Joint Open Genome and Omics Platform (JoGo)

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geneid	169981
ensemblid	ENSG00000204271.13
hgncid	27272
symbol	SPIN3
name	spindlin family member 3
refseq_nuc	NM_001010862.3
refseq_prot	NP_001010862.2
ensembl_nuc	ENST00000374919.6
ensembl_prot	ENSP00000364054.3
mane_status	MANE Select
chr	chrX
start	56990831
end	56995541
strand	-
ver	v1.2
region	chrX:56990831-56995541
region5000	chrX:56985831-57000541
regionname0	SPIN3_chrX_56990831_56995541
regionname5000	SPIN3_chrX_56985831_57000541

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	258	317	74	56	150	11	24	119	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0002	0/0	111	1	0	0	1	0	0	1	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	777	314	72	56	150	11	23	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
c0002	0/0	777	2	2	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
c0003	0/0	779	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
c0004	0/0	777	1	0	0	0	0	1	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	3668	148	1	26	96	10	15	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0002	0/1	3669	92	22	20	41	1	7	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0003	0/0	3667	45	36	7	0	0	2	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0004	0/0	3668	5	5	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0005	0/0	3669	5	4	1	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0006	0/0	3669	5	0	1	4	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0007	0/0	3670	3	0	0	3	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0008	1/0	3669	2	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0009	0/0	3670	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0010	0/0	3669	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0011	0/0	3669	1	0	1	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0012	0/0	3669	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0013	0/0	3668	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0014	0/0	3669	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0015	0/0	3668	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0016	0/0	3667	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0017	0/0	3666	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0018	0/0	3667	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0019	0/0	3667	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0020	0/0	3683	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
t0021	0/0	3668	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	146	1	26	96	9	14	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0002	0/1	90	21	19	41	1	7	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0003	0/0	43	34	7	0	0	2	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0004	0/0	5	5	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0005	0/0	5	4	1	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0006	0/0	5	0	1	4	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0007	0/0	3	0	0	3	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0008	0/0	2	2	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0009	1/0	2	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0010	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0011	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0012	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0013	0/0	1	0	1	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0014	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0015	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0016	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0017	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0018	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0019	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0020	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0021	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0022	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0023	0/0	1	0	0	0	0	1	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0024	0/0	1	0	1	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0025	0/0	1	0	0	0	1	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
g0026	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	777	314	72	56	150	11	23	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0002	0/0	777	2	2	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0004	0/0	777	1	0	0	0	0	1	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0002c0003	0/0	779	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	4444	147	1	26	96	10	14	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0002	0/1	4445	92	22	20	41	1	7	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0003	0/0	4443	43	34	7	0	0	2	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0004	0/0	4444	5	5	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0005	0/0	4445	5	4	1	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0006	0/0	4445	5	0	1	4	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0007	0/0	4446	3	0	0	3	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0008	1/0	4445	2	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0010	0/0	4445	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0011	0/0	4445	1	0	1	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0012	0/0	4445	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0013	0/0	4444	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0014	0/0	4445	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0015	0/0	4444	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0016	0/0	4443	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0017	0/0	4442	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0018	0/0	4443	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0019	0/0	4443	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0020	0/0	4459	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0001t0021	0/0	4444	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0002t0003	0/0	4443	2	2	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0001c0004t0001	0/0	4444	1	0	0	0	0	1	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541
a0002c0003t0009	0/0	4448	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	copy fasta	chrX	56985831	57000541

