.117dupC c.117dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	118	INFO_REALIGN_3_PRIME	chrX	48707682
chrX:48707696	C C	CA CA	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.126_127insA c.126_127insA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	127		chrX	48707696
chrX:48707728	GT GT	G G	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.159delT c.159delT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	159		chrX	48707728
chrX:48707743	AG AG	A A	1	a0001c0001t0005 a0001c0001t0005	1	HG00741.hp1 HG00741.hp1	3_prime_UTR_variant	MODIFIER	c.175delG c.175delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	175	INFO_REALIGN_3_PRIME	chrX	48707743
chrX:48707755	TC TC	T T	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.188delC c.188delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	188	INFO_REALIGN_3_PRIME	chrX	48707755
chrX:48707770	C C	CA CA	1	a0001c0001t0006 a0001c0001t0006	1	NA18989.hp1 NA18989.hp1	3_prime_UTR_variant	MODIFIER	c.201dupA c.201dupA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	202	INFO_REALIGN_3_PRIME	chrX	48707770
chrX:48707792	A A	AC AC	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.227dupC c.227dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	228	INFO_REALIGN_3_PRIME	chrX	48707792
chrX:48707868	TC TC	T T	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.300delC c.300delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	300	INFO_REALIGN_3_PRIME	chrX	48707868
chrX:48707881	T T	TC TC	1	a0001c0001t0006 a0001c0001t0006	1	NA18989.hp1 NA18989.hp1	3_prime_UTR_variant	MODIFIER	c.314dupC c.314dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	315	INFO_REALIGN_3_PRIME	chrX	48707881
chrX:48707881	TC TC	T T	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.314delC c.314delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	314	INFO_REALIGN_3_PRIME	chrX	48707881
chrX:48707915	AC AC	A A	1	a0001c0001t0006 a0001c0001t0006	1	NA18989.hp1 NA18989.hp1	3_prime_UTR_variant	MODIFIER	c.347delC c.347delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	347	INFO_REALIGN_3_PRIME	chrX	48707915
chrX:48708084	G G	GGT GGT	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.514_515insGT c.514_515insGT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	515		chrX	48708084
chrX:48708085	T T	C C	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.515T>C c.515T>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	515		chrX	48708085
chrX:48708096	CG CG	C C	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.529delG c.529delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	529	INFO_REALIGN_3_PRIME	chrX	48708096
chrX:48708270	G G	A A	1	a0001c0001t0007 a0001c0001t0007	1	HG00423.hp2 HG00423.hp2	3_prime_UTR_variant	MODIFIER	c.700G>A c.700G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	700		chrX	48708270
chrX:48708337	TG TG	T T	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.770delG c.770delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	770	INFO_REALIGN_3_PRIME	chrX	48708337
chrX:48708390	AC AC	A A	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.822delC c.822delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	822	INFO_REALIGN_3_PRIME	chrX	48708390
chrX:48708422	TC TC	T T	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.854delC c.854delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	854	INFO_REALIGN_3_PRIME	chrX	48708422
chrX:48708463	T T	TGG TGG	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.894_895dupGG c.894_895dupGG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	896	INFO_REALIGN_3_PRIME	chrX	48708463
chrX:48708504	C C	CG CG	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.935dupG c.935dupG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	936	INFO_REALIGN_3_PRIME	chrX	48708504
chrX:48708646	G G	GC GC	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.1079dupC c.1079dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	1080	INFO_REALIGN_3_PRIME	chrX	48708646
chrX:48708750	G G	GA GA	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.1181dupA c.1181dupA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	1182	INFO_REALIGN_3_PRIME	chrX	48708750
chrX:48708761	T T	C C	1	a0001c0001t0003 a0001c0001t0003	5	HG01884.hp2 HG02559.hp2 HG03130.hp1 others(2): Show HG01884.hp2 HG02559.hp2 HG03130.hp1 NA18906.hp2 NA20300.hp2	3_prime_UTR_variant	MODIFIER	c.1191T>C c.1191T>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	1191		chrX	48708761