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	146	1	26	96	9	14	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0001g0025	0/0	1	0	0	0	1	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0002g0002	0/1	90	21	19	41	1	7	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0002g0011	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0002g0024	0/0	1	0	1	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0003g0003	0/0	43	34	7	0	0	2	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0004g0004	0/0	5	5	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0005g0005	0/0	5	4	1	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0006g0006	0/0	5	0	1	4	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0007g0007	0/0	3	0	0	3	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0008g0009	1/0	2	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0010g0012	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0011g0013	0/0	1	0	1	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0012g0014	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0013g0015	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0014g0016	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0015g0017	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0016g0018	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0017g0019	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0018g0020	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0019g0021	0/0	1	1	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0020g0022	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0001t0021g0026	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0002t0003g0008	0/0	2	2	0	0	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0001c0004t0001g0023	0/0	1	0	0	0	0	1	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
a0002c0003t0009g0010	0/0	1	0	0	1	0	0	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00323	hp1	a0001	c0001	t0001	g0025	EUR	FIN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00423	hp2	a0001	c0001	t0002	g0002	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00544	hp2	a0001	c0001	t0002	g0002	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00558	hp2	a0001	c0001	t0002	g0002	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00609	hp1	a0001	c0001	t0002	g0002	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00642	hp1	a0001	c0001	t0003	g0003	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00733	hp1	a0001	c0001	t0003	g0003	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00733	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00735	hp2	a0001	c0001	t0002	g0002	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG00738	hp1	a0001	c0001	t0005	g0005	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01081	hp2	a0001	c0001	t0002	g0002	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01099	hp1	a0001	c0001	t0011	g0013	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01109	hp1	a0001	c0001	t0003	g0003	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01167	hp1	a0001	c0001	t0003	g0003	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01168	hp1	a0001	c0001	t0002	g0002	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01168	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01169	hp1	a0001	c0001	t0002	g0002	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01169	hp2	a0001	c0001	t0003	g0003	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01175	hp1	a0001	c0001	t0003	g0003	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01192	hp1	a0001	c0001	t0002	g0002	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01243	hp1	a0001	c0001	t0002	g0002	AMR	PUR	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01255	hp1	a0001	c0001	t0002	g0002	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01258	hp1	a0001	c0001	t0002	g0002	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01346	hp1	a0001	c0001	t0002	g0002	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01361	hp1	a0001	c0001	t0002	g0002	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01433	hp1	a0001	c0001	t0002	g0024	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01496	hp1	a0001	c0001	t0002	g0002	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01517	hp1	a0001	c0001	t0002	g0002	EUR	IBS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01884	hp1	a0001	c0001	t0003	g0003	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01884	hp2	a0001	c0001	t0002	g0002	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01891	hp1	a0001	c0001	t0003	g0003	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01891	hp2	a0001	c0001	t0002	g0002	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01928	hp1	a0001	c0001	t0002	g0002	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01943	hp1	a0001	c0001	t0002	g0002	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01952	hp1	a0001	c0001	t0006	g0006	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01975	hp1	a0001	c0001	t0002	g0002	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01975	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01978	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01981	hp1	a0001	c0001	t0002	g0002	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01993	hp2	a0001	c0001	t0002	g0002	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02004	hp2	a0001	c0001	t0002	g0002	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02027	hp1	a0001	c0001	t0002	g0002	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02040	hp1	a0001	c0001	t0012	g0014	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02055	hp1	a0001	c0001	t0003	g0003	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02071	hp1	a0001	c0001	t0002	g0002	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02080	hp2	a0001	c0001	t0002	g0002	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02132	hp1	a0001	c0001	t0007	g0007	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02145	hp1	a0001	c0001	t0003	g0003	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02148	hp1	a0001	c0001	t0002	g0002	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02155	hp1	a0001	c0001	t0002	g0002	EAS	CDX	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02257	hp1	a0001	c0001	t0004	g0004	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02257	hp2	a0001	c0001	t0003	g0003	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02258	hp1	a0001	c0001	t0005	g0005	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02273	hp1	a0001	c0001	t0002	g0002	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02273	hp2	a0001	c0001	t0001	g0001	AMR	PEL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02280	hp1	a0001	c0001	t0017	g0019	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02280	hp2	a0001	c0001	t0003	g0003	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02451	hp1	a0001	c0001	t0008	g0009	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02451	hp2	a0001	c0001	t0003	g0003	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02523	hp1	a0001	c0001	t0002	g0002	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02523	hp2	a0001	c0001	t0001	g0001	EAS	KHV	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02572	hp1	a0001	c0001	t0004	g0004	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02615	hp1	a0001	c0001	t0002	g0002	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02615	hp2	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02622	hp1	a0001	c0001	t0002	g0011	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02622	hp2	a0001	c0001	t0002	g0002	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02630	hp1	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02630	hp2	a0001	c0001	t0002	g0002	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02647	hp1	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02683	hp1	a0001	c0001	t0002	g0002	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02683	hp2	a0001	c0001	t0002	g0002	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02717	hp1	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02723	hp1	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02723	hp2	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02809	hp1	a0001	c0001	t0002	g0002	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02809	hp2	a0001	c0001	t0010	g0012	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02886	hp1	a0001	c0001	t0004	g0004	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02886	hp2	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02895	hp1	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02896	hp1	a0001	c0001	t0002	g0002	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02896	hp2	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02897	hp1	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02897	hp2	a0001	c0001	t0002	g0002	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02922	hp1	a0001	c0001	t0003	g0003	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02922	hp2	a0001	c0001	t0003	g0003	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02965	hp1	a0001	c0001	t0002	g0002	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02970	hp1	a0001	c0001	t0002	g0002	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02970	hp2	a0001	c0002	t0003	g0008	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02976	hp1	a0001	c0001	t0003	g0003	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02976	hp2	a0001	c0001	t0003	g0003	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03017	hp1	a0001	c0004	t0001	g0023	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03041	hp1	a0001	c0001	t0018	g0020	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03041	hp2	a0001	c0001	t0002	g0002	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03098	hp1	a0001	c0001	t0003	g0003	AFR	MSL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03130	hp1	a0001	c0001	t0005	g0005	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03139	hp1	a0001	c0001	t0002	g0002	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03209	hp1	a0001	c0001	t0003	g0003	AFR	MSL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03225	hp1	a0001	c0001	t0003	g0003	AFR	MSL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03453	hp1	a0001	c0001	t0002	g0002	AFR	MSL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03453	hp2	a0001	c0002	t0003	g0008	AFR	MSL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03486	hp1	a0001	c0001	t0003	g0003	AFR	MSL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03486	hp2	a0001	c0001	t0019	g0021	AFR	MSL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03516	hp1	a0001	c0001	t0002	g0002	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03516	hp2	a0001	c0001	t0003	g0003	AFR	ESN	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03540	hp1	a0001	c0001	t0003	g0003	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03540	hp2	a0001	c0001	t0002	g0002	AFR	GWD	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03579	hp1	a0001	c0001	t0003	g0003	AFR	MSL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03669	hp2	a0001	c0001	t0002	g0002	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03834	hp1	a0001	c0001	t0002	g0002	SAS	BEB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03834	hp2	a0001	c0001	t0003	g0003	SAS	BEB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG04184	hp2	a0001	c0001	t0002	g0002	SAS	BEB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG04204	hp1	a0001	c0001	t0002	g0002	SAS	STU	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG04228	hp1	a0001	c0001	t0002	g0002	SAS	STU	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18522	hp1	a0001	c0001	t0002	g0002	AFR	YRI	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18612	hp1	a0001	c0001	t0002	g0002	EAS	CHB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18939	hp1	a0001	c0001	t0013	g0015	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18941	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18943	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18947	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18948	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18949	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18949	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18950	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18951	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18952	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18954	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18954	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18957	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18959	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18963	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18963	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18966	hp1	a0001	c0001	t0015	g0017	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18968	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18969	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18973	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18973	hp2	a0001	c0001	t0006	g0006	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18974	hp1	a0002	c0003	t0009	g0010	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18975	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18975	hp2	a0001	c0001	t0006	g0006	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18978	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18978	hp2	a0001	c0001	t0006	g0006	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18979	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18981	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18981	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18982	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18987	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18987	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18988	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18994	hp1	a0001	c0001	t0007	g0007	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18998	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18998	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18999	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19001	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19001	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19002	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19005	hp1	a0001	c0001	t0007	g0007	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19006	hp1	a0001	c0001	t0006	g0006	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19011	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19012	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19043	hp1	a0001	c0001	t0001	g0001	AFR	LWK	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19054	hp1	a0001	c0001	t0021	g0026	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19054	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19059	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19059	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19063	hp1	a0001	c0001	t0020	g0022	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19064	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19065	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19072	hp1	a0001	c0001	t0016	g0018	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19074	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19076	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19080	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19080	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19084	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19084	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19086	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19087	hp2	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19090	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19240	hp1	a0001	c0001	t0002	g0002	AFR	YRI	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA19240	hp2	a0001	c0001	t0003	g0003	AFR	YRI	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA20129	hp1	a0001	c0001	t0003	g0003	AFR	ASW	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA20129	hp2	a0001	c0001	t0002	g0002	AFR	ASW	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA20905	hp1	a0001	c0001	t0003	g0003	SAS	GIH	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01123	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG01123	hp2	a0001	c0001	t0003	g0003	AMR	CLM	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02109	hp1	a0001	c0001	t0004	g0004	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02109	hp2	a0001	c0001	t0005	g0005	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02486	hp1	a0001	c0001	t0003	g0003	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02559	hp1	a0001	c0001	t0003	g0003	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG02559	hp2	a0001	c0001	t0005	g0005	AFR	ACB	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG03471	hp1	a0001	c0001	t0003	g0003	AFR	MSL	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG06807	hp1	a0001	c0001	t0004	g0004	AFR	USA	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
HG06807	hp2	a0001	c0001	t0014	g0016	AFR	USA	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA20300	hp1	a0001	c0001	t0002	g0002	AFR	USA	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA20300	hp2	a0001	c0001	t0003	g0003	AFR	USA	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA21309	hp1	a0001	c0001	t0002	g0002	AFR	LWK	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
NA21309	hp2	a0001	c0001	t0002	g0002	AFR	LWK	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
homoSapiens_chm13v2	hp1	a0001	c0001	t0002	g0002	REF	REF	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541
homoSapiens_grch38	hp1	a0001	c0001	t0008	g0009	REF	REF	SPIN3_chrX_56985831_57000541	SPIN3	chrX	56985831	57000541