chrX:48708904	G G	A A	8	a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 others(5): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0002t0001 a0001c0005t0001 a0003c0007t0004	136	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(133): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00323.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00544.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00741.hp1 HG01069.hp1 HG01070.hp2 HG01081.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01496.hp1 HG01517.hp2 HG01943.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02074.hp1 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02148.hp1 HG02165.hp2 HG02273.hp2 HG02280.hp2 HG02451.hp1 HG02486.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp1 HG02698.hp1 HG02738.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03195.hp1 HG03195.hp2 HG03225.hp1 HG03239.hp2 HG03453.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03654.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp2 HG03942.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18940.hp1 NA18943.hp1 NA18945.hp1 NA18948.hp1 NA18950.hp2 NA18952.hp1 NA18953.hp1 NA18956.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19030.hp2 NA19054.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19067.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp2 NA19076.hp1 NA19079.hp1 NA19081.hp1 NA19082.hp1 NA19085.hp1 NA19086.hp1 NA19091.hp1 NA20129.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.1334G>A c.1334G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	1334		chrX	48708904
chrX:48708977	TG TG	T T	1	a0003c0007t0004 a0003c0007t0004	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.1409delG c.1409delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	6/6	1409	INFO_REALIGN_3_PRIME	chrX	48708977

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:48696830	G G	GC GC	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.19+30dupC c.19+30dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48696830
chrX:48696876	C C	CG CG	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	NA18950.hp2 NA18950.hp2	intron_variant	MODIFIER	c.19+77dupG c.19+77dupG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48696876
chrX:48696899	C C	G G	1	a0001c0001t0001g0048 a0001c0001t0001g0048	1	HG00099.hp1 HG00099.hp1	intron_variant	MODIFIER	c.19+96C>G c.19+96C>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5		chrX	48696899
chrX:48696986	A A	AG AG	1	a0001c0001t0001g0047 a0001c0001t0001g0047	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.19+188dupG c.19+188dupG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48696986
chrX:48696990	G G	GT GT	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.19+187_19+188insT c.19+187_19+188insT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5		chrX	48696990
chrX:48697039	A A	AG AG	1	a0001c0001t0001g0019 a0001c0001t0001g0019	2	HG02602.hp1 NA19000.hp1 HG02602.hp1 NA19000.hp1	intron_variant	MODIFIER	c.19+242dupG c.19+242dupG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48697039
chrX:48697133	C C	T T	1	a0001c0001t0002g0046 a0001c0001t0002g0046	1	HG04184.hp1 HG04184.hp1	intron_variant	MODIFIER	c.19+330C>T c.19+330C>T	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5		chrX	48697133
chrX:48697151	T T	C C	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG03831.hp1 HG03831.hp1	intron_variant	MODIFIER	c.19+348T>C c.19+348T>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5		chrX	48697151
chrX:48697209	T T	C C	1	a0001c0001t0002g0022 a0001c0001t0002g0022	1	HG02257.hp1 HG02257.hp1	intron_variant	MODIFIER	c.19+406T>C c.19+406T>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5		chrX	48697209
chrX:48697374	T T	TG TG	1	a0001c0001t0001g0045 a0001c0001t0001g0045	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.19+577dupG c.19+577dupG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48697374
chrX:48697439	AG AG	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.19+640delG c.19+640delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48697439
chrX:48697618	A A	AG AG	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.19+822dupG c.19+822dupG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48697618
chrX:48697764	GC GC	G G	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.19+964delC c.19+964delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48697764
chrX:48697799	TG TG	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.19+998delG c.19+998delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48697799
chrX:48697857	TA TA	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.20-1041delA c.20-1041delA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48697857
chrX:48698010	CAG CAG	C C	1	a0001c0003t0002g0024 a0001c0003t0002g0024	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.20-890_20-889delGA c.20-890_20-889delGA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48698010
chrX:48698059	AC AC	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.20-840delC c.20-840delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48698059
chrX:48698067	T T	G G	2	a0001c0001t0006g0025 a0003c0007t0004g0020 a0001c0001t0006g0025 a0003c0007t0004g0020	2	NA18989.hp1 NA19076.hp1 NA18989.hp1 NA19076.hp1	intron_variant	MODIFIER	c.20-835T>G c.20-835T>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5		chrX	48698067