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:56994307	A A	AC AC	1	a0002 a0002	1	NA18974.hp1 NA18974.hp1	frameshift_variant	HIGH	c.640dupG c.640dupG	p.Val214fs p.Val214fs	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	968/4445	640/777	214/258			chrX	56994307
chrX:56994618	A A	AG AG	1	a0002 a0002	1	NA18974.hp1 NA18974.hp1	frameshift_variant	HIGH	c.329_330insC c.329_330insC	p.Pro111fs p.Pro111fs	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	657/4445	329/777	110/258			chrX	56994618

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:56994192	G G	A A	1	a0001c0004 a0001c0004	1	HG03017.hp1 HG03017.hp1	synonymous_variant	LOW	c.756C>T c.756C>T	p.Tyr252Tyr p.Tyr252Tyr	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	1084/4445	756/777	252/258			chrX	56994192
chrX:56994345	C C	T T	1	a0001c0002 a0001c0002	2	HG02970.hp2 HG03453.hp2 HG02970.hp2 HG03453.hp2	synonymous_variant	LOW	c.603G>A c.603G>A	p.Glu201Glu p.Glu201Glu	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	931/4445	603/777	201/258			chrX	56994345

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:56990868	G G	GA GA	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.3302dupT c.3302dupT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	3302	chrX	56990868
chrX:56990916	T T	TA TA	1	a0001c0001t0007 a0001c0001t0007	3	HG02132.hp1 NA18994.hp1 NA19005.hp1 HG02132.hp1 NA18994.hp1 NA19005.hp1	3_prime_UTR_variant	MODIFIER	c.3254dupT c.3254dupT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	3254	chrX	56990916
chrX:56990916	T T	TAA TAA	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.3253_3254dupTT c.3253_3254dupTT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	3254	chrX	56990916
chrX:56990916	TA TA	T T	7	a0001c0001t0001 a0001c0001t0004 a0001c0001t0013 others(4): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0021 a0001c0004t0001	157	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(154): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00558.hp1 HG00621.hp1 HG00673.hp1 HG00733.hp2 HG00735.hp1 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01106.hp1 HG01123.hp1 HG01168.hp2 HG01175.hp2 HG01256.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01496.hp2 HG01515.hp1 HG01517.hp2 HG01934.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG02004.hp1 HG02015.hp1 HG02056.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02135.hp1 HG02148.hp2 HG02155.hp2 HG02257.hp1 HG02273.hp2 HG02523.hp2 HG02572.hp1 HG02602.hp1 HG02698.hp1 HG02735.hp1 HG02738.hp1 HG02886.hp1 HG03017.hp1 HG03490.hp1 HG03492.hp1 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG06807.hp1 NA18747.hp1 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp1 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18987.hp1 NA18989.hp1 NA18990.hp1 NA18995.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp2 NA19004.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19059.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp2 NA19075.hp1 NA19079.hp1 NA19080.hp1 NA19082.hp1 NA19083.hp1 NA19084.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA20752.hp1 NA20805.hp1	3_prime_UTR_variant	MODIFIER	c.3254delT c.3254delT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	3254	chrX	56990916
chrX:56990916	TAA TAA	T T	4	a0001c0001t0003 a0001c0001t0018 a0001c0001t0019 others(1): Show a0001c0001t0003 a0001c0001t0018 a0001c0001t0019 a0001c0002t0003	47	HG00642.hp1 HG00733.hp1 HG01109.hp1 others(44): Show HG00642.hp1 HG00733.hp1 HG01109.hp1 HG01123.hp2 HG01167.hp1 HG01169.hp2 HG01175.hp1 HG01884.hp1 HG01891.hp1 HG02055.hp1 HG02145.hp1 HG02257.hp2 HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02615.hp2 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03834.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp2 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.3253_3254delTT c.3253_3254delTT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	3253	chrX	56990916
chrX:56990916	TAAA TAAA	T T	1	a0001c0001t0017 a0001c0001t0017	1	HG02280.hp1 HG02280.hp1	3_prime_UTR_variant	MODIFIER	c.3252_3254delTTT c.3252_3254delTTT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	3252	chrX	56990916
chrX:56991066	A A	AG AG	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.3104dupC c.3104dupC	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	3104	chrX	56991066
chrX:56991098	C C	CT CT	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.3072dupA c.3072dupA	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	3072	chrX	56991098
chrX:56991126	G G	GC GC	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.3044dupG c.3044dupG	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	3044	chrX	56991126
chrX:56991161	T T	TA TA	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.3009dupT c.3009dupT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	3009	chrX	56991161