chrX:48698134	C C	A A	1	a0001c0001t0001g0026 a0001c0001t0001g0026	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.20-768C>A c.20-768C>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5		chrX	48698134
chrX:48698297	A A	AT AT	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.20-603dupT c.20-603dupT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48698297
chrX:48698369	TA TA	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.20-529delA c.20-529delA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48698369
chrX:48698516	G G	A A	2	a0001c0001t0002g0027 a0001c0001t0002g0028 a0001c0001t0002g0027 a0001c0001t0002g0028	2	HG02735.hp1 HG03669.hp1 HG02735.hp1 HG03669.hp1	intron_variant	MODIFIER	c.20-386G>A c.20-386G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5		chrX	48698516
chrX:48698530	TG TG	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.20-366delG c.20-366delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	48698530
chrX:48698677	C C	T T	1	a0001c0001t0001g0044 a0001c0001t0001g0044	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.20-225C>T c.20-225C>T	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	1/5		chrX	48698677
chrX:48699187	C C	A A	3	a0001c0001t0002g0010 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0010 a0001c0001t0002g0029 a0001c0001t0002g0030	4	HG02145.hp1 HG02615.hp2 HG02976.hp1 others(1): Show HG02145.hp1 HG02615.hp2 HG02976.hp1 NA18522.hp1	intron_variant	MODIFIER	c.165+140C>A c.165+140C>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	2/5		chrX	48699187
chrX:48699206	G G	A A	1	a0001c0001t0002g0011 a0001c0001t0002g0011	2	HG00741.hp2 HG01070.hp1 HG00741.hp2 HG01070.hp1	intron_variant	MODIFIER	c.165+159G>A c.165+159G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	2/5		chrX	48699206
chrX:48699526	CT CT	C C	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.165+481delT c.165+481delT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	2/5	INFO_REALIGN_3_PRIME	chrX	48699526
chrX:48699766	A A	G G	4	a0001c0001t0002g0002 a0001c0001t0002g0018 a0001c0003t0002g0024 others(1): Show a0001c0001t0002g0002 a0001c0001t0002g0018 a0001c0003t0002g0024 a0001c0003t0002g0043	16	HG00544.hp2 HG01123.hp2 HG02717.hp1 others(13): Show HG00544.hp2 HG01123.hp2 HG02717.hp1 HG03209.hp1 HG03239.hp1 HG03486.hp2 HG03540.hp2 NA18747.hp1 NA18944.hp1 NA18950.hp1 NA18955.hp1 NA18956.hp2 NA18967.hp1 NA18977.hp1 NA19081.hp2 NA19088.hp1	intron_variant	MODIFIER	c.166-325A>G c.166-325A>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	2/5		chrX	48699766
chrX:48700909	G G	A A	1	a0001c0002t0001g0031 a0001c0002t0001g0031	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.828+156G>A c.828+156G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48700909
chrX:48701168	G G	GT GT	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.828+419dupT c.828+419dupT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48701168
chrX:48701481	G G	GC GC	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.828+730dupC c.828+730dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48701481
chrX:48701500	TG TG	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.828+752delG c.828+752delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48701500
chrX:48701512	G G	A A	1	a0001c0001t0002g0012 a0001c0001t0002g0012	2	HG02647.hp1 HG06807.hp2 HG02647.hp1 HG06807.hp2	intron_variant	MODIFIER	c.828+759G>A c.828+759G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48701512
chrX:48701640	GC GC	G G	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.828+890delC c.828+890delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48701640
chrX:48701643	CAGCTGCA others(9): Show CAGCTGCACAAGGCTAA	C C	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	HG01070.hp2 HG01070.hp2	intron_variant	MODIFIER	c.828+894_828+909del others(16): Show c.828+894_828+909delTGCACAAGGCTAAAGC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48701643
chrX:48701739	T T	C C	1	a0001c0001t0001g0006 a0001c0001t0001g0006	3	HG02922.hp1 HG03195.hp1 HG03453.hp1 HG02922.hp1 HG03195.hp1 HG03453.hp1	intron_variant	MODIFIER	c.828+986T>C c.828+986T>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48701739
chrX:48701888	C C	G G	2	a0001c0003t0002g0024 a0001c0003t0002g0043 a0001c0003t0002g0024 a0001c0003t0002g0043	2	HG03209.hp1 HG03540.hp2 HG03209.hp1 HG03540.hp2	intron_variant	MODIFIER	c.828+1135C>G c.828+1135C>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48701888
chrX:48701943	C C	G G	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	HG01433.hp1 HG01433.hp1	intron_variant	MODIFIER	c.828+1190C>G c.828+1190C>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48701943
chrX:48702008	G G	A A	1	a0001c0001t0002g0007 a0001c0001t0002g0007	3	HG01891.hp1 HG02622.hp2 NA19043.hp1 HG01891.hp1 HG02622.hp2 NA19043.hp1	intron_variant	MODIFIER	c.828+1255G>A c.828+1255G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48702008
chrX:48702128	CCTGCTGG others(1): Show CCTGCTGGA	C C	2	a0001c0003t0002g0024 a0001c0003t0002g0043 a0001c0003t0002g0024 a0001c0003t0002g0043	2	HG03209.hp1 HG03540.hp2 HG03209.hp1 HG03540.hp2	intron_variant	MODIFIER	c.828+1376_828+1383d others(10): Show c.828+1376_828+1383delCTGCTGGA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48702128
chrX:48702292	G G	A A	1	a0001c0001t0002g0034 a0001c0001t0002g0034	1	NA18969.hp1 NA18969.hp1	intron_variant	MODIFIER	c.828+1539G>A c.828+1539G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48702292
chrX:48702445	CG CG	C C	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.828+1697delG c.828+1697delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48702445
chrX:48702557	T T	TC TC	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.828+1806dupC c.828+1806dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48702557
chrX:48702607	AC AC	A A	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.828+1855delC c.828+1855delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48702607
chrX:48702617	G G	GCAT GCAT	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.828+1864_828+1865i others(5): Show c.828+1864_828+1865insCAT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48702617
chrX:48702619	A A	G G	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.828+1866A>G c.828+1866A>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48702619
chrX:48702620	G G	A A	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.828+1867G>A c.828+1867G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48702620
chrX:48702748	TC TC	T T	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.828+1998delC c.828+1998delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48702748
chrX:48702765	GC GC	G G	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.828+2015delC c.828+2015delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48702765
chrX:48702868	G G	A A	2	a0001c0003t0002g0024 a0001c0003t0002g0043 a0001c0003t0002g0024 a0001c0003t0002g0043	2	HG03209.hp1 HG03540.hp2 HG03209.hp1 HG03540.hp2	intron_variant	MODIFIER	c.828+2115G>A c.828+2115G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48702868
chrX:48702982	C C	CACT CACT	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.828+2233_828+2235d others(5): Show c.828+2233_828+2235dupACT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48702982
chrX:48703118	G G	GA GA	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.828+2367dupA c.828+2367dupA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703118
chrX:48703138	TA TA	T T	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.828+2387delA c.828+2387delA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703138
chrX:48703233	A A	AC AC	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.828+2483dupC c.828+2483dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703233
chrX:48703275	A A	G G	3	a0001c0001t0002g0007 a0001c0001t0002g0017 a0001c0001t0002g0041 a0001c0001t0002g0007 a0001c0001t0002g0017 a0001c0001t0002g0041	6	HG01891.hp1 HG02559.hp1 HG02622.hp2 others(3): Show HG01891.hp1 HG02559.hp1 HG02622.hp2 HG02970.hp1 HG03579.hp1 NA19043.hp1	intron_variant	MODIFIER	c.828+2522A>G c.828+2522A>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48703275
chrX:48703292	A A	G G	3	a0001c0001t0002g0007 a0001c0001t0002g0017 a0001c0001t0002g0041 a0001c0001t0002g0007 a0001c0001t0002g0017 a0001c0001t0002g0041	6	HG01891.hp1 HG02559.hp1 HG02622.hp2 others(3): Show HG01891.hp1 HG02559.hp1 HG02622.hp2 HG02970.hp1 HG03579.hp1 NA19043.hp1	intron_variant	MODIFIER	c.828+2539A>G c.828+2539A>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48703292
chrX:48703374	A A	AG AG	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.828+2624dupG c.828+2624dupG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703374
chrX:48703411	T T	TA TA	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.828+2658_828+2659i others(3): Show c.828+2658_828+2659insA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48703411
chrX:48703511	GT GT	G G	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2752delT c.829-2752delT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703511
chrX:48703526	TC TC	T T	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.829-2736delC c.829-2736delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703526
chrX:48703575	A A	C C	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2690A>C c.829-2690A>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48703575
chrX:48703576	C C	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2689C>A c.829-2689C>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48703576