chrX:56991195	CT CT	C C	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2975delA c.2975delA	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2975	chrX	56991195
chrX:56991214	G G	A A	1	a0001c0001t0010 a0001c0001t0010	1	HG02809.hp2 HG02809.hp2	3_prime_UTR_variant	MODIFIER	c.2957C>T c.2957C>T	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2957	chrX	56991214
chrX:56991239	G G	C C	1	a0001c0001t0014 a0001c0001t0014	1	HG06807.hp2 HG06807.hp2	3_prime_UTR_variant	MODIFIER	c.2932C>G c.2932C>G	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2932	chrX	56991239
chrX:56991274	C C	CT CT	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2896dupA c.2896dupA	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2896	chrX	56991274
chrX:56991357	C C	CT CT	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2813dupA c.2813dupA	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2813	chrX	56991357
chrX:56991367	T T	A A	2	a0001c0001t0015 a0001c0001t0020 a0001c0001t0015 a0001c0001t0020	2	NA18966.hp1 NA19063.hp1 NA18966.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2804A>T c.2804A>T	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2804	chrX	56991367
chrX:56991429	A A	AT AT	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2741dupA c.2741dupA	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2741	chrX	56991429
chrX:56991511	C C	CA CA	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2659dupT c.2659dupT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2659	chrX	56991511
chrX:56991580	G G	GA GA	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2590dupT c.2590dupT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2590	chrX	56991580
chrX:56991668	T T	TC TC	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2502dupG c.2502dupG	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2502	chrX	56991668
chrX:56991682	G G	GA GA	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2488dupT c.2488dupT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2488	chrX	56991682
chrX:56991688	C C	CA CA	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2482dupT c.2482dupT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2482	chrX	56991688
chrX:56991770	C C	CA CA	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2400dupT c.2400dupT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2400	chrX	56991770
chrX:56991783	T T	TA TA	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2387dupT c.2387dupT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2387	chrX	56991783
chrX:56991802	G G	GC GC	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2368dupG c.2368dupG	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2368	chrX	56991802
chrX:56992010	T T	TA TA	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.2160dupT c.2160dupT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	2160	chrX	56992010
chrX:56992202	G G	GT GT	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.1968dupA c.1968dupA	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	1968	chrX	56992202
chrX:56992319	C C	G G	1	a0001c0001t0012 a0001c0001t0012	1	HG02040.hp1 HG02040.hp1	3_prime_UTR_variant	MODIFIER	c.1852G>C c.1852G>C	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	1852	chrX	56992319
chrX:56992371	T T	A A	1	a0001c0001t0010 a0001c0001t0010	1	HG02809.hp2 HG02809.hp2	3_prime_UTR_variant	MODIFIER	c.1800A>T c.1800A>T	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	1800	chrX	56992371
chrX:56992827	C C	T T	1	a0001c0001t0011 a0001c0001t0011	1	HG01099.hp1 HG01099.hp1	3_prime_UTR_variant	MODIFIER	c.1344G>A c.1344G>A	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	1344	chrX	56992827
chrX:56993027	G G	A A	1	a0001c0001t0018 a0001c0001t0018	1	HG03041.hp1 HG03041.hp1	3_prime_UTR_variant	MODIFIER	c.1144C>T c.1144C>T	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	1144	chrX	56993027
chrX:56993269	AC AC	A A	1	a0002c0003t0009 a0002c0003t0009	1	NA18974.hp1 NA18974.hp1	3_prime_UTR_variant	MODIFIER	c.901delG c.901delG	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	901	chrX	56993269
chrX:56993335	T T	C C	1	a0001c0001t0019 a0001c0001t0019	1	HG03486.hp2 HG03486.hp2	3_prime_UTR_variant	MODIFIER	c.836A>G c.836A>G	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	836	chrX	56993335
chrX:56993348	AC AC	A A	1	a0001c0001t0016 a0001c0001t0016	1	NA19072.hp1 NA19072.hp1	3_prime_UTR_variant	MODIFIER	c.822delG c.822delG	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	822	chrX	56993348