chrX:48703577	A A	C C	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2688A>C c.829-2688A>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48703577
chrX:48703618	T T	G G	1	a0001c0001t0002g0029 a0001c0001t0002g0029	1	HG02976.hp1 HG02976.hp1	intron_variant	MODIFIER	c.829-2647T>G c.829-2647T>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48703618
chrX:48703619	CT CT	C C	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.829-2644delT c.829-2644delT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703619
chrX:48703658	G G	GT GT	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2602dupT c.829-2602dupT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703658
chrX:48703707	AT AT	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2555delT c.829-2555delT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703707
chrX:48703758	GA GA	G G	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2504delA c.829-2504delA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703758
chrX:48703926	A A	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2339A>T c.829-2339A>T	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48703926
chrX:48703932	GC GC	G G	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.829-2330delC c.829-2330delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703932
chrX:48703970	T T	TA TA	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2294dupA c.829-2294dupA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703970
chrX:48703973	C C	CT CT	4	a0001c0001t0002g0009 a0001c0001t0002g0028 a0001c0003t0002g0024 others(1): Show a0001c0001t0002g0009 a0001c0001t0002g0028 a0001c0003t0002g0024 a0001c0003t0002g0043	6	HG01934.hp1 HG03209.hp1 HG03540.hp2 others(3): Show HG01934.hp1 HG03209.hp1 HG03540.hp2 HG03669.hp1 HG04115.hp1 NA21309.hp1	intron_variant	MODIFIER	c.829-2275dupT c.829-2275dupT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703973
chrX:48703973	CT CT	C C	2	a0001c0001t0001g0033 a0001c0001t0002g0014 a0001c0001t0001g0033 a0001c0001t0002g0014	3	HG01070.hp2 HG01169.hp1 HG02683.hp1 HG01070.hp2 HG01169.hp1 HG02683.hp1	intron_variant	MODIFIER	c.829-2275delT c.829-2275delT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48703973
chrX:48703977	T T	C C	1	a0001c0001t0001g0013 a0001c0001t0001g0013	2	HG02165.hp2 NA18956.hp1 HG02165.hp2 NA18956.hp1	intron_variant	MODIFIER	c.829-2288T>C c.829-2288T>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48703977
chrX:48704114	AC AC	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2150delC c.829-2150delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48704114
chrX:48704165	GC GC	G G	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-2097delC c.829-2097delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48704165
chrX:48704253	C C	A A	1	a0001c0001t0002g0035 a0001c0001t0002g0035	1	HG02683.hp2 HG02683.hp2	intron_variant	MODIFIER	c.829-2012C>A c.829-2012C>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48704253
chrX:48704262	G G	GC GC	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.829-2001dupC c.829-2001dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48704262
chrX:48704286	T T	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1979T>A c.829-1979T>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48704286
chrX:48704287	GA GA	G G	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1977delA c.829-1977delA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48704287
chrX:48704288	A A	AG AG	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.829-1976dupG c.829-1976dupG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48704288
chrX:48704374	T T	TA TA	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1890dupA c.829-1890dupA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48704374
chrX:48704380	GA GA	G G	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1880delA c.829-1880delA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48704380
chrX:48704419	C C	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1846C>A c.829-1846C>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48704419
chrX:48704441	TC TC	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1821delC c.829-1821delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48704441
chrX:48704514	A A	G G	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1751A>G c.829-1751A>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48704514
chrX:48704515	G G	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1750G>A c.829-1750G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48704515
chrX:48704602	T T	C C	1	a0001c0001t0002g0036 a0001c0001t0002g0036	1	HG01074.hp1 HG01074.hp1	intron_variant	MODIFIER	c.829-1663T>C c.829-1663T>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48704602
chrX:48704772	AC AC	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1491delC c.829-1491delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48704772