chrX:56993429	G G	A A	7	a0001c0001t0002 a0001c0001t0007 a0001c0001t0011 others(4): Show a0001c0001t0002 a0001c0001t0007 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0002c0003t0009	100	HG00423.hp2 HG00544.hp2 HG00558.hp2 others(97): Show HG00423.hp2 HG00544.hp2 HG00558.hp2 HG00609.hp1 HG00735.hp2 HG01081.hp2 HG01099.hp1 HG01168.hp1 HG01169.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01258.hp1 HG01346.hp1 HG01361.hp1 HG01433.hp1 HG01496.hp1 HG01517.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01975.hp1 HG01981.hp1 HG01993.hp2 HG02004.hp2 HG02027.hp1 HG02040.hp1 HG02071.hp1 HG02080.hp2 HG02132.hp1 HG02148.hp1 HG02155.hp1 HG02273.hp1 HG02523.hp1 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02809.hp1 HG02896.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG03041.hp2 HG03139.hp1 HG03453.hp1 HG03516.hp1 HG03540.hp2 HG03669.hp2 HG03834.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18939.hp1 NA18941.hp2 NA18943.hp1 NA18947.hp2 NA18948.hp1 NA18950.hp2 NA18951.hp2 NA18952.hp1 NA18954.hp2 NA18963.hp1 NA18969.hp1 NA18973.hp1 NA18974.hp1 NA18975.hp1 NA18978.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18987.hp2 NA18988.hp1 NA18994.hp1 NA18999.hp2 NA19002.hp1 NA19005.hp1 NA19012.hp1 NA19059.hp2 NA19064.hp2 NA19065.hp1 NA19074.hp1 NA19076.hp1 NA19080.hp2 NA19084.hp1 NA19086.hp1 NA19087.hp2 NA19090.hp1 NA19240.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.742C>T c.742C>T	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	742	chrX	56993429
chrX:56993458	T T	G G	7	a0001c0001t0001 a0001c0001t0006 a0001c0001t0015 others(4): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0015 a0001c0001t0016 a0001c0001t0020 a0001c0001t0021 a0001c0004t0001	157	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(154): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00558.hp1 HG00621.hp1 HG00673.hp1 HG00733.hp2 HG00735.hp1 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01106.hp1 HG01123.hp1 HG01168.hp2 HG01175.hp2 HG01256.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01496.hp2 HG01515.hp1 HG01517.hp2 HG01934.hp1 HG01952.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG02004.hp1 HG02015.hp1 HG02056.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 HG02148.hp2 HG02155.hp2 HG02273.hp2 HG02523.hp2 HG02602.hp1 HG02698.hp1 HG02735.hp1 HG02738.hp1 HG03017.hp1 HG03490.hp1 HG03492.hp1 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 NA18747.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp1 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18973.hp2 NA18975.hp2 NA18977.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18987.hp1 NA18989.hp1 NA18990.hp1 NA18995.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp2 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19059.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp2 NA19075.hp1 NA19079.hp1 NA19080.hp1 NA19082.hp1 NA19083.hp1 NA19084.hp2 NA19085.hp1 NA19087.hp1 NA19088.hp1 NA19089.hp1 NA19090.hp2 NA19091.hp1 NA20752.hp1 NA20805.hp1	3_prime_UTR_variant	MODIFIER	c.713A>C c.713A>C	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	713	chrX	56993458
chrX:56993682	C C	T T	17	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0020 a0001c0001t0021 a0001c0004t0001 a0002c0003t0009	268	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(265): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01106.hp1 HG01123.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02148.hp1 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02896.hp1 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG03017.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03453.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03540.hp2 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03710.hp1 HG03834.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18987.hp1 NA18987.hp2 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19001.hp1 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp1 NA19054.hp1 NA19054.hp2 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19059.hp1 NA19059.hp2 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.489G>A c.489G>A	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	489	chrX	56993682
chrX:56993841	T T	TC TC	1	a0002c0003t0009 a0002c0003t0009	1	NA18974.hp1 NA18974.hp1	3_prime_UTR_variant	MODIFIER	c.329dupG c.329dupG	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	329	chrX	56993841
chrX:56993853	AAAGAG AAAGAG	A A	1	a0001c0001t0020 a0001c0001t0020	1	NA19063.hp1 NA19063.hp1	3_prime_UTR_variant	MODIFIER	c.313_317delCTCTT c.313_317delCTCTT	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	2/2	313	chrX	56993853
chrX:56995399	C C	CG CG	1	a0002c0003t0009 a0002c0003t0009	1	NA18974.hp1 NA18974.hp1	5_prime_UTR_variant	MODIFIER	c.-187dupC c.-187dupC	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	1/2	453	chrX	56995399
chrX:56995506	T T	G G	1	a0001c0001t0021 a0001c0001t0021	1	NA19054.hp1 NA19054.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-293A>C c.-293A>C	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	1/2		chrX	56995506

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:56995101	C C	T T	1	a0001c0001t0002g0011 a0001c0001t0002g0011	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.-3+115G>A c.-3+115G>A	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	1/1	chrX	56995101
chrX:56995183	T T	TC TC	1	a0001c0001t0002g0024 a0001c0001t0002g0024	1	HG01433.hp1 HG01433.hp1	intron_variant	MODIFIER	c.-3+32dupG c.-3+32dupG	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	1/1	chrX	56995183
chrX:56995189	T T	A A	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	HG00323.hp1 HG00323.hp1	intron_variant	MODIFIER	c.-3+27A>T c.-3+27A>T	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	1/1	chrX	56995189
chrX:56995214	A A	AC AC	1	a0002c0003t0009g0010 a0002c0003t0009g0010	1	NA18974.hp1 NA18974.hp1	splice_donor_variant&intron_variant	HIGH	c.-3+1dupG c.-3+1dupG	SPIN3	ENSG00000204271.13	transcript	ENST00000374919.6	protein_coding	1/1	chrX	56995214

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🧬 JoGo Online Haplotype Explorer SPIN3_chrX_56985831_57000541

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 2)

CCoding Level Haplotype Info (Total: 4)

TTranscript Level Haplotype Info (Total: 21)

GGenebody Level Haplotype Info (Total: 26)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 4)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 23)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 26)

Haplotype Details by Sample (Haploid Level) (Total: 318)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

CCoding Level Variants (Synonymous Mutations) (Total: 2)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 41)

GGenebody Level Haplotype Variants (Intron) (Total: 4)

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Annotation (Repeats)

Annotation (SNP Array)