chrX:48704828	C C	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1437C>A c.829-1437C>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48704828
chrX:48704838	AC AC	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1423delC c.829-1423delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48704838
chrX:48704908	TG TG	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1354delG c.829-1354delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48704908
chrX:48704922	GC GC	G G	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1341delC c.829-1341delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48704922
chrX:48705002	G G	A A	1	a0001c0001t0002g0018 a0001c0001t0002g0018	2	NA19081.hp2 NA19088.hp1 NA19081.hp2 NA19088.hp1	intron_variant	MODIFIER	c.829-1263G>A c.829-1263G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48705002
chrX:48705022	T T	TTCC TTCC	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1240_829-1238d others(5): Show c.829-1240_829-1238dupCTC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48705022
chrX:48705080	AG AG	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1182delG c.829-1182delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48705080
chrX:48705149	G G	GC GC	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1113dupC c.829-1113dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48705149
chrX:48705191	T T	TC TC	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-1073dupC c.829-1073dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48705191
chrX:48705253	G G	A A	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	HG01175.hp2 HG01175.hp2	intron_variant	MODIFIER	c.829-1012G>A c.829-1012G>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48705253
chrX:48705323	TC TC	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-940delC c.829-940delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48705323
chrX:48705343	T T	C C	3	a0001c0001t0003g0005 a0001c0003t0002g0024 a0001c0003t0002g0043 a0001c0001t0003g0005 a0001c0003t0002g0024 a0001c0003t0002g0043	7	HG01884.hp2 HG02559.hp2 HG03130.hp1 others(4): Show HG01884.hp2 HG02559.hp2 HG03130.hp1 HG03209.hp1 HG03540.hp2 NA18906.hp2 NA20300.hp2	intron_variant	MODIFIER	c.829-922T>C c.829-922T>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48705343
chrX:48705374	AG AG	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-888delG c.829-888delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48705374
chrX:48705598	C C	G G	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-667C>G c.829-667C>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48705598
chrX:48705711	GC GC	G G	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-552delC c.829-552delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48705711
chrX:48705805	TC TC	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-457delC c.829-457delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48705805
chrX:48705832	G G	C C	1	a0001c0001t0001g0008 a0001c0001t0001g0008	3	HG00140.hp1 HG01099.hp1 HG01123.hp1 HG00140.hp1 HG01099.hp1 HG01123.hp1	intron_variant	MODIFIER	c.829-433G>C c.829-433G>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48705832
chrX:48705832	G G	T T	1	a0001c0001t0002g0041 a0001c0001t0002g0041	1	HG02970.hp1 HG02970.hp1	intron_variant	MODIFIER	c.829-433G>T c.829-433G>T	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48705832
chrX:48705861	TC TC	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-401delC c.829-401delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48705861
chrX:48705882	C C	CT CT	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-380dupT c.829-380dupT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48705882
chrX:48706047	AG AG	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-215delG c.829-215delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48706047
chrX:48706053	T T	G G	1	a0001c0001t0001g0015 a0001c0001t0001g0015	2	NA18957.hp2 NA18962.hp1 NA18957.hp2 NA18962.hp1	intron_variant	MODIFIER	c.829-212T>G c.829-212T>G	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48706053
chrX:48706054	C C	A A	1	a0001c0001t0001g0015 a0001c0001t0001g0015	2	NA18957.hp2 NA18962.hp1 NA18957.hp2 NA18962.hp1	intron_variant	MODIFIER	c.829-211C>A c.829-211C>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48706054
chrX:48706069	AG AG	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.829-194delG c.829-194delG	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48706069
chrX:48706160	C C	A A	1	a0001c0001t0001g0006 a0001c0001t0001g0006	3	HG02922.hp1 HG03195.hp1 HG03453.hp1 HG02922.hp1 HG03195.hp1 HG03453.hp1	intron_variant	MODIFIER	c.829-105C>A c.829-105C>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5		chrX	48706160
chrX:48706164	C C	CA CA	1	a0001c0001t0001g0038 a0001c0001t0001g0038	1	NA19054.hp1 NA19054.hp1	intron_variant	MODIFIER	c.829-100dupA c.829-100dupA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	48706164
chrX:48706482	G G	GT GT	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.976-14dupT c.976-14dupT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	48706482
chrX:48706638	CA CA	C C	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1105+13delA c.1105+13delA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	48706638
chrX:48706641	G G	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1105+14G>T c.1105+14G>T	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5		chrX	48706641
chrX:48706797	AC AC	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1105+174delC c.1105+174delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	48706797
chrX:48706964	TC TC	T T	1	a0001c0001t0006g0025 a0001c0001t0006g0025	1	NA18989.hp1 NA18989.hp1	intron_variant	MODIFIER	c.1105+340delC c.1105+340delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	48706964
chrX:48707003	C C	T T	2	a0001c0001t0001g0016 a0001c0001t0001g0040 a0001c0001t0001g0016 a0001c0001t0001g0040	3	HG00544.hp1 HG02074.hp1 NA18971.hp1 HG00544.hp1 HG02074.hp1 NA18971.hp1	intron_variant	MODIFIER	c.1105+376C>T c.1105+376C>T	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5		chrX	48707003
chrX:48707016	G G	GC GC	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1105+390dupC c.1105+390dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	48707016
chrX:48707032	AC AC	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1106-402delC c.1106-402delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	48707032
chrX:48707109	G G	GC GC	10	a0001c0001t0001g0004 a0001c0001t0001g0023 a0001c0001t0001g0038 others(7): Show a0001c0001t0001g0004 a0001c0001t0001g0023 a0001c0001t0001g0038 a0001c0001t0001g0040 a0001c0001t0002g0004 a0001c0001t0002g0009 a0001c0001t0002g0030 a0001c0003t0002g0024 a0001c0003t0002g0043 a0003c0007t0004g0020	16	HG00544.hp1 HG01515.hp1 HG01934.hp1 others(13): Show HG00544.hp1 HG01515.hp1 HG01934.hp1 HG02129.hp1 HG02615.hp1 HG02615.hp2 HG03209.hp1 HG03540.hp2 HG03688.hp1 HG04115.hp1 NA18985.hp1 NA19054.hp1 NA19063.hp1 NA19076.hp1 NA19083.hp1 NA21309.hp1	intron_variant	MODIFIER	c.1106-319dupC c.1106-319dupC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	48707109
chrX:48707117	C C	A A	2	a0001c0001t0002g0003 a0001c0001t0002g0022 a0001c0001t0002g0003 a0001c0001t0002g0022	8	HG01081.hp2 HG02109.hp2 HG02257.hp1 others(5): Show HG01081.hp2 HG02109.hp2 HG02257.hp1 HG02630.hp2 HG02976.hp2 HG03453.hp2 HG03540.hp1 HG06807.hp1	intron_variant	MODIFIER	c.1106-320C>A c.1106-320C>A	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5		chrX	48707117
chrX:48707180	AC AC	A A	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1106-253delC c.1106-253delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	48707180
chrX:48707197	C C	T T	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.1106-240C>T c.1106-240C>T	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5		chrX	48707197
chrX:48707259	TC TC	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1106-175delC c.1106-175delC	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	48707259
chrX:48707375	C C	CT CT	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1106-61dupT c.1106-61dupT	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	48707375
chrX:48707387	C C	CA CA	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1106-50_1106-49ins others(1): Show c.1106-50_1106-49insA	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5		chrX	48707387
chrX:48707392	T T	C C	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1106-45T>C c.1106-45T>C	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5		chrX	48707392
chrX:48707393	C C	T T	1	a0003c0007t0004g0020 a0003c0007t0004g0020	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.1106-44C>T c.1106-44C>T	SUV39H1	ENSG00000101945.17	transcript	ENST00000376687.4	protein_coding	5/5		chrX	48707393

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🧬 JoGo Online Haplotype Explorer SUV39H1_chrX_48691734_48714016

JoGo Local Haplotype Explorer (on iGV) SUV39H1_chrX_48691734_48714016

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 3)

CCoding Level Haplotype Info (Total: 7)

TTranscript Level Haplotype Info (Total: 8)

GGenebody Level Haplotype Info (Total: 49)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 7)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 13)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 58)

Haplotype Details by Sample (Haploid Level) (Total: 252)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 7)

CCoding Level Variants (Synonymous Mutations) (Total: 4)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 27)

GGenebody Level Haplotype Variants (Intron) (Total: 132)

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Annotation (Repeats)

Annotation (SNP Array